MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-4-g9fc635426cae) initialized Starting run at 17:18:47 UTC on 2023-07-03. Successfully read inputs file ... Castro git describe: 23.07 AMReX git describe: 23.07-4-g9fc635426 Microphysics git describe: 23.07-10-g139855b1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016468158 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368684243 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338282586 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.370362448 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329172138 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362984709 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336917948 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311747842 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311316282 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313770593 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313848744 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010319899 seconds Ending run at 17:18:51 UTC on 2023-07-03. Run time = 3.577497901 Run time without initialization = 3.374975354 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.577 ... 3.577 ... 3.578 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3149 2.3685 2.4413 68.24% Gravity::make_radial_gravity() 21 0.3139 0.326 0.3392 9.48% check_for_negative_density() 10 0.01863 0.0954 0.1485 4.15% Castro::estTimeStep() 21 0.02074 0.08373 0.1323 3.70% Castro::initData() 1 0.03853 0.07921 0.1306 3.65% amrex::Copy() 193 0.06353 0.07662 0.08499 2.38% FabArray::setVal() 143 0.064 0.07151 0.08117 2.27% FabArray::ParallelCopy_finish() 41 0.03597 0.05182 0.07636 2.13% Castro::reset_internal_energy(Fab) 1008 0.04709 0.04951 0.05187 1.45% FabArray::ParallelCopy_nowait() 41 0.03601 0.04069 0.0426 1.19% Castro::normalize_species() 62 0.041 0.0415 0.04244 1.19% StateData::FillBoundary(geom) 41 0.03364 0.03669 0.03836 1.07% FillPatchIterator::Initialize 41 0.02957 0.03344 0.03572 1.00% Gravity::interpolate_monopole_grav() 21 0.02813 0.02849 0.02879 0.80% Castro::construct_new_gravity_source() 10 0.02268 0.02515 0.02871 0.80% Castro::initialize_do_advance() 10 0.01278 0.01774 0.02185 0.61% Castro::computeTemp() 63 0.01714 0.01938 0.02053 0.57% VisMF::Write(FabArray) 2 0.0137 0.01454 0.01751 0.49% Castro::initialize_advance() 10 0.008763 0.01164 0.01511 0.42% FabArray::Saxpy() 20 0.01086 0.01263 0.01326 0.37% FabArray::setDomainBndry() 41 0.008803 0.01101 0.0124 0.35% MultiFab::contains_nan() 20 0.01045 0.01138 0.01234 0.34% Amr::writePlotFile() 2 0.006769 0.009976 0.01085 0.30% Castro::construct_old_gravity_source() 10 0.006977 0.009438 0.00995 0.28% Castro::initMFs() 1 0.007095 0.00746 0.009329 0.26% main() 1 0.005766 0.006449 0.006811 0.19% StateData::define() 4 0.005881 0.006028 0.006776 0.19% Castro::construct_new_source() 50 0.005603 0.006176 0.006432 0.18% Castro::enforce_min_density() 62 0.005621 0.006061 0.006303 0.18% Gravity::get_new_grav_vector() 11 0.003112 0.003885 0.006245 0.17% Castro::swap_state_time_levels() 10 0.003404 0.004681 0.005526 0.15% Amr::coarseTimeStep() 10 0.00139 0.001826 0.002418 0.07% Gravity::get_old_grav_vector() 10 0.001626 0.001961 0.002371 0.07% Castro::buildMetrics() 1 0.001643 0.001693 0.001937 0.05% Castro::finalize_do_advance() 10 0.0006783 0.00149 0.001784 0.05% Castro::expand_state() 10 0.0006484 0.0009905 0.001127 0.03% Amr::timeStep() 10 0.0001764 0.0002376 0.0004607 0.01% Amr::InitAmr() 1 0.0002834 0.0003024 0.0004131 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002726 0.0002955 0.0003351 0.01% Castro::do_old_sources() 10 0.0001483 0.0001621 0.0001857 0.01% Castro::clean_state() 62 0.0001358 0.0001458 0.0001672 0.00% Castro::do_advance_ctu() 10 9.96e-05 0.000115 0.000138 0.00% Castro::finalize_advance() 10 8.154e-05 0.0001021 0.0001334 0.00% DistributionMapping::LeastUsedCPUs() 1 6.496e-06 0.0001148 0.0001334 0.00% StateDataPhysBCFunct::() 41 8.184e-05 9.309e-05 0.0001014 0.00% Castro::enforce_consistent_e() 1 7.537e-05 8.582e-05 9.667e-05 0.00% Castro::Castro() 1 6.232e-05 7.923e-05 9.069e-05 0.00% FabArray::ParallelCopy() 41 6.612e-05 7.241e-05 8.641e-05 0.00% Castro::do_new_sources() 10 5.744e-05 6.452e-05 7.837e-05 0.00% FillPatchSingleLevel 41 6.279e-05 6.797e-05 7.743e-05 0.00% Castro::construct_old_source() 50 5.475e-05 6.683e-05 7.69e-05 0.00% Amr::writeSmallPlotFile() 1 2.646e-05 4.347e-05 6.593e-05 0.00% Amr::FinalizeInit() 1 3.923e-06 1.262e-05 6.426e-05 0.00% Castro::subcycle_advance_ctu() 10 4.058e-05 4.855e-05 6.049e-05 0.00% Castro::construct_new_gravity() 10 3.91e-05 4.666e-05 5.498e-05 0.00% Castro::construct_old_gravity() 10 3.592e-05 4.472e-05 5.265e-05 0.00% FabArrayBase::getCPC() 41 4.385e-05 4.816e-05 5.136e-05 0.00% Castro::apply_source_to_state() 20 3.745e-05 4.367e-05 4.853e-05 0.00% Castro::advance() 10 3.514e-05 4.032e-05 4.477e-05 0.00% Castro::enforce_speed_limit() 62 2.339e-05 2.917e-05 3.799e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.772e-05 2.702e-05 3.371e-05 0.00% Castro::check_for_nan() 20 2.021e-05 2.342e-05 2.959e-05 0.00% FabArrayBase::CPC::define() 2 2.216e-05 2.525e-05 2.945e-05 0.00% Amr::defBaseLevel() 1 1.179e-05 1.698e-05 2.644e-05 0.00% Castro::post_timestep() 10 1.324e-05 1.472e-05 1.706e-05 0.00% Gravity::swapTimeLevels() 10 1.117e-05 1.313e-05 1.471e-05 0.00% Gravity::set_mass_offset() 10 9.465e-06 1.119e-05 1.299e-05 0.00% Castro::computeNewDt() 9 7.53e-06 9.135e-06 1.127e-05 0.00% Castro::FluxRegCrseInit 10 7.375e-06 9.338e-06 1.043e-05 0.00% Castro::create_source_corrector() 10 7.28e-06 8.777e-06 1.005e-05 0.00% Amr::initSubcycle() 1 8.462e-06 8.829e-06 9.881e-06 0.00% Amr::init() 1 1.807e-06 3.052e-06 8.176e-06 0.00% Castro::retry_advance_ctu() 10 6.832e-06 7.2e-06 7.847e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.652e-06 5.393e-06 6.957e-06 0.00% Castro::post_init() 1 2.983e-06 4.048e-06 5.297e-06 0.00% Castro::computeInitialDt() 2 3.972e-06 4.64e-06 5.175e-06 0.00% Amr::InitializeInit() 1 1.741e-06 2.421e-06 4.568e-06 0.00% Castro::post_regrid() 1 1.964e-06 3.309e-06 4.307e-06 0.00% Amr::initialInit() 1 1.187e-06 1.987e-06 2.774e-06 0.00% Castro::FluxRegFineAdd() 10 1.752e-06 2.058e-06 2.335e-06 0.00% DistributionMapping::Distribute() 1 8.42e-07 1.159e-06 1.471e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.577 3.577 3.578 100.00% Amr::coarseTimeStep() 10 3.358 3.358 3.358 93.86% Amr::timeStep() 10 3.346 3.347 3.347 93.55% Castro::advance() 10 3.33 3.33 3.331 93.11% Castro::subcycle_advance_ctu() 10 3.245 3.253 3.26 91.12% Castro::do_advance_ctu() 10 3.245 3.253 3.26 91.12% Castro::construct_ctu_hydro_source() 10 2.483 2.485 2.49 69.60% Gravity::make_radial_gravity() 21 0.3298 0.3422 0.3524 9.85% Gravity::get_new_grav_vector() 11 0.2241 0.2266 0.2283 6.38% Castro::construct_old_gravity() 10 0.1917 0.1983 0.206 5.76% Gravity::get_old_grav_vector() 10 0.1911 0.1978 0.2054 5.74% Amr::init() 1 0.202 0.2021 0.2021 5.65% Castro::construct_new_gravity() 10 0.1979 0.1994 0.2005 5.60% FillPatchIterator::Initialize 41 0.1545 0.174 0.1874 5.24% Amr::initialInit() 1 0.185 0.1853 0.1857 5.19% Castro::initialize_do_advance() 10 0.1635 0.1738 0.1817 5.08% Amr::InitializeInit() 1 0.0602 0.1013 0.1542 4.31% Amr::defBaseLevel() 1 0.0602 0.1013 0.1542 4.31% FillPatchSingleLevel 41 0.1147 0.1295 0.1491 4.17% check_for_negative_density() 10 0.01863 0.0954 0.1485 4.15% Castro::initData() 1 0.04249 0.08324 0.1346 3.76% Castro::estTimeStep() 21 0.02074 0.08373 0.1323 3.70% Castro::expand_state() 10 0.1061 0.1191 0.128 3.58% Amr::FinalizeInit() 1 0.03144 0.08402 0.125 3.49% Castro::clean_state() 62 0.1114 0.116 0.1203 3.36% FabArray::ParallelCopy() 41 0.0773 0.09266 0.1125 3.15% Castro::computeInitialDt() 2 0.002349 0.05529 0.0964 2.69% Castro::do_old_sources() 10 0.08668 0.0922 0.09538 2.67% amrex::Copy() 193 0.06353 0.07662 0.08499 2.38% Castro::initialize_advance() 10 0.06722 0.0737 0.08234 2.30% FabArray::setVal() 143 0.064 0.07151 0.08117 2.27% FabArray::ParallelCopy_finish() 41 0.03597 0.05182 0.07636 2.13% Castro::do_new_sources() 10 0.05922 0.06646 0.07599 2.12% Castro::computeTemp() 63 0.06452 0.06919 0.07272 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04738 0.0498 0.05218 1.46% Castro::reset_internal_energy(Fab) 1008 0.04709 0.04951 0.05187 1.45% FabArray::ParallelCopy_nowait() 41 0.03609 0.04077 0.04267 1.19% Castro::normalize_species() 62 0.041 0.0415 0.04244 1.19% StateDataPhysBCFunct::() 41 0.03374 0.03678 0.03844 1.07% StateData::FillBoundary(geom) 41 0.03364 0.03669 0.03836 1.07% Castro::construct_new_source() 50 0.02874 0.03132 0.03512 0.98% Castro::finalize_do_advance() 10 0.01166 0.02159 0.02917 0.82% Gravity::interpolate_monopole_grav() 21 0.02813 0.02849 0.02879 0.80% Castro::construct_new_gravity_source() 10 0.02268 0.02515 0.02871 0.80% Castro::post_init() 1 0.02802 0.0283 0.02847 0.80% Amr::writePlotFile() 2 0.02682 0.02718 0.0275 0.77% VisMF::Write(FabArray) 2 0.0137 0.01454 0.01751 0.49% Castro::post_timestep() 10 0.01552 0.01584 0.01617 0.45% Castro::apply_source_to_state() 20 0.0109 0.01268 0.01331 0.37% FabArray::Saxpy() 20 0.01086 0.01263 0.01326 0.37% Castro::Castro() 1 0.01162 0.01187 0.01274 0.36% FabArray::setDomainBndry() 41 0.008803 0.01101 0.0124 0.35% Castro::check_for_nan() 20 0.01048 0.0114 0.01236 0.35% MultiFab::contains_nan() 20 0.01045 0.01138 0.01234 0.34% Castro::construct_old_source() 50 0.007032 0.009505 0.01002 0.28% Castro::construct_old_gravity_source() 10 0.006977 0.009438 0.00995 0.28% Castro::initMFs() 1 0.007095 0.00746 0.009329 0.26% Castro::computeNewDt() 9 0.008341 0.008345 0.008351 0.23% AmrLevel::AmrLevel(dm) 1 0.005899 0.006055 0.006798 0.19% StateData::define() 4 0.005881 0.006028 0.006776 0.19% Castro::enforce_min_density() 62 0.005621 0.006061 0.006303 0.18% Castro::swap_state_time_levels() 10 0.003404 0.004681 0.005526 0.15% Castro::finalize_advance() 10 0.003007 0.003499 0.004003 0.11% Castro::buildMetrics() 1 0.001762 0.001823 0.002097 0.06% Castro::post_regrid() 1 0.001571 0.00163 0.001862 0.05% Amr::InitAmr() 1 0.0002919 0.0003113 0.0004217 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.099e-05 0.0001214 0.000141 0.00% DistributionMapping::LeastUsedCPUs() 1 6.496e-06 0.0001148 0.0001334 0.00% Castro::enforce_consistent_e() 1 7.537e-05 8.582e-05 9.667e-05 0.00% FabArrayBase::getCPC() 41 6.601e-05 7.341e-05 7.712e-05 0.00% Amr::writeSmallPlotFile() 1 2.646e-05 4.347e-05 6.593e-05 0.00% Castro::enforce_speed_limit() 62 2.339e-05 2.917e-05 3.799e-05 0.00% FabArrayBase::CPC::define() 2 2.216e-05 2.525e-05 2.945e-05 0.00% Gravity::swapTimeLevels() 10 1.117e-05 1.313e-05 1.471e-05 0.00% Gravity::set_mass_offset() 10 9.465e-06 1.119e-05 1.299e-05 0.00% Castro::FluxRegCrseInit 10 7.375e-06 9.338e-06 1.043e-05 0.00% Castro::create_source_corrector() 10 7.28e-06 8.777e-06 1.005e-05 0.00% Amr::initSubcycle() 1 8.462e-06 8.829e-06 9.881e-06 0.00% Castro::retry_advance_ctu() 10 6.832e-06 7.2e-06 7.847e-06 0.00% Castro::FluxRegFineAdd() 10 1.752e-06 2.058e-06 2.335e-06 0.00% DistributionMapping::Distribute() 1 8.42e-07 1.159e-06 1.471e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-4-g9fc635426cae) finalized