MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-4-g9fc635426cae) initialized Starting run at 05:35:43 UTC on 2023-07-03. Successfully read inputs file ... Castro git describe: 23.07 AMReX git describe: 23.07-4-g9fc635426 Microphysics git describe: 23.07-6-gcd2e4d02 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016440561 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369322942 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342745091 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.375569977 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333331964 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367523359 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345268748 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318439657 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313211217 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313693257 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31339487 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010216921 seconds Ending run at 05:35:47 UTC on 2023-07-03. Run time = 3.592741521 Run time without initialization = 3.410083252 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.592 ... 3.592 ... 3.593 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3042 2.3703 2.4181 67.30% Gravity::make_radial_gravity() 21 0.328 0.3367 0.3509 9.77% check_for_negative_density() 10 0.04785 0.09844 0.1654 4.60% Castro::estTimeStep() 21 0.02288 0.06889 0.1144 3.19% Castro::initData() 1 0.04019 0.0778 0.1131 3.15% FabArray::setVal() 143 0.06171 0.07184 0.08785 2.45% amrex::Copy() 193 0.06514 0.0776 0.08766 2.44% FabArray::ParallelCopy_finish() 41 0.03542 0.05862 0.08696 2.42% Castro::reset_internal_energy(Fab) 1008 0.04825 0.04998 0.05299 1.47% FabArray::ParallelCopy_nowait() 41 0.03597 0.04171 0.04367 1.22% Castro::normalize_species() 62 0.04134 0.0419 0.04262 1.19% StateData::FillBoundary(geom) 41 0.03532 0.03741 0.03915 1.09% FillPatchIterator::Initialize 41 0.02893 0.03466 0.03729 1.04% Castro::construct_new_gravity_source() 10 0.0227 0.0255 0.02966 0.83% Gravity::interpolate_monopole_grav() 21 0.0281 0.02849 0.02911 0.81% Castro::initialize_do_advance() 10 0.01184 0.0184 0.02236 0.62% Castro::computeTemp() 63 0.01918 0.01993 0.021 0.58% VisMF::Write(FabArray) 2 0.01332 0.01416 0.01716 0.48% Castro::initialize_advance() 10 0.008813 0.01143 0.01482 0.41% FabArray::Saxpy() 20 0.01039 0.01264 0.01335 0.37% FabArray::setDomainBndry() 41 0.00872 0.01171 0.01291 0.36% MultiFab::contains_nan() 20 0.01079 0.01161 0.01258 0.35% Amr::writePlotFile() 2 0.00692 0.01001 0.01141 0.32% Castro::construct_old_gravity_source() 10 0.006897 0.00961 0.01024 0.28% Castro::initMFs() 1 0.007 0.007472 0.008909 0.25% StateData::define() 4 0.005939 0.006194 0.006823 0.19% main() 1 0.005386 0.006158 0.006686 0.19% Castro::enforce_min_density() 62 0.005586 0.006052 0.006341 0.18% Castro::construct_new_source() 50 0.005679 0.006148 0.006299 0.18% Gravity::get_new_grav_vector() 11 0.002927 0.004221 0.006072 0.17% Castro::swap_state_time_levels() 10 0.003406 0.004587 0.005543 0.15% Amr::coarseTimeStep() 10 0.001951 0.00321 0.003872 0.11% Gravity::get_old_grav_vector() 10 0.001586 0.002064 0.00243 0.07% Castro::finalize_do_advance() 10 0.0006906 0.001661 0.002063 0.06% Castro::buildMetrics() 1 0.001675 0.001753 0.00194 0.05% Castro::expand_state() 10 0.000673 0.0008273 0.0009129 0.03% Amr::timeStep() 10 0.0001563 0.000228 0.0004766 0.01% Amr::InitAmr() 1 0.0002745 0.0003086 0.0004194 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002888 0.0003002 0.0003143 0.01% Castro::clean_state() 62 0.0001324 0.00017 0.0002133 0.01% Castro::do_old_sources() 10 0.0001363 0.0001575 0.000166 0.00% DistributionMapping::LeastUsedCPUs() 1 7.082e-06 0.0001151 0.0001441 0.00% Castro::do_advance_ctu() 10 0.0001012 0.000116 0.0001272 0.00% StateDataPhysBCFunct::() 41 8.313e-05 0.0001005 0.0001221 0.00% Castro::finalize_advance() 10 8.23e-05 0.0001013 0.000118 0.00% Amr::writeSmallPlotFile() 1 3.606e-05 6.188e-05 0.0001071 0.00% Castro::Castro() 1 5.732e-05 6.79e-05 0.0001022 0.00% Castro::enforce_consistent_e() 1 7.583e-05 8.832e-05 0.0001 0.00% Castro::construct_old_source() 50 4.9e-05 6.484e-05 8.131e-05 0.00% FabArray::ParallelCopy() 41 6.352e-05 7.261e-05 7.939e-05 0.00% FillPatchSingleLevel 41 6.473e-05 6.877e-05 7.535e-05 0.00% Castro::do_new_sources() 10 5.443e-05 6.243e-05 7.262e-05 0.00% Amr::FinalizeInit() 1 4.164e-06 1.21e-05 6.377e-05 0.00% FabArrayBase::getCPC() 41 4.301e-05 4.928e-05 5.686e-05 0.00% Castro::subcycle_advance_ctu() 10 3.488e-05 4.721e-05 5.526e-05 0.00% Castro::construct_new_gravity() 10 3.783e-05 4.521e-05 5.517e-05 0.00% Castro::construct_old_gravity() 10 3.685e-05 4.218e-05 4.875e-05 0.00% Castro::advance() 10 3.764e-05 4.182e-05 4.874e-05 0.00% Castro::apply_source_to_state() 20 3.517e-05 4.145e-05 4.659e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.444e-05 3.157e-05 0.00% Castro::enforce_speed_limit() 62 2.525e-05 2.828e-05 3.059e-05 0.00% Amr::defBaseLevel() 1 1.199e-05 1.898e-05 2.969e-05 0.00% Castro::check_for_nan() 20 2.071e-05 2.448e-05 2.922e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.685e-05 2.116e-05 2.528e-05 0.00% Castro::post_timestep() 10 1.343e-05 1.449e-05 1.587e-05 0.00% Gravity::swapTimeLevels() 10 9.423e-06 1.302e-05 1.563e-05 0.00% Castro::computeNewDt() 9 7.994e-06 1.093e-05 1.438e-05 0.00% Gravity::set_mass_offset() 10 8.209e-06 1.028e-05 1.29e-05 0.00% Castro::FluxRegCrseInit 10 6.564e-06 9.272e-06 1.253e-05 0.00% Amr::initSubcycle() 1 8.416e-06 9.059e-06 9.871e-06 0.00% Castro::create_source_corrector() 10 8.228e-06 8.524e-06 9.283e-06 0.00% Castro::retry_advance_ctu() 10 6.621e-06 7.442e-06 8.074e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.767e-06 5.797e-06 7.592e-06 0.00% Castro::computeInitialDt() 2 3.452e-06 4.481e-06 5.616e-06 0.00% Castro::post_init() 1 2.908e-06 3.69e-06 5.396e-06 0.00% Amr::InitializeInit() 1 1.686e-06 2.331e-06 4.379e-06 0.00% Castro::post_regrid() 1 2.181e-06 3.039e-06 3.807e-06 0.00% Castro::FluxRegFineAdd() 10 1.952e-06 2.196e-06 2.815e-06 0.00% Amr::init() 1 1.584e-06 2.222e-06 2.767e-06 0.00% Amr::initialInit() 1 1.468e-06 1.829e-06 2.03e-06 0.00% DistributionMapping::Distribute() 1 8.58e-07 1.066e-06 1.29e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.592 3.592 3.593 100.00% Amr::coarseTimeStep() 10 3.393 3.393 3.393 94.45% Amr::timeStep() 10 3.379 3.38 3.381 94.11% Castro::advance() 10 3.363 3.364 3.365 93.65% Castro::subcycle_advance_ctu() 10 3.273 3.286 3.293 91.66% Castro::do_advance_ctu() 10 3.273 3.286 3.293 91.66% Castro::construct_ctu_hydro_source() 10 2.489 2.491 2.493 69.40% Gravity::make_radial_gravity() 21 0.3452 0.3531 0.3645 10.15% Gravity::get_new_grav_vector() 11 0.2339 0.2371 0.2387 6.64% Castro::construct_new_gravity() 10 0.2076 0.2099 0.2114 5.88% Castro::construct_old_gravity() 10 0.1946 0.2 0.2078 5.78% Gravity::get_old_grav_vector() 10 0.194 0.1994 0.2072 5.77% FillPatchIterator::Initialize 41 0.1635 0.1844 0.1987 5.53% Castro::initialize_do_advance() 10 0.1715 0.1817 0.1914 5.33% Amr::init() 1 0.1821 0.1822 0.1822 5.07% Amr::initialInit() 1 0.1654 0.1656 0.1661 4.62% check_for_negative_density() 10 0.04785 0.09844 0.1654 4.60% FillPatchSingleLevel 41 0.1154 0.1381 0.161 4.48% Castro::expand_state() 10 0.1115 0.1261 0.1359 3.78% Amr::InitializeInit() 1 0.06155 0.0998 0.1347 3.75% Amr::defBaseLevel() 1 0.06155 0.09979 0.1347 3.75% FabArray::ParallelCopy() 41 0.0776 0.1005 0.1231 3.43% Castro::clean_state() 62 0.1148 0.1174 0.1219 3.39% Castro::initData() 1 0.04417 0.08182 0.1173 3.26% Castro::estTimeStep() 21 0.02288 0.06889 0.1144 3.19% Amr::FinalizeInit() 1 0.03069 0.06583 0.1039 2.89% Castro::do_old_sources() 10 0.0924 0.09552 0.09836 2.74% FabArray::setVal() 143 0.06171 0.07184 0.08785 2.45% amrex::Copy() 193 0.06514 0.0776 0.08766 2.44% FabArray::ParallelCopy_finish() 41 0.03542 0.05862 0.08696 2.42% Castro::initialize_advance() 10 0.067 0.07422 0.08684 2.42% Castro::do_new_sources() 10 0.05976 0.06691 0.07766 2.16% Castro::computeInitialDt() 2 0.002169 0.03709 0.07522 2.09% Castro::computeTemp() 63 0.06837 0.07021 0.07431 2.07% Castro::reset_internal_energy(MultiFab) 63 0.04854 0.05028 0.05331 1.48% Castro::reset_internal_energy(Fab) 1008 0.04825 0.04998 0.05299 1.47% FabArray::ParallelCopy_nowait() 41 0.03604 0.04179 0.04373 1.22% Castro::normalize_species() 62 0.04134 0.0419 0.04262 1.19% StateDataPhysBCFunct::() 41 0.0354 0.03751 0.03924 1.09% StateData::FillBoundary(geom) 41 0.03532 0.03741 0.03915 1.09% Castro::construct_new_source() 50 0.0289 0.03165 0.03592 1.00% Castro::finalize_do_advance() 10 0.01387 0.02465 0.03244 0.90% Castro::construct_new_gravity_source() 10 0.0227 0.0255 0.02966 0.83% Gravity::interpolate_monopole_grav() 21 0.0281 0.02849 0.02911 0.81% Castro::post_init() 1 0.02813 0.02831 0.02853 0.79% Amr::writePlotFile() 2 0.02645 0.02686 0.02709 0.75% VisMF::Write(FabArray) 2 0.01332 0.01416 0.01716 0.48% Castro::post_timestep() 10 0.01579 0.01619 0.01667 0.46% Castro::apply_source_to_state() 20 0.01042 0.01268 0.0134 0.37% FabArray::Saxpy() 20 0.01039 0.01264 0.01335 0.37% FabArray::setDomainBndry() 41 0.00872 0.01171 0.01291 0.36% Castro::check_for_nan() 20 0.01082 0.01163 0.0126 0.35% MultiFab::contains_nan() 20 0.01079 0.01161 0.01258 0.35% Castro::Castro() 1 0.01132 0.01161 0.01249 0.35% Castro::construct_old_source() 50 0.006946 0.009675 0.01031 0.29% Castro::construct_old_gravity_source() 10 0.006897 0.00961 0.01024 0.28% Castro::initMFs() 1 0.007 0.007472 0.008909 0.25% Castro::computeNewDt() 9 0.008774 0.00883 0.00885 0.25% AmrLevel::AmrLevel(dm) 1 0.005964 0.006215 0.006848 0.19% StateData::define() 4 0.005939 0.006194 0.006823 0.19% Castro::enforce_min_density() 62 0.005586 0.006052 0.006341 0.18% Castro::swap_state_time_levels() 10 0.003406 0.004587 0.005543 0.15% Castro::finalize_advance() 10 0.002958 0.003559 0.004483 0.12% Castro::buildMetrics() 1 0.001797 0.001886 0.002103 0.06% Castro::post_regrid() 1 0.001525 0.001634 0.001897 0.05% Amr::InitAmr() 1 0.0002829 0.0003177 0.0004279 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.171e-05 0.000122 0.0001527 0.00% DistributionMapping::LeastUsedCPUs() 1 7.082e-06 0.0001151 0.0001441 0.00% Amr::writeSmallPlotFile() 1 3.606e-05 6.188e-05 0.0001071 0.00% Castro::enforce_consistent_e() 1 7.583e-05 8.832e-05 0.0001 0.00% FabArrayBase::getCPC() 41 6.635e-05 7.372e-05 8.209e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.444e-05 3.157e-05 0.00% Castro::enforce_speed_limit() 62 2.525e-05 2.828e-05 3.059e-05 0.00% Gravity::swapTimeLevels() 10 9.423e-06 1.302e-05 1.563e-05 0.00% Gravity::set_mass_offset() 10 8.209e-06 1.028e-05 1.29e-05 0.00% Castro::FluxRegCrseInit 10 6.564e-06 9.272e-06 1.253e-05 0.00% Amr::initSubcycle() 1 8.416e-06 9.059e-06 9.871e-06 0.00% Castro::create_source_corrector() 10 8.228e-06 8.524e-06 9.283e-06 0.00% Castro::retry_advance_ctu() 10 6.621e-06 7.442e-06 8.074e-06 0.00% Castro::FluxRegFineAdd() 10 1.952e-06 2.196e-06 2.815e-06 0.00% DistributionMapping::Distribute() 1 8.58e-07 1.066e-06 1.29e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-4-g9fc635426cae) finalized