MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-31-g9c256b12b89f) initialized Starting run at 05:35:37 UTC on 2023-06-30. Successfully read inputs file ... Castro git describe: 23.06-37-g46f8579c6 AMReX git describe: 23.06-31-g9c256b12b Microphysics git describe: 23.06-36-ga5ee71bb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015969527 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.388464774 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349828186 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335763137 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336410959 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.37074106 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343652122 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317960891 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317751214 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315885216 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316425849 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.043269133 seconds Ending run at 05:35:41 UTC on 2023-06-30. Run time = 3.63283019 Run time without initialization = 3.444122193 Average number of zones advanced per microsecond: 0.761 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.631 ... 3.632 ... 3.633 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2547 2.3642 2.4503 67.45% Gravity::make_radial_gravity() 21 0.3134 0.3255 0.3311 9.11% check_for_negative_density() 10 0.02897 0.1138 0.2253 6.20% Castro::estTimeStep() 21 0.02265 0.07337 0.1228 3.38% Castro::initData() 1 0.03886 0.07919 0.1201 3.31% FabArray::setVal() 143 0.06693 0.07687 0.08973 2.47% amrex::Copy() 193 0.0756 0.0798 0.08472 2.33% FabArray::ParallelCopy_finish() 41 0.03944 0.04848 0.0563 1.55% Castro::reset_internal_energy(Fab) 1008 0.04771 0.0501 0.05207 1.43% FabArray::ParallelCopy_nowait() 41 0.04076 0.04283 0.04404 1.21% Amr::writePlotFile() 2 0.03993 0.04293 0.04369 1.20% StateData::FillBoundary(geom) 41 0.03401 0.03787 0.04261 1.17% Castro::normalize_species() 62 0.04151 0.04184 0.04253 1.17% FillPatchIterator::Initialize 41 0.03047 0.03402 0.03632 1.00% Castro::construct_new_gravity_source() 10 0.02289 0.02632 0.03027 0.83% Gravity::interpolate_monopole_grav() 21 0.0285 0.02863 0.02882 0.79% Castro::initialize_do_advance() 10 0.01752 0.01912 0.02186 0.60% Castro::computeTemp() 63 0.01838 0.01973 0.02049 0.56% VisMF::Write(FabArray) 2 0.01323 0.01382 0.01655 0.46% Castro::initialize_advance() 10 0.009778 0.01275 0.01585 0.44% FabArray::Saxpy() 20 0.01221 0.0136 0.01424 0.39% FabArray::setDomainBndry() 41 0.009362 0.01164 0.01324 0.36% MultiFab::contains_nan() 20 0.009787 0.01092 0.01209 0.33% Castro::construct_old_gravity_source() 10 0.01021 0.01059 0.01094 0.30% Castro::initMFs() 1 0.007035 0.007538 0.008566 0.24% main() 1 0.005382 0.006278 0.007152 0.20% Castro::construct_new_source() 50 0.006226 0.006433 0.006688 0.18% StateData::define() 4 0.00593 0.006188 0.006616 0.18% Castro::enforce_min_density() 62 0.005909 0.00619 0.006401 0.18% Gravity::get_new_grav_vector() 11 0.003274 0.003954 0.006306 0.17% Castro::swap_state_time_levels() 10 0.003559 0.004803 0.005 0.14% Amr::coarseTimeStep() 10 0.001373 0.002821 0.004064 0.11% Gravity::get_old_grav_vector() 10 0.00184 0.002109 0.002418 0.07% Castro::finalize_do_advance() 10 0.001741 0.002053 0.002325 0.06% Castro::buildMetrics() 1 0.001654 0.001745 0.001905 0.05% Castro::expand_state() 10 0.001107 0.001357 0.00173 0.05% Amr::timeStep() 10 0.0001597 0.0002212 0.0004441 0.01% Amr::InitAmr() 1 0.0002649 0.0003097 0.0004189 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002689 0.0002897 0.0003165 0.01% Castro::do_old_sources() 10 0.0001375 0.0001636 0.0002051 0.01% Castro::clean_state() 62 0.0001388 0.0001551 0.0001687 0.00% DistributionMapping::LeastUsedCPUs() 1 5.899e-06 0.0001088 0.0001478 0.00% Castro::do_advance_ctu() 10 0.0001018 0.000115 0.0001383 0.00% StateDataPhysBCFunct::() 41 9.368e-05 0.0001025 0.000137 0.00% FabArray::ParallelCopy() 41 6.86e-05 8.057e-05 0.0001238 0.00% Castro::finalize_advance() 10 8.225e-05 0.0001009 0.0001236 0.00% Castro::Castro() 1 6.19e-05 7.708e-05 9.369e-05 0.00% Castro::enforce_consistent_e() 1 7.745e-05 8.52e-05 9.155e-05 0.00% Castro::construct_old_source() 50 6.204e-05 7.107e-05 8.31e-05 0.00% Castro::do_new_sources() 10 5.744e-05 6.637e-05 7.321e-05 0.00% FillPatchSingleLevel 41 6.118e-05 6.858e-05 7.279e-05 0.00% Amr::FinalizeInit() 1 4.311e-06 1.291e-05 6.746e-05 0.00% Castro::construct_new_gravity() 10 4.199e-05 4.684e-05 6.636e-05 0.00% Amr::writeSmallPlotFile() 1 2.961e-05 4.827e-05 6.57e-05 0.00% Castro::subcycle_advance_ctu() 10 3.9e-05 5.101e-05 6.39e-05 0.00% FabArrayBase::getCPC() 41 4.324e-05 5.186e-05 6.027e-05 0.00% Castro::apply_source_to_state() 20 3.835e-05 4.695e-05 5.931e-05 0.00% Castro::construct_old_gravity() 10 3.69e-05 4.454e-05 5.859e-05 0.00% Castro::advance() 10 3.539e-05 4.112e-05 4.635e-05 0.00% FabArrayBase::CPC::define() 2 2.151e-05 2.533e-05 4.06e-05 0.00% Castro::check_for_nan() 20 2.164e-05 2.505e-05 3.319e-05 0.00% Castro::enforce_speed_limit() 62 2.673e-05 2.849e-05 3.279e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.141e-05 2.525e-05 3.227e-05 0.00% Gravity::swapTimeLevels() 10 1.117e-05 1.598e-05 2.298e-05 0.00% Amr::defBaseLevel() 1 1.253e-05 1.575e-05 1.988e-05 0.00% Castro::post_timestep() 10 1.277e-05 1.486e-05 1.672e-05 0.00% Castro::create_source_corrector() 10 7.609e-06 9.252e-06 1.495e-05 0.00% Gravity::set_mass_offset() 10 9.317e-06 1.063e-05 1.432e-05 0.00% Castro::computeNewDt() 9 9.088e-06 1.069e-05 1.235e-05 0.00% Castro::post_init() 1 3.07e-06 4.858e-06 1.194e-05 0.00% Castro::FluxRegCrseInit 10 7.181e-06 9.095e-06 1.132e-05 0.00% Amr::initSubcycle() 1 8.866e-06 9.674e-06 1.046e-05 0.00% Castro::retry_advance_ctu() 10 6.843e-06 7.329e-06 8.046e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.804e-06 4.781e-06 6e-06 0.00% Castro::computeInitialDt() 2 4.259e-06 4.774e-06 5.328e-06 0.00% Amr::InitializeInit() 1 1.84e-06 2.487e-06 4.924e-06 0.00% Castro::post_regrid() 1 1.727e-06 3.382e-06 4.1e-06 0.00% Castro::FluxRegFineAdd() 10 1.955e-06 2.323e-06 2.951e-06 0.00% Amr::init() 1 1.736e-06 2.13e-06 2.556e-06 0.00% Amr::initialInit() 1 1.284e-06 1.697e-06 2.039e-06 0.00% DistributionMapping::Distribute() 1 9.45e-07 1.037e-06 1.168e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.631 3.632 3.633 100.00% Amr::coarseTimeStep() 10 3.394 3.394 3.394 93.42% Amr::timeStep() 10 3.38 3.381 3.383 93.11% Castro::advance() 10 3.364 3.365 3.366 92.65% Castro::subcycle_advance_ctu() 10 3.274 3.283 3.29 90.55% Castro::do_advance_ctu() 10 3.274 3.283 3.29 90.55% Castro::construct_ctu_hydro_source() 10 2.496 2.5 2.504 68.92% Gravity::make_radial_gravity() 21 0.3286 0.342 0.3473 9.56% Gravity::get_new_grav_vector() 11 0.2244 0.227 0.2292 6.31% check_for_negative_density() 10 0.02897 0.1138 0.2253 6.20% Castro::construct_old_gravity() 10 0.1914 0.1995 0.2058 5.67% Gravity::get_old_grav_vector() 10 0.1907 0.1988 0.2051 5.65% Castro::construct_new_gravity() 10 0.2 0.2022 0.2035 5.60% FillPatchIterator::Initialize 41 0.1591 0.1752 0.1898 5.22% Amr::init() 1 0.1881 0.1883 0.1883 5.18% Castro::initialize_do_advance() 10 0.1627 0.1778 0.1879 5.17% Amr::initialInit() 1 0.1716 0.1718 0.172 4.74% Amr::InitializeInit() 1 0.06107 0.1012 0.143 3.94% Amr::defBaseLevel() 1 0.06107 0.1012 0.143 3.94% FillPatchSingleLevel 41 0.1191 0.1295 0.141 3.88% Castro::expand_state() 10 0.1069 0.1212 0.1333 3.67% Castro::initData() 1 0.04245 0.08316 0.1238 3.41% Castro::estTimeStep() 21 0.02265 0.07337 0.1228 3.38% Castro::clean_state() 62 0.1142 0.1174 0.1206 3.32% Amr::FinalizeInit() 1 0.02858 0.07065 0.1106 3.04% FabArray::ParallelCopy() 41 0.08212 0.09147 0.1002 2.76% Castro::do_old_sources() 10 0.09115 0.09479 0.09965 2.74% FabArray::setVal() 143 0.06693 0.07687 0.08973 2.47% Castro::initialize_advance() 10 0.07207 0.07879 0.08757 2.41% amrex::Copy() 193 0.0756 0.0798 0.08472 2.33% Castro::computeInitialDt() 2 0.002077 0.04399 0.08413 2.32% Castro::do_new_sources() 10 0.06055 0.06935 0.07878 2.17% Castro::computeTemp() 63 0.06681 0.07012 0.07281 2.00% Amr::writePlotFile() 2 0.05951 0.0598 0.06001 1.65% FabArray::ParallelCopy_finish() 41 0.03944 0.04848 0.0563 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04798 0.05039 0.05238 1.44% Castro::reset_internal_energy(Fab) 1008 0.04771 0.0501 0.05207 1.43% FabArray::ParallelCopy_nowait() 41 0.04084 0.0429 0.04411 1.21% StateDataPhysBCFunct::() 41 0.03411 0.03798 0.04271 1.18% StateData::FillBoundary(geom) 41 0.03401 0.03787 0.04261 1.17% Castro::normalize_species() 62 0.04151 0.04184 0.04253 1.17% Castro::construct_new_source() 50 0.02922 0.03275 0.03689 1.02% Castro::finalize_do_advance() 10 0.01334 0.02294 0.03225 0.89% Castro::construct_new_gravity_source() 10 0.02289 0.02632 0.03027 0.83% Gravity::interpolate_monopole_grav() 21 0.0285 0.02863 0.02882 0.79% Castro::post_init() 1 0.02593 0.0261 0.02629 0.72% Castro::post_timestep() 10 0.01551 0.01601 0.01656 0.46% VisMF::Write(FabArray) 2 0.01323 0.01382 0.01655 0.46% Castro::apply_source_to_state() 20 0.01225 0.01364 0.01429 0.39% FabArray::Saxpy() 20 0.01221 0.0136 0.01424 0.39% FabArray::setDomainBndry() 41 0.009362 0.01164 0.01324 0.36% Castro::Castro() 1 0.01114 0.01168 0.01259 0.35% Castro::check_for_nan() 20 0.009813 0.01095 0.01211 0.33% MultiFab::contains_nan() 20 0.009787 0.01092 0.01209 0.33% Castro::construct_old_source() 50 0.01027 0.01066 0.01102 0.30% Castro::construct_old_gravity_source() 10 0.01021 0.01059 0.01094 0.30% Castro::initMFs() 1 0.007035 0.007538 0.008566 0.24% Castro::computeNewDt() 9 0.008498 0.008508 0.00852 0.23% AmrLevel::AmrLevel(dm) 1 0.005955 0.006213 0.006648 0.18% StateData::define() 4 0.00593 0.006188 0.006616 0.18% Castro::enforce_min_density() 62 0.005909 0.00619 0.006401 0.18% Castro::swap_state_time_levels() 10 0.003559 0.004803 0.005 0.14% Castro::finalize_advance() 10 0.002937 0.003549 0.004563 0.13% Castro::buildMetrics() 1 0.001774 0.001877 0.002059 0.06% Castro::post_regrid() 1 0.001594 0.001647 0.001696 0.05% Amr::InitAmr() 1 0.000274 0.0003194 0.0004278 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.067e-05 0.0001147 0.0001549 0.00% DistributionMapping::LeastUsedCPUs() 1 5.899e-06 0.0001088 0.0001478 0.00% FabArrayBase::getCPC() 41 6.867e-05 7.719e-05 9.903e-05 0.00% Castro::enforce_consistent_e() 1 7.745e-05 8.52e-05 9.155e-05 0.00% Amr::writeSmallPlotFile() 1 2.961e-05 4.827e-05 6.57e-05 0.00% FabArrayBase::CPC::define() 2 2.151e-05 2.533e-05 4.06e-05 0.00% Castro::enforce_speed_limit() 62 2.673e-05 2.849e-05 3.279e-05 0.00% Gravity::swapTimeLevels() 10 1.117e-05 1.598e-05 2.298e-05 0.00% Castro::create_source_corrector() 10 7.609e-06 9.252e-06 1.495e-05 0.00% Gravity::set_mass_offset() 10 9.317e-06 1.063e-05 1.432e-05 0.00% Castro::FluxRegCrseInit 10 7.181e-06 9.095e-06 1.132e-05 0.00% Amr::initSubcycle() 1 8.866e-06 9.674e-06 1.046e-05 0.00% Castro::retry_advance_ctu() 10 6.843e-06 7.329e-06 8.046e-06 0.00% Castro::FluxRegFineAdd() 10 1.955e-06 2.323e-06 2.951e-06 0.00% DistributionMapping::Distribute() 1 9.45e-07 1.037e-06 1.168e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-31-g9c256b12b89f) finalized