MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-30-g4a4e8b3fb1b9) initialized Starting run at 05:35:43 UTC on 2023-06-29. Successfully read inputs file ... Castro git describe: 23.06-37-g46f8579c6 AMReX git describe: 23.06-30-g4a4e8b3fb Microphysics git describe: 23.06-33-g716dc7f9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015543473 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367758215 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.409242389 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.345572029 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339152747 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368250847 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336395365 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318115996 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314790143 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.32195626 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.320777825 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010164598 seconds Ending run at 05:35:46 UTC on 2023-06-29. Run time = 3.66162133 Run time without initialization = 3.460172179 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.66 ... 3.661 ... 3.662 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3488 2.3829 2.4387 66.60% Gravity::make_radial_gravity() 21 0.3305 0.3373 0.3499 9.56% check_for_negative_density() 10 0.07718 0.1362 0.1725 4.71% Castro::initData() 1 0.05619 0.0847 0.1269 3.46% Castro::estTimeStep() 21 0.04367 0.08228 0.1079 2.95% amrex::Copy() 193 0.06567 0.07904 0.08932 2.44% FabArray::setVal() 143 0.06231 0.06924 0.08021 2.19% FabArray::ParallelCopy_finish() 41 0.03633 0.05547 0.07993 2.18% Castro::reset_internal_energy(Fab) 1008 0.04907 0.05027 0.05211 1.42% Castro::normalize_species() 62 0.04113 0.04237 0.04399 1.20% FabArray::ParallelCopy_nowait() 41 0.03656 0.04178 0.04383 1.20% StateData::FillBoundary(geom) 41 0.0351 0.03766 0.04047 1.11% FillPatchIterator::Initialize 41 0.02953 0.03455 0.03651 1.00% Castro::construct_new_gravity_source() 10 0.02256 0.02575 0.03158 0.86% Gravity::interpolate_monopole_grav() 21 0.02815 0.02853 0.02896 0.79% Castro::computeTemp() 63 0.01761 0.0199 0.02135 0.58% Castro::initialize_do_advance() 10 0.01241 0.01765 0.02006 0.55% VisMF::Write(FabArray) 2 0.01326 0.01382 0.01635 0.45% Castro::initialize_advance() 10 0.009131 0.01148 0.01515 0.41% FabArray::Saxpy() 20 0.0105 0.01247 0.01346 0.37% FabArray::setDomainBndry() 41 0.008999 0.01174 0.01297 0.35% MultiFab::contains_nan() 20 0.01037 0.01128 0.01239 0.34% Amr::writePlotFile() 2 0.006825 0.009513 0.01079 0.29% Castro::initMFs() 1 0.00687 0.008583 0.01027 0.28% Castro::construct_old_gravity_source() 10 0.007317 0.009605 0.0102 0.28% StateData::define() 4 0.005854 0.007225 0.008601 0.23% main() 1 0.005312 0.006539 0.00716 0.20% Castro::enforce_min_density() 62 0.005906 0.006093 0.006474 0.18% Castro::construct_new_source() 50 0.005821 0.006017 0.00628 0.17% Castro::swap_state_time_levels() 10 0.003356 0.004418 0.004763 0.13% Amr::coarseTimeStep() 10 0.001232 0.003224 0.004285 0.12% Gravity::get_new_grav_vector() 11 0.003055 0.003788 0.004075 0.11% Gravity::get_old_grav_vector() 10 0.001612 0.002084 0.002544 0.07% Castro::buildMetrics() 1 0.001678 0.002048 0.002401 0.07% Castro::finalize_do_advance() 10 0.000635 0.00152 0.00183 0.05% Castro::expand_state() 10 0.0006684 0.001092 0.001266 0.03% Amr::InitAmr() 1 0.0003002 0.0004268 0.0006673 0.02% Amr::timeStep() 10 0.0001541 0.0002335 0.0004644 0.01% DistributionMapping::LeastUsedCPUs() 1 8.097e-06 0.0002701 0.0004166 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002874 0.0003123 0.0003333 0.01% Castro::do_old_sources() 10 0.0001513 0.0001733 0.0001993 0.01% Castro::clean_state() 62 0.0001547 0.000167 0.0001868 0.01% Castro::do_advance_ctu() 10 0.0001038 0.0001228 0.0001419 0.00% StateDataPhysBCFunct::() 41 8.499e-05 0.0001071 0.0001291 0.00% Castro::enforce_consistent_e() 1 8.641e-05 9.593e-05 0.0001221 0.00% Castro::finalize_advance() 10 8.036e-05 0.0001019 0.000115 0.00% Castro::Castro() 1 5.439e-05 8.046e-05 9.922e-05 0.00% FabArray::ParallelCopy() 41 6.699e-05 7.954e-05 8.905e-05 0.00% Castro::construct_old_source() 50 4.861e-05 6.937e-05 8.45e-05 0.00% FillPatchSingleLevel 41 6.049e-05 7.11e-05 7.73e-05 0.00% Amr::FinalizeInit() 1 3.534e-06 1.34e-05 7.555e-05 0.00% Castro::do_new_sources() 10 5.799e-05 6.414e-05 7.347e-05 0.00% Amr::writeSmallPlotFile() 1 3.286e-05 4.887e-05 6.361e-05 0.00% Castro::apply_source_to_state() 20 3.928e-05 4.779e-05 6.325e-05 0.00% Castro::subcycle_advance_ctu() 10 3.963e-05 4.948e-05 5.765e-05 0.00% Castro::advance() 10 3.408e-05 4.218e-05 5.742e-05 0.00% FabArrayBase::getCPC() 41 4.143e-05 4.801e-05 5.582e-05 0.00% Castro::construct_new_gravity() 10 4.07e-05 4.799e-05 5.549e-05 0.00% Castro::construct_old_gravity() 10 3.888e-05 4.541e-05 4.946e-05 0.00% FabArrayBase::CPC::define() 2 2.261e-05 2.652e-05 3.417e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.593e-05 2.484e-05 3.28e-05 0.00% Castro::enforce_speed_limit() 62 2.307e-05 2.54e-05 3.102e-05 0.00% Amr::defBaseLevel() 1 1.632e-05 1.967e-05 2.619e-05 0.00% Castro::check_for_nan() 20 2.219e-05 2.325e-05 2.459e-05 0.00% Castro::post_timestep() 10 1.249e-05 1.472e-05 1.741e-05 0.00% Gravity::swapTimeLevels() 10 1.283e-05 1.451e-05 1.715e-05 0.00% Amr::initSubcycle() 1 8.436e-06 1.213e-05 1.673e-05 0.00% Castro::computeNewDt() 9 9.232e-06 1.145e-05 1.528e-05 0.00% Gravity::set_mass_offset() 10 8.448e-06 1.168e-05 1.389e-05 0.00% Castro::create_source_corrector() 10 7.211e-06 9.128e-06 1.158e-05 0.00% Castro::FluxRegCrseInit 10 7.247e-06 9.205e-06 1.1e-05 0.00% Castro::retry_advance_ctu() 10 6.719e-06 7.574e-06 8.586e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.894e-06 4.691e-06 6.72e-06 0.00% Amr::InitializeInit() 1 1.931e-06 2.8e-06 6.47e-06 0.00% Castro::post_init() 1 2.795e-06 3.679e-06 4.674e-06 0.00% Castro::computeInitialDt() 2 3.777e-06 4.2e-06 4.618e-06 0.00% Castro::post_regrid() 1 2.062e-06 3.147e-06 4.197e-06 0.00% Amr::init() 1 1.769e-06 2.173e-06 2.582e-06 0.00% Castro::FluxRegFineAdd() 10 1.805e-06 2.1e-06 2.457e-06 0.00% Amr::initialInit() 1 1.449e-06 1.722e-06 1.901e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.118e-06 1.385e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.66 3.661 3.662 100.00% Amr::coarseTimeStep() 10 3.443 3.443 3.443 94.03% Amr::timeStep() 10 3.428 3.429 3.431 93.70% Castro::advance() 10 3.412 3.413 3.413 93.21% Castro::subcycle_advance_ctu() 10 3.328 3.335 3.34 91.22% Castro::do_advance_ctu() 10 3.328 3.335 3.34 91.22% Castro::construct_ctu_hydro_source() 10 2.538 2.541 2.543 69.46% Gravity::make_radial_gravity() 21 0.3473 0.3543 0.3636 9.93% Gravity::get_new_grav_vector() 11 0.235 0.2361 0.237 6.47% Castro::construct_old_gravity() 10 0.1994 0.2032 0.2113 5.77% Gravity::get_old_grav_vector() 10 0.1987 0.2026 0.2107 5.75% Castro::construct_new_gravity() 10 0.2086 0.2092 0.21 5.74% Amr::init() 1 0.2006 0.2009 0.201 5.49% FillPatchIterator::Initialize 41 0.167 0.1815 0.1935 5.29% Castro::initialize_do_advance() 10 0.1666 0.1783 0.1861 5.08% Amr::initialInit() 1 0.1849 0.1851 0.1853 5.06% check_for_negative_density() 10 0.07718 0.1362 0.1725 4.71% FillPatchSingleLevel 41 0.1187 0.1352 0.1548 4.23% Amr::InitializeInit() 1 0.08368 0.1089 0.1544 4.22% Amr::defBaseLevel() 1 0.08368 0.1089 0.1544 4.22% Castro::expand_state() 10 0.1119 0.1233 0.1317 3.60% Castro::initData() 1 0.05999 0.08858 0.1307 3.57% Castro::clean_state() 62 0.1144 0.1181 0.1234 3.37% FabArray::ParallelCopy() 41 0.0797 0.0974 0.1167 3.19% Castro::estTimeStep() 21 0.04367 0.08228 0.1079 2.95% Amr::FinalizeInit() 1 0.03076 0.07613 0.1014 2.77% Castro::do_old_sources() 10 0.09003 0.09533 0.09886 2.70% amrex::Copy() 193 0.06567 0.07904 0.08932 2.44% Castro::initialize_advance() 10 0.06879 0.07367 0.08141 2.22% FabArray::setVal() 143 0.06231 0.06924 0.08021 2.19% FabArray::ParallelCopy_finish() 41 0.03633 0.05547 0.07993 2.18% Castro::do_new_sources() 10 0.05899 0.06573 0.07828 2.14% Castro::computeTemp() 63 0.06748 0.07048 0.07377 2.01% Castro::computeInitialDt() 2 0.002049 0.0476 0.07273 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04937 0.05058 0.05242 1.43% Castro::reset_internal_energy(Fab) 1008 0.04907 0.05027 0.05211 1.42% Castro::normalize_species() 62 0.04113 0.04237 0.04399 1.20% FabArray::ParallelCopy_nowait() 41 0.03663 0.04186 0.04392 1.20% StateDataPhysBCFunct::() 41 0.03523 0.03777 0.04057 1.11% StateData::FillBoundary(geom) 41 0.0351 0.03766 0.04047 1.11% Castro::construct_new_source() 50 0.02844 0.03177 0.03786 1.03% Castro::finalize_do_advance() 10 0.0133 0.02673 0.03415 0.93% Castro::construct_new_gravity_source() 10 0.02256 0.02575 0.03158 0.86% Gravity::interpolate_monopole_grav() 21 0.02815 0.02853 0.02896 0.79% Castro::post_init() 1 0.02782 0.02797 0.0282 0.77% Amr::writePlotFile() 2 0.02588 0.02606 0.02623 0.72% Castro::post_timestep() 10 0.01548 0.01628 0.01739 0.47% VisMF::Write(FabArray) 2 0.01326 0.01382 0.01635 0.45% Castro::Castro() 1 0.01049 0.01279 0.01504 0.41% Castro::apply_source_to_state() 20 0.01054 0.01252 0.01351 0.37% FabArray::Saxpy() 20 0.0105 0.01247 0.01346 0.37% FabArray::setDomainBndry() 41 0.008999 0.01174 0.01297 0.35% Castro::check_for_nan() 20 0.01039 0.0113 0.01241 0.34% MultiFab::contains_nan() 20 0.01037 0.01128 0.01239 0.34% Castro::construct_old_source() 50 0.007366 0.009674 0.01028 0.28% Castro::initMFs() 1 0.00687 0.008583 0.01027 0.28% Castro::construct_old_gravity_source() 10 0.007317 0.009605 0.0102 0.28% Castro::computeNewDt() 9 0.009466 0.009481 0.009489 0.26% AmrLevel::AmrLevel(dm) 1 0.005872 0.00725 0.008627 0.24% StateData::define() 4 0.005854 0.007225 0.008601 0.23% Castro::enforce_min_density() 62 0.005906 0.006093 0.006474 0.18% Castro::swap_state_time_levels() 10 0.003356 0.004418 0.004763 0.13% Castro::finalize_advance() 10 0.002989 0.003527 0.004193 0.11% Castro::buildMetrics() 1 0.001792 0.002222 0.002623 0.07% Castro::post_regrid() 1 0.001594 0.001631 0.001661 0.05% Amr::InitAmr() 1 0.0003092 0.0004389 0.000682 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.328e-05 0.0002759 0.0004244 0.01% DistributionMapping::LeastUsedCPUs() 1 8.097e-06 0.0002701 0.0004166 0.01% Castro::enforce_consistent_e() 1 8.641e-05 9.593e-05 0.0001221 0.00% FabArrayBase::getCPC() 41 6.476e-05 7.453e-05 8.504e-05 0.00% Amr::writeSmallPlotFile() 1 3.286e-05 4.887e-05 6.361e-05 0.00% FabArrayBase::CPC::define() 2 2.261e-05 2.652e-05 3.417e-05 0.00% Castro::enforce_speed_limit() 62 2.307e-05 2.54e-05 3.102e-05 0.00% Gravity::swapTimeLevels() 10 1.283e-05 1.451e-05 1.715e-05 0.00% Amr::initSubcycle() 1 8.436e-06 1.213e-05 1.673e-05 0.00% Gravity::set_mass_offset() 10 8.448e-06 1.168e-05 1.389e-05 0.00% Castro::create_source_corrector() 10 7.211e-06 9.128e-06 1.158e-05 0.00% Castro::FluxRegCrseInit 10 7.247e-06 9.205e-06 1.1e-05 0.00% Castro::retry_advance_ctu() 10 6.719e-06 7.574e-06 8.586e-06 0.00% Castro::FluxRegFineAdd() 10 1.805e-06 2.1e-06 2.457e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.118e-06 1.385e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-30-g4a4e8b3fb1b9) finalized