MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-26-g93e3d1d990bd) initialized Starting run at 05:23:19 UTC on 2023-06-26. Successfully read inputs file ... Castro git describe: 23.06-36-g90afb40ca AMReX git describe: 23.06-26-g93e3d1d99 Microphysics git describe: 23.06-33-g716dc7f9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016057994 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364692731 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338911271 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340554748 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330625122 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.3636798 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345370559 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313693142 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315274359 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.321732809 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317967803 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010232038 seconds Ending run at 05:23:23 UTC on 2023-06-26. Run time = 3.59832426 Run time without initialization = 3.369491331 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.597 ... 3.598 ... 3.598 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3301 2.3757 2.3991 66.67% Gravity::make_radial_gravity() 21 0.3206 0.3262 0.3404 9.46% Castro::estTimeStep() 21 0.02183 0.105 0.1632 4.54% Castro::initData() 1 0.03839 0.08764 0.154 4.28% check_for_negative_density() 10 0.04728 0.07105 0.1207 3.35% FabArray::ParallelCopy_finish() 41 0.03841 0.05608 0.09092 2.53% amrex::Copy() 193 0.06448 0.07792 0.08411 2.34% FabArray::setVal() 143 0.0602 0.06963 0.08348 2.32% Castro::reset_internal_energy(Fab) 1008 0.0481 0.05037 0.05482 1.52% Castro::normalize_species() 62 0.04098 0.04218 0.04456 1.24% FabArray::ParallelCopy_nowait() 41 0.03527 0.04145 0.04371 1.21% StateData::FillBoundary(geom) 41 0.03491 0.03732 0.03944 1.10% FillPatchIterator::Initialize 41 0.02937 0.0333 0.03577 0.99% Castro::construct_new_gravity_source() 10 0.02276 0.0255 0.03039 0.84% Gravity::interpolate_monopole_grav() 21 0.0285 0.0288 0.02941 0.82% Castro::initialize_do_advance() 10 0.01269 0.01781 0.02197 0.61% Castro::computeTemp() 63 0.01712 0.01945 0.02134 0.59% VisMF::Write(FabArray) 2 0.0136 0.01439 0.01695 0.47% Castro::initialize_advance() 10 0.004112 0.01041 0.01418 0.39% FabArray::Saxpy() 20 0.01062 0.0128 0.01367 0.38% FabArray::setDomainBndry() 41 0.008838 0.01129 0.01261 0.35% MultiFab::contains_nan() 20 0.01073 0.01144 0.01255 0.35% Castro::initMFs() 1 0.006879 0.008109 0.01061 0.29% Amr::writePlotFile() 2 0.006767 0.009413 0.01036 0.29% Castro::construct_old_gravity_source() 10 0.006804 0.009625 0.01027 0.29% StateData::define() 4 0.005727 0.006669 0.008464 0.24% Castro::construct_new_source() 50 0.005629 0.006215 0.006546 0.18% Castro::enforce_min_density() 62 0.005821 0.006054 0.006357 0.18% main() 1 0.005152 0.00579 0.006109 0.17% Gravity::get_new_grav_vector() 11 0.003058 0.003911 0.006107 0.17% Castro::swap_state_time_levels() 10 0.003342 0.004485 0.004736 0.13% Amr::coarseTimeStep() 10 0.001399 0.002784 0.003849 0.11% Castro::buildMetrics() 1 0.001614 0.001904 0.002426 0.07% Gravity::get_old_grav_vector() 10 0.001566 0.002006 0.002413 0.07% Castro::finalize_do_advance() 10 0.0005881 0.001725 0.00221 0.06% Castro::expand_state() 10 0.0007103 0.0008646 0.00102 0.03% Amr::InitAmr() 1 0.000285 0.0003618 0.0004971 0.01% Amr::timeStep() 10 0.0002039 0.0002477 0.0004419 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000286 0.0003041 0.0003375 0.01% Castro::do_new_sources() 10 5.922e-05 8.946e-05 0.0002523 0.01% DistributionMapping::LeastUsedCPUs() 1 7.135e-06 0.0001609 0.0002408 0.01% Castro::do_old_sources() 10 0.0001438 0.0001724 0.0001989 0.01% Castro::clean_state() 62 0.0001415 0.0001605 0.0001896 0.01% StateDataPhysBCFunct::() 41 8.786e-05 0.000111 0.0001429 0.00% Castro::enforce_consistent_e() 1 8.225e-05 9.418e-05 0.0001394 0.00% Castro::do_advance_ctu() 10 0.0001059 0.0001172 0.0001272 0.00% Castro::finalize_advance() 10 9.224e-05 0.0001087 0.0001204 0.00% FillPatchSingleLevel 41 6.72e-05 7.97e-05 9.337e-05 0.00% FabArray::ParallelCopy() 41 7.037e-05 8.016e-05 8.758e-05 0.00% Castro::construct_old_source() 50 5.124e-05 6.797e-05 8.603e-05 0.00% Castro::Castro() 1 5.446e-05 6.671e-05 7.544e-05 0.00% Amr::FinalizeInit() 1 3.554e-06 1.409e-05 7.408e-05 0.00% FabArrayBase::getCPC() 41 4.148e-05 6.195e-05 7.161e-05 0.00% Castro::subcycle_advance_ctu() 10 4.499e-05 5.296e-05 6.803e-05 0.00% Amr::writeSmallPlotFile() 1 2.518e-05 5.525e-05 6.663e-05 0.00% Castro::construct_new_gravity() 10 4.167e-05 5.001e-05 6.484e-05 0.00% Castro::advance() 10 3.734e-05 4.361e-05 5.859e-05 0.00% Castro::construct_old_gravity() 10 4.056e-05 4.551e-05 5.072e-05 0.00% Castro::apply_source_to_state() 20 3.747e-05 4.504e-05 4.996e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.735e-05 2.121e-05 3.177e-05 0.00% Castro::enforce_speed_limit() 62 2.379e-05 2.645e-05 3.004e-05 0.00% Castro::check_for_nan() 20 1.975e-05 2.341e-05 2.926e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.451e-05 2.717e-05 0.00% Castro::retry_advance_ctu() 10 6.325e-06 9.459e-06 2.337e-05 0.00% Castro::post_timestep() 10 1.366e-05 1.601e-05 1.872e-05 0.00% Amr::defBaseLevel() 1 1.32e-05 1.533e-05 1.795e-05 0.00% Gravity::swapTimeLevels() 10 1.084e-05 1.394e-05 1.708e-05 0.00% Amr::initSubcycle() 1 8.528e-06 1.055e-05 1.468e-05 0.00% Gravity::set_mass_offset() 10 9.274e-06 1.19e-05 1.347e-05 0.00% Castro::computeNewDt() 9 9.778e-06 1.15e-05 1.331e-05 0.00% Castro::FluxRegCrseInit 10 7.228e-06 8.329e-06 9.971e-06 0.00% Castro::create_source_corrector() 10 7.064e-06 8.541e-06 9.448e-06 0.00% Castro::post_regrid() 1 1.926e-06 3.551e-06 7.38e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.929e-06 5.447e-06 7.306e-06 0.00% Amr::init() 1 1.944e-06 2.883e-06 6.746e-06 0.00% Castro::post_init() 1 3.253e-06 4.165e-06 6.002e-06 0.00% Amr::InitializeInit() 1 1.852e-06 2.681e-06 5.554e-06 0.00% Castro::computeInitialDt() 2 3.707e-06 4.395e-06 4.691e-06 0.00% Castro::FluxRegFineAdd() 10 1.952e-06 2.159e-06 2.446e-06 0.00% Amr::initialInit() 1 1.464e-06 1.793e-06 2.37e-06 0.00% DistributionMapping::Distribute() 1 8.76e-07 1.113e-06 1.297e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.597 3.598 3.598 100.00% Amr::coarseTimeStep() 10 3.353 3.353 3.353 93.19% Amr::timeStep() 10 3.34 3.341 3.342 92.88% Castro::advance() 10 3.324 3.325 3.325 92.41% Castro::subcycle_advance_ctu() 10 3.237 3.249 3.261 90.62% Castro::do_advance_ctu() 10 3.237 3.249 3.261 90.62% Castro::construct_ctu_hydro_source() 10 2.466 2.469 2.473 68.71% Gravity::make_radial_gravity() 21 0.3374 0.3427 0.3541 9.84% Gravity::get_new_grav_vector() 11 0.2267 0.2301 0.2325 6.46% Amr::init() 1 0.2282 0.2283 0.2284 6.35% Amr::initialInit() 1 0.2117 0.2121 0.2124 5.90% Castro::construct_old_gravity() 10 0.19 0.1963 0.2056 5.71% Gravity::get_old_grav_vector() 10 0.1893 0.1957 0.205 5.70% Castro::construct_new_gravity() 10 0.2004 0.203 0.2046 5.69% FillPatchIterator::Initialize 41 0.1563 0.1798 0.201 5.59% Castro::initialize_do_advance() 10 0.164 0.1788 0.1877 5.22% Amr::InitializeInit() 1 0.05902 0.1104 0.1811 5.03% Amr::defBaseLevel() 1 0.05902 0.1104 0.1811 5.03% Castro::estTimeStep() 21 0.02183 0.105 0.1632 4.54% FillPatchSingleLevel 41 0.1161 0.1352 0.1628 4.52% Castro::initData() 1 0.04237 0.09164 0.1577 4.38% Amr::FinalizeInit() 1 0.03064 0.1017 0.1534 4.26% Castro::expand_state() 10 0.1054 0.1239 0.1341 3.73% FabArray::ParallelCopy() 41 0.08026 0.09769 0.1264 3.51% Castro::clean_state() 62 0.1129 0.1175 0.1245 3.46% Castro::computeInitialDt() 2 0.002105 0.07297 0.1244 3.46% check_for_negative_density() 10 0.04728 0.07105 0.1207 3.35% Castro::do_old_sources() 10 0.09035 0.0936 0.09577 2.66% FabArray::ParallelCopy_finish() 41 0.03841 0.05608 0.09092 2.53% Castro::initialize_advance() 10 0.05884 0.07173 0.08414 2.34% amrex::Copy() 193 0.06448 0.07792 0.08411 2.34% FabArray::setVal() 143 0.0602 0.06963 0.08348 2.32% Castro::do_new_sources() 10 0.05978 0.06721 0.07942 2.21% Castro::computeTemp() 63 0.06606 0.07013 0.07647 2.13% Castro::reset_internal_energy(MultiFab) 63 0.04838 0.05068 0.05513 1.53% Castro::reset_internal_energy(Fab) 1008 0.0481 0.05037 0.05482 1.52% Castro::normalize_species() 62 0.04098 0.04218 0.04456 1.24% FabArray::ParallelCopy_nowait() 41 0.03537 0.04153 0.04379 1.22% StateDataPhysBCFunct::() 41 0.03505 0.03743 0.03954 1.10% StateData::FillBoundary(geom) 41 0.03491 0.03732 0.03944 1.10% Castro::construct_new_source() 50 0.02898 0.03172 0.03693 1.03% Castro::finalize_do_advance() 10 0.01306 0.02526 0.03305 0.92% Castro::construct_new_gravity_source() 10 0.02276 0.0255 0.03039 0.84% Gravity::interpolate_monopole_grav() 21 0.0285 0.0288 0.02941 0.82% Castro::post_init() 1 0.02788 0.02825 0.02848 0.79% Amr::writePlotFile() 2 0.02629 0.02652 0.02672 0.74% VisMF::Write(FabArray) 2 0.0136 0.01439 0.01695 0.47% Castro::post_timestep() 10 0.01542 0.01587 0.01654 0.46% Castro::Castro() 1 0.01041 0.01189 0.01485 0.41% Castro::apply_source_to_state() 20 0.01066 0.01285 0.01372 0.38% FabArray::Saxpy() 20 0.01062 0.0128 0.01367 0.38% FabArray::setDomainBndry() 41 0.008838 0.01129 0.01261 0.35% Castro::check_for_nan() 20 0.01075 0.01147 0.01257 0.35% MultiFab::contains_nan() 20 0.01073 0.01144 0.01255 0.35% Castro::initMFs() 1 0.006879 0.008109 0.01061 0.29% Castro::construct_old_source() 50 0.006855 0.009693 0.01034 0.29% Castro::construct_old_gravity_source() 10 0.006804 0.009625 0.01027 0.29% Castro::computeNewDt() 9 0.008484 0.008495 0.008502 0.24% AmrLevel::AmrLevel(dm) 1 0.005748 0.00669 0.008493 0.24% StateData::define() 4 0.005727 0.006669 0.008464 0.24% Castro::enforce_min_density() 62 0.005821 0.006054 0.006357 0.18% Castro::swap_state_time_levels() 10 0.003342 0.004485 0.004736 0.13% Castro::finalize_advance() 10 0.003135 0.003615 0.004572 0.13% Castro::buildMetrics() 1 0.001723 0.00205 0.002642 0.07% Castro::post_regrid() 1 0.001545 0.001635 0.002 0.06% Amr::InitAmr() 1 0.0002943 0.0003723 0.0005108 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.234e-05 0.0001674 0.0002491 0.01% DistributionMapping::LeastUsedCPUs() 1 7.135e-06 0.0001609 0.0002408 0.01% Castro::enforce_consistent_e() 1 8.225e-05 9.418e-05 0.0001394 0.00% FabArrayBase::getCPC() 41 6.81e-05 8.646e-05 9.878e-05 0.00% Amr::writeSmallPlotFile() 1 2.518e-05 5.525e-05 6.663e-05 0.00% Castro::enforce_speed_limit() 62 2.379e-05 2.645e-05 3.004e-05 0.00% FabArrayBase::CPC::define() 2 2.005e-05 2.451e-05 2.717e-05 0.00% Castro::retry_advance_ctu() 10 6.325e-06 9.459e-06 2.337e-05 0.00% Gravity::swapTimeLevels() 10 1.084e-05 1.394e-05 1.708e-05 0.00% Amr::initSubcycle() 1 8.528e-06 1.055e-05 1.468e-05 0.00% Gravity::set_mass_offset() 10 9.274e-06 1.19e-05 1.347e-05 0.00% Castro::FluxRegCrseInit 10 7.228e-06 8.329e-06 9.971e-06 0.00% Castro::create_source_corrector() 10 7.064e-06 8.541e-06 9.448e-06 0.00% Castro::FluxRegFineAdd() 10 1.952e-06 2.159e-06 2.446e-06 0.00% DistributionMapping::Distribute() 1 8.76e-07 1.113e-06 1.297e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-26-g93e3d1d990bd) finalized