MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-29-g0236a3732cc8) initialized Starting run at 05:21:05 UTC on 2023-06-28. Successfully read inputs file ... Castro git describe: 23.06-37-g46f8579c6 AMReX git describe: 23.06-29-g0236a3732 Microphysics git describe: 23.06-33-g716dc7f9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015577664 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36367231 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.358725887 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33639105 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337795318 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.372153335 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.371218731 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.326226753 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.327078874 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.325520694 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.326313451 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011161738 seconds Ending run at 05:21:09 UTC on 2023-06-28. Run time = 3.666676986 Run time without initialization = 3.463312194 Average number of zones advanced per microsecond: 0.757 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.666 ... 3.667 ... 3.667 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3276 2.3753 2.4275 66.20% Gravity::make_radial_gravity() 21 0.322 0.3344 0.3445 9.39% check_for_negative_density() 10 0.0876 0.1445 0.195 5.32% Castro::estTimeStep() 21 0.02645 0.08965 0.14 3.82% Castro::initData() 1 0.04025 0.08174 0.1321 3.60% FabArray::ParallelCopy_finish() 41 0.0401 0.05915 0.09843 2.68% amrex::Copy() 193 0.06635 0.07846 0.08763 2.39% FabArray::setVal() 143 0.06067 0.06914 0.08256 2.25% Castro::reset_internal_energy(Fab) 1008 0.04833 0.05057 0.05344 1.46% FabArray::ParallelCopy_nowait() 41 0.03758 0.042 0.04428 1.21% Castro::normalize_species() 62 0.04142 0.0423 0.04396 1.20% StateData::FillBoundary(geom) 41 0.03407 0.03806 0.04151 1.13% FillPatchIterator::Initialize 41 0.02839 0.03411 0.03616 0.99% Castro::construct_new_gravity_source() 10 0.02314 0.02587 0.02942 0.80% Gravity::interpolate_monopole_grav() 21 0.02811 0.02845 0.02877 0.78% Castro::initialize_do_advance() 10 0.01247 0.01866 0.02277 0.62% Castro::computeTemp() 63 0.01928 0.01994 0.02071 0.56% VisMF::Write(FabArray) 2 0.0133 0.01409 0.01715 0.47% Castro::initialize_advance() 10 0.004686 0.01055 0.01437 0.39% FabArray::Saxpy() 20 0.0104 0.01249 0.01366 0.37% FabArray::setDomainBndry() 41 0.009136 0.01163 0.01337 0.36% MultiFab::contains_nan() 20 0.01078 0.01164 0.01248 0.34% Amr::writePlotFile() 2 0.007012 0.0104 0.01192 0.32% Castro::initMFs() 1 0.006865 0.008053 0.01041 0.28% Castro::construct_old_gravity_source() 10 0.007042 0.009635 0.01039 0.28% StateData::define() 4 0.005741 0.006611 0.008452 0.23% Castro::enforce_min_density() 62 0.005781 0.006146 0.006469 0.18% Castro::construct_new_source() 50 0.006117 0.006233 0.00639 0.17% main() 1 0.005726 0.006044 0.006314 0.17% Gravity::get_new_grav_vector() 11 0.003172 0.004216 0.006049 0.16% Castro::swap_state_time_levels() 10 0.003355 0.004426 0.004815 0.13% Amr::coarseTimeStep() 10 0.001788 0.002554 0.003104 0.08% Gravity::get_old_grav_vector() 10 0.001655 0.002135 0.002754 0.08% Castro::buildMetrics() 1 0.001601 0.001878 0.002408 0.07% Castro::finalize_do_advance() 10 0.000598 0.001547 0.001945 0.05% Castro::expand_state() 10 0.000567 0.001015 0.001139 0.03% Amr::timeStep() 10 0.0001672 0.0002366 0.0004976 0.01% Amr::InitAmr() 1 0.0002641 0.0003412 0.0004812 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000294 0.0003108 0.0003355 0.01% DistributionMapping::LeastUsedCPUs() 1 6.101e-06 0.0001655 0.0002457 0.01% Castro::clean_state() 62 0.0001562 0.0001676 0.0002008 0.01% Castro::do_old_sources() 10 0.0001478 0.0001672 0.0001828 0.00% Castro::do_advance_ctu() 10 9.937e-05 0.0001259 0.0001576 0.00% StateDataPhysBCFunct::() 41 9.048e-05 0.0001166 0.000157 0.00% Castro::finalize_advance() 10 9.653e-05 0.0001108 0.0001362 0.00% FabArray::ParallelCopy() 41 7.546e-05 8.165e-05 9.316e-05 0.00% Castro::enforce_consistent_e() 1 8.203e-05 8.553e-05 9.167e-05 0.00% Castro::Castro() 1 5.444e-05 6.821e-05 9.018e-05 0.00% FabArrayBase::getCPC() 41 4.662e-05 6.291e-05 8.659e-05 0.00% FillPatchSingleLevel 41 7.248e-05 7.893e-05 8.617e-05 0.00% Castro::construct_old_source() 50 5.269e-05 6.988e-05 8.006e-05 0.00% Castro::do_new_sources() 10 5.492e-05 6.361e-05 7.341e-05 0.00% Amr::FinalizeInit() 1 3.911e-06 1.427e-05 7.12e-05 0.00% Amr::writeSmallPlotFile() 1 2.814e-05 5.025e-05 6.493e-05 0.00% Castro::subcycle_advance_ctu() 10 4.202e-05 5.071e-05 6.15e-05 0.00% Castro::construct_new_gravity() 10 3.94e-05 4.936e-05 5.835e-05 0.00% Castro::construct_old_gravity() 10 3.948e-05 4.749e-05 5.672e-05 0.00% Castro::advance() 10 3.654e-05 4.247e-05 5.419e-05 0.00% Castro::apply_source_to_state() 20 4.113e-05 4.479e-05 5.061e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.863e-05 2.822e-05 4.738e-05 0.00% Castro::enforce_speed_limit() 62 2.524e-05 2.736e-05 3.21e-05 0.00% FabArrayBase::CPC::define() 2 2.123e-05 2.636e-05 3.134e-05 0.00% Castro::check_for_nan() 20 2.005e-05 2.34e-05 2.52e-05 0.00% Amr::defBaseLevel() 1 1.343e-05 1.72e-05 1.993e-05 0.00% Castro::post_timestep() 10 1.304e-05 1.585e-05 1.865e-05 0.00% Gravity::swapTimeLevels() 10 1.1e-05 1.42e-05 1.636e-05 0.00% Amr::initSubcycle() 1 8.687e-06 1.042e-05 1.461e-05 0.00% Gravity::set_mass_offset() 10 1.002e-05 1.191e-05 1.375e-05 0.00% Castro::computeNewDt() 9 8.267e-06 1.069e-05 1.213e-05 0.00% Castro::FluxRegCrseInit 10 7.352e-06 8.961e-06 1.039e-05 0.00% Castro::create_source_corrector() 10 8.157e-06 9.323e-06 1.03e-05 0.00% Castro::retry_advance_ctu() 10 6.618e-06 7.25e-06 9.113e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.882e-06 5.114e-06 6.708e-06 0.00% Castro::post_regrid() 1 2.049e-06 3.542e-06 5.889e-06 0.00% Castro::computeInitialDt() 2 3.468e-06 4.491e-06 5.19e-06 0.00% Castro::post_init() 1 2.843e-06 3.928e-06 4.945e-06 0.00% Amr::InitializeInit() 1 1.99e-06 2.431e-06 4.842e-06 0.00% Amr::init() 1 1.873e-06 2.481e-06 3.052e-06 0.00% Amr::initialInit() 1 1.448e-06 1.993e-06 2.47e-06 0.00% Castro::FluxRegFineAdd() 10 1.916e-06 2.118e-06 2.301e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.079e-06 1.335e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.666 3.666 3.667 100.00% Amr::coarseTimeStep() 10 3.446 3.446 3.446 93.98% Amr::timeStep() 10 3.433 3.433 3.434 93.66% Castro::advance() 10 3.416 3.417 3.418 93.22% Castro::subcycle_advance_ctu() 10 3.332 3.342 3.352 91.41% Castro::do_advance_ctu() 10 3.332 3.342 3.352 91.41% Castro::construct_ctu_hydro_source() 10 2.538 2.542 2.549 69.51% Gravity::make_radial_gravity() 21 0.3379 0.3509 0.3575 9.75% Gravity::get_new_grav_vector() 11 0.229 0.2321 0.2347 6.40% FillPatchIterator::Initialize 41 0.164 0.1853 0.2123 5.79% Castro::construct_new_gravity() 10 0.2056 0.2079 0.2101 5.73% Castro::construct_old_gravity() 10 0.1973 0.2048 0.2099 5.72% Gravity::get_old_grav_vector() 10 0.1967 0.2041 0.2093 5.71% Amr::init() 1 0.2027 0.2029 0.2029 5.53% check_for_negative_density() 10 0.0876 0.1445 0.195 5.32% Castro::initialize_do_advance() 10 0.1677 0.1805 0.1886 5.14% Amr::initialInit() 1 0.1865 0.1869 0.1871 5.10% FillPatchSingleLevel 41 0.1239 0.1396 0.1744 4.76% Amr::InitializeInit() 1 0.06081 0.1042 0.1588 4.33% Amr::defBaseLevel() 1 0.06081 0.1042 0.1588 4.33% Castro::estTimeStep() 21 0.02645 0.08965 0.14 3.82% Castro::expand_state() 10 0.1096 0.1242 0.137 3.74% FabArray::ParallelCopy() 41 0.08331 0.1013 0.1362 3.72% Castro::initData() 1 0.04431 0.08553 0.1357 3.70% Amr::FinalizeInit() 1 0.0277 0.0827 0.1262 3.44% Castro::clean_state() 62 0.1158 0.1185 0.123 3.35% Castro::do_old_sources() 10 0.09222 0.09824 0.1011 2.76% Castro::computeInitialDt() 2 0.002006 0.0568 0.1001 2.73% FabArray::ParallelCopy_finish() 41 0.0401 0.05915 0.09843 2.68% amrex::Copy() 193 0.06635 0.07846 0.08763 2.39% FabArray::setVal() 143 0.06067 0.06914 0.08256 2.25% Castro::initialize_advance() 10 0.06075 0.07165 0.08125 2.22% Castro::do_new_sources() 10 0.05943 0.06644 0.07633 2.08% Castro::computeTemp() 63 0.06832 0.07082 0.07425 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04864 0.05088 0.05376 1.47% Castro::reset_internal_energy(Fab) 1008 0.04833 0.05057 0.05344 1.46% FabArray::ParallelCopy_nowait() 41 0.0377 0.04209 0.04437 1.21% Castro::normalize_species() 62 0.04142 0.0423 0.04396 1.20% StateDataPhysBCFunct::() 41 0.03419 0.03817 0.0416 1.13% StateData::FillBoundary(geom) 41 0.03407 0.03806 0.04151 1.13% Castro::construct_new_source() 50 0.0293 0.0321 0.03569 0.97% Castro::finalize_do_advance() 10 0.01522 0.0256 0.03355 0.91% Castro::construct_new_gravity_source() 10 0.02314 0.02587 0.02942 0.80% Gravity::interpolate_monopole_grav() 21 0.02811 0.02845 0.02877 0.78% Amr::writePlotFile() 2 0.027 0.02721 0.02742 0.75% Castro::post_init() 1 0.02524 0.02536 0.02548 0.69% VisMF::Write(FabArray) 2 0.0133 0.01409 0.01715 0.47% Castro::post_timestep() 10 0.01586 0.0162 0.01652 0.45% Castro::Castro() 1 0.01051 0.01183 0.01467 0.40% Castro::apply_source_to_state() 20 0.01045 0.01253 0.01371 0.37% FabArray::Saxpy() 20 0.0104 0.01249 0.01366 0.37% FabArray::setDomainBndry() 41 0.009136 0.01163 0.01337 0.36% Castro::check_for_nan() 20 0.0108 0.01166 0.0125 0.34% MultiFab::contains_nan() 20 0.01078 0.01164 0.01248 0.34% Castro::construct_old_source() 50 0.007095 0.009705 0.01046 0.29% Castro::initMFs() 1 0.006865 0.008053 0.01041 0.28% Castro::construct_old_gravity_source() 10 0.007042 0.009635 0.01039 0.28% Castro::computeNewDt() 9 0.00881 0.008819 0.008831 0.24% AmrLevel::AmrLevel(dm) 1 0.005768 0.006639 0.008492 0.23% StateData::define() 4 0.005741 0.006611 0.008452 0.23% Castro::enforce_min_density() 62 0.005781 0.006146 0.006469 0.18% Castro::swap_state_time_levels() 10 0.003355 0.004426 0.004815 0.13% Castro::finalize_advance() 10 0.002972 0.003585 0.004284 0.12% Castro::buildMetrics() 1 0.00172 0.002026 0.00263 0.07% Castro::post_regrid() 1 0.001516 0.001596 0.001662 0.05% Amr::InitAmr() 1 0.000273 0.0003516 0.0004946 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.132e-05 0.0001717 0.0002534 0.01% DistributionMapping::LeastUsedCPUs() 1 6.101e-06 0.0001655 0.0002457 0.01% FabArrayBase::getCPC() 41 7.279e-05 8.928e-05 0.0001175 0.00% Castro::enforce_consistent_e() 1 8.203e-05 8.553e-05 9.167e-05 0.00% Amr::writeSmallPlotFile() 1 2.814e-05 5.025e-05 6.493e-05 0.00% Castro::enforce_speed_limit() 62 2.524e-05 2.736e-05 3.21e-05 0.00% FabArrayBase::CPC::define() 2 2.123e-05 2.636e-05 3.134e-05 0.00% Gravity::swapTimeLevels() 10 1.1e-05 1.42e-05 1.636e-05 0.00% Amr::initSubcycle() 1 8.687e-06 1.042e-05 1.461e-05 0.00% Gravity::set_mass_offset() 10 1.002e-05 1.191e-05 1.375e-05 0.00% Castro::FluxRegCrseInit 10 7.352e-06 8.961e-06 1.039e-05 0.00% Castro::create_source_corrector() 10 8.157e-06 9.323e-06 1.03e-05 0.00% Castro::retry_advance_ctu() 10 6.618e-06 7.25e-06 9.113e-06 0.00% Castro::FluxRegFineAdd() 10 1.916e-06 2.118e-06 2.301e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.079e-06 1.335e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 45 B 124 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-29-g0236a3732cc8) finalized