MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-28-g4d6fdde3cbc5) initialized Starting run at 05:20:57 UTC on 2023-06-27. Successfully read inputs file ... Castro git describe: 23.06-36-g90afb40ca AMReX git describe: 23.06-28-g4d6fdde3c Microphysics git describe: 23.06-33-g716dc7f9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016286514 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364595037 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.37375443 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.347170778 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.372967214 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361448297 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343274923 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.327552849 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.328391212 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.329300873 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.328986673 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010779065 seconds Ending run at 05:21:01 UTC on 2023-06-27. Run time = 3.725342193 Run time without initialization = 3.495277617 Average number of zones advanced per microsecond: 0.750 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.725 ... 3.725 ... 3.725 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3034 2.4112 2.4773 66.50% Gravity::make_radial_gravity() 21 0.3229 0.3332 0.3535 9.49% check_for_negative_density() 10 0.07984 0.1468 0.2616 7.02% Castro::initData() 1 0.03999 0.09576 0.1549 4.16% Castro::estTimeStep() 21 0.033 0.0943 0.1517 4.07% FabArray::ParallelCopy_finish() 41 0.04866 0.06021 0.1027 2.76% amrex::Copy() 193 0.05825 0.07949 0.08526 2.29% FabArray::setVal() 143 0.05584 0.06662 0.07348 1.97% Castro::reset_internal_energy(Fab) 1008 0.04928 0.05054 0.05247 1.41% FabArray::ParallelCopy_nowait() 41 0.03446 0.0428 0.04622 1.24% Castro::normalize_species() 62 0.0414 0.04275 0.04563 1.22% StateData::FillBoundary(geom) 41 0.03566 0.03805 0.04125 1.11% FillPatchIterator::Initialize 41 0.02899 0.03534 0.03792 1.02% Gravity::interpolate_monopole_grav() 21 0.02861 0.02889 0.02917 0.78% Castro::construct_new_gravity_source() 10 0.02414 0.02507 0.02726 0.73% Castro::computeTemp() 63 0.01905 0.02001 0.02069 0.56% Castro::initialize_do_advance() 10 0.01224 0.01816 0.01963 0.53% VisMF::Write(FabArray) 2 0.0139 0.01471 0.01821 0.49% FabArray::Saxpy() 20 0.009531 0.01288 0.01459 0.39% Castro::initialize_advance() 10 0.003696 0.009765 0.0138 0.37% FabArray::setDomainBndry() 41 0.00823 0.01206 0.0136 0.37% MultiFab::contains_nan() 20 0.0111 0.01178 0.01233 0.33% Castro::construct_old_gravity_source() 10 0.006498 0.00976 0.01105 0.30% Amr::writePlotFile() 2 0.006575 0.009898 0.01099 0.29% Castro::initMFs() 1 0.006861 0.008638 0.01022 0.27% StateData::define() 4 0.005653 0.007149 0.008448 0.23% Castro::construct_new_source() 50 0.005508 0.006305 0.006752 0.18% Castro::enforce_min_density() 62 0.005754 0.006158 0.006513 0.17% main() 1 0.005578 0.006025 0.006293 0.17% Castro::swap_state_time_levels() 10 0.003379 0.004561 0.004758 0.13% Gravity::get_new_grav_vector() 11 0.002999 0.003685 0.00408 0.11% Amr::coarseTimeStep() 10 0.002251 0.002856 0.00346 0.09% Gravity::get_old_grav_vector() 10 0.001589 0.00216 0.002747 0.07% Castro::buildMetrics() 1 0.001596 0.002026 0.002409 0.06% Castro::finalize_do_advance() 10 0.0006064 0.001665 0.001988 0.05% Castro::expand_state() 10 0.0007984 0.0009655 0.001129 0.03% Amr::InitAmr() 1 0.0002863 0.0004128 0.0005127 0.01% Amr::timeStep() 10 0.0001801 0.000234 0.0004742 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002857 0.0003018 0.0003465 0.01% DistributionMapping::LeastUsedCPUs() 1 8.009e-06 0.0001223 0.0002643 0.01% Castro::do_old_sources() 10 0.0001474 0.0001744 0.000214 0.01% Castro::clean_state() 62 0.0001471 0.0001595 0.0001769 0.00% Castro::enforce_consistent_e() 1 7.867e-05 0.0001136 0.0001628 0.00% Castro::do_advance_ctu() 10 0.0001073 0.0001225 0.0001432 0.00% StateDataPhysBCFunct::() 41 9.328e-05 0.0001058 0.0001384 0.00% Castro::finalize_advance() 10 8.774e-05 0.0001084 0.0001295 0.00% FabArray::ParallelCopy() 41 7.133e-05 7.942e-05 9.467e-05 0.00% Castro::construct_old_source() 50 4.985e-05 6.947e-05 9.283e-05 0.00% Castro::Castro() 1 5.192e-05 7.253e-05 9.072e-05 0.00% FillPatchSingleLevel 41 7.085e-05 7.849e-05 8.688e-05 0.00% Castro::do_new_sources() 10 5.383e-05 6.711e-05 8.146e-05 0.00% FabArrayBase::getCPC() 41 4.275e-05 6.051e-05 7.984e-05 0.00% Amr::FinalizeInit() 1 3.535e-06 1.486e-05 7.689e-05 0.00% Amr::writeSmallPlotFile() 1 2.536e-05 5.176e-05 6.558e-05 0.00% Castro::subcycle_advance_ctu() 10 4.328e-05 5.114e-05 6.101e-05 0.00% Castro::construct_new_gravity() 10 3.955e-05 4.702e-05 6.071e-05 0.00% Castro::advance() 10 3.667e-05 4.236e-05 5.687e-05 0.00% Castro::construct_old_gravity() 10 4.11e-05 4.78e-05 5.606e-05 0.00% Castro::apply_source_to_state() 20 3.39e-05 4.461e-05 5.199e-05 0.00% Castro::create_source_corrector() 10 5.976e-06 1.375e-05 4.968e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.565e-05 2.611e-05 3.476e-05 0.00% FabArrayBase::CPC::define() 2 1.908e-05 2.549e-05 3.225e-05 0.00% Castro::enforce_speed_limit() 62 2.333e-05 2.718e-05 3.218e-05 0.00% Castro::check_for_nan() 20 1.966e-05 2.369e-05 3.052e-05 0.00% Amr::defBaseLevel() 1 1.314e-05 1.862e-05 2.817e-05 0.00% Castro::post_timestep() 10 1.257e-05 1.531e-05 1.742e-05 0.00% Gravity::swapTimeLevels() 10 1.049e-05 1.374e-05 1.651e-05 0.00% Amr::initSubcycle() 1 8.842e-06 1.188e-05 1.539e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.709e-06 6.743e-06 1.476e-05 0.00% Castro::computeNewDt() 9 9.398e-06 1.111e-05 1.35e-05 0.00% Gravity::set_mass_offset() 10 8.821e-06 1.042e-05 1.199e-05 0.00% Amr::InitializeInit() 1 1.995e-06 3.718e-06 1.072e-05 0.00% Castro::FluxRegCrseInit 10 6.156e-06 8.545e-06 1.041e-05 0.00% Amr::initialInit() 1 1.361e-06 2.653e-06 9.006e-06 0.00% Castro::retry_advance_ctu() 10 6.317e-06 7.461e-06 8.426e-06 0.00% Castro::post_regrid() 1 1.693e-06 4.25e-06 7.88e-06 0.00% Castro::computeInitialDt() 2 4.137e-06 4.775e-06 5.191e-06 0.00% Castro::post_init() 1 3.063e-06 3.746e-06 4.78e-06 0.00% Amr::init() 1 2.1e-06 2.465e-06 3.384e-06 0.00% Castro::FluxRegFineAdd() 10 1.994e-06 2.288e-06 2.928e-06 0.00% DistributionMapping::Distribute() 1 8.08e-07 1.082e-06 1.332e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.725 3.725 3.725 100.00% Amr::coarseTimeStep() 10 3.478 3.478 3.478 93.37% Amr::timeStep() 10 3.465 3.466 3.466 93.04% Castro::advance() 10 3.449 3.449 3.449 92.59% Castro::subcycle_advance_ctu() 10 3.369 3.375 3.387 90.92% Castro::do_advance_ctu() 10 3.369 3.375 3.387 90.92% Castro::construct_ctu_hydro_source() 10 2.576 2.58 2.587 69.43% Gravity::make_radial_gravity() 21 0.3414 0.3503 0.3648 9.79% check_for_negative_density() 10 0.07984 0.1468 0.2616 7.02% Gravity::get_new_grav_vector() 11 0.228 0.2303 0.232 6.23% Amr::init() 1 0.2294 0.2295 0.2296 6.16% Castro::construct_old_gravity() 10 0.1976 0.2064 0.218 5.85% Gravity::get_old_grav_vector() 10 0.1969 0.2058 0.2174 5.84% Amr::initialInit() 1 0.2128 0.213 0.2134 5.73% FillPatchIterator::Initialize 41 0.1779 0.1888 0.2104 5.65% Castro::construct_new_gravity() 10 0.2017 0.2031 0.2041 5.48% Castro::initialize_do_advance() 10 0.1737 0.1827 0.1902 5.11% Amr::InitializeInit() 1 0.05972 0.1202 0.1821 4.89% Amr::defBaseLevel() 1 0.05972 0.1202 0.1821 4.89% FillPatchSingleLevel 41 0.1313 0.1414 0.1732 4.65% Castro::initData() 1 0.0436 0.1002 0.1587 4.26% Amr::FinalizeInit() 1 0.0309 0.09287 0.1534 4.12% Castro::estTimeStep() 21 0.033 0.0943 0.1517 4.07% FabArray::ParallelCopy() 41 0.09442 0.1032 0.1374 3.69% Castro::expand_state() 10 0.1157 0.1268 0.134 3.60% Castro::computeInitialDt() 2 0.0021 0.06419 0.1246 3.35% Castro::clean_state() 62 0.1167 0.1188 0.1223 3.28% FabArray::ParallelCopy_finish() 41 0.04866 0.06021 0.1027 2.76% Castro::do_old_sources() 10 0.09548 0.09909 0.1024 2.75% amrex::Copy() 193 0.05825 0.07949 0.08526 2.29% Castro::initialize_advance() 10 0.05736 0.07024 0.0762 2.05% FabArray::setVal() 143 0.05584 0.06662 0.07348 1.97% Castro::computeTemp() 63 0.06939 0.07086 0.07312 1.96% Castro::do_new_sources() 10 0.05945 0.06506 0.07141 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04957 0.05084 0.05277 1.42% Castro::reset_internal_energy(Fab) 1008 0.04928 0.05054 0.05247 1.41% FabArray::ParallelCopy_nowait() 41 0.03457 0.04289 0.04631 1.24% Castro::normalize_species() 62 0.0414 0.04275 0.04563 1.22% StateDataPhysBCFunct::() 41 0.03576 0.03816 0.04136 1.11% StateData::FillBoundary(geom) 41 0.03566 0.03805 0.04125 1.11% Castro::construct_new_source() 50 0.0297 0.03137 0.03334 0.90% Gravity::interpolate_monopole_grav() 21 0.02861 0.02889 0.02917 0.78% Castro::finalize_do_advance() 10 0.01667 0.02316 0.02891 0.78% Castro::post_init() 1 0.02784 0.02817 0.02836 0.76% Amr::writePlotFile() 2 0.02714 0.02732 0.02757 0.74% Castro::construct_new_gravity_source() 10 0.02414 0.02507 0.02726 0.73% VisMF::Write(FabArray) 2 0.0139 0.01471 0.01821 0.49% Castro::post_timestep() 10 0.01576 0.01625 0.01668 0.45% Castro::Castro() 1 0.01023 0.01266 0.01496 0.40% Castro::apply_source_to_state() 20 0.009577 0.01293 0.01464 0.39% FabArray::Saxpy() 20 0.009531 0.01288 0.01459 0.39% FabArray::setDomainBndry() 41 0.00823 0.01206 0.0136 0.37% Castro::check_for_nan() 20 0.01112 0.01181 0.01235 0.33% MultiFab::contains_nan() 20 0.0111 0.01178 0.01233 0.33% Castro::construct_old_source() 50 0.006551 0.009829 0.01114 0.30% Castro::construct_old_gravity_source() 10 0.006498 0.00976 0.01105 0.30% Castro::initMFs() 1 0.006861 0.008638 0.01022 0.27% Castro::computeNewDt() 9 0.008616 0.008628 0.008639 0.23% AmrLevel::AmrLevel(dm) 1 0.005681 0.007175 0.008474 0.23% StateData::define() 4 0.005653 0.007149 0.008448 0.23% Castro::enforce_min_density() 62 0.005754 0.006158 0.006513 0.17% Castro::swap_state_time_levels() 10 0.003379 0.004561 0.004758 0.13% Castro::finalize_advance() 10 0.003294 0.003491 0.003949 0.11% Castro::buildMetrics() 1 0.001708 0.002197 0.002638 0.07% Castro::post_regrid() 1 0.001527 0.001644 0.00203 0.05% Amr::InitAmr() 1 0.0002953 0.0004247 0.0005267 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.312e-05 0.0001301 0.0002786 0.01% DistributionMapping::LeastUsedCPUs() 1 8.009e-06 0.0001223 0.0002643 0.01% Castro::enforce_consistent_e() 1 7.867e-05 0.0001136 0.0001628 0.00% FabArrayBase::getCPC() 41 7.045e-05 8.6e-05 0.0001119 0.00% Amr::writeSmallPlotFile() 1 2.536e-05 5.176e-05 6.558e-05 0.00% Castro::create_source_corrector() 10 5.976e-06 1.375e-05 4.968e-05 0.00% FabArrayBase::CPC::define() 2 1.908e-05 2.549e-05 3.225e-05 0.00% Castro::enforce_speed_limit() 62 2.333e-05 2.718e-05 3.218e-05 0.00% Gravity::swapTimeLevels() 10 1.049e-05 1.374e-05 1.651e-05 0.00% Amr::initSubcycle() 1 8.842e-06 1.188e-05 1.539e-05 0.00% Gravity::set_mass_offset() 10 8.821e-06 1.042e-05 1.199e-05 0.00% Castro::FluxRegCrseInit 10 6.156e-06 8.545e-06 1.041e-05 0.00% Castro::retry_advance_ctu() 10 6.317e-06 7.461e-06 8.426e-06 0.00% Castro::FluxRegFineAdd() 10 1.994e-06 2.288e-06 2.928e-06 0.00% DistributionMapping::Distribute() 1 8.08e-07 1.082e-06 1.332e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-28-g4d6fdde3cbc5) finalized