MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-6-g2589f265eeb4) initialized Starting run at 05:23:43 UTC on 2023-07-04. Successfully read inputs file ... Castro git describe: 23.07 AMReX git describe: 23.07-6-g2589f265e Microphysics git describe: 23.07-7-g2059cd81 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016572359 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369230936 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354620402 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334834683 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336993156 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358381115 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349088648 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315880586 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314242511 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313772125 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315567249 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010471576 seconds Ending run at 05:23:47 UTC on 2023-07-04. Run time = 3.572126124 Run time without initialization = 3.380547262 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.57 ... 3.571 ... 3.572 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2549 2.3642 2.4142 67.58% Gravity::make_radial_gravity() 21 0.3209 0.3306 0.347 9.72% check_for_negative_density() 10 0.02602 0.07863 0.1904 5.33% Castro::estTimeStep() 21 0.02362 0.07831 0.128 3.58% Castro::initData() 1 0.03851 0.07796 0.1196 3.35% FabArray::setVal() 143 0.06541 0.07515 0.08968 2.51% amrex::Copy() 193 0.06557 0.07751 0.0882 2.47% FabArray::ParallelCopy_finish() 41 0.03547 0.05897 0.08609 2.41% Castro::reset_internal_energy(Fab) 1008 0.0476 0.04939 0.05085 1.42% Castro::normalize_species() 62 0.04092 0.04228 0.04475 1.25% FabArray::ParallelCopy_nowait() 41 0.03492 0.0411 0.04315 1.21% StateData::FillBoundary(geom) 41 0.03399 0.03758 0.04284 1.20% FillPatchIterator::Initialize 41 0.02961 0.03405 0.03786 1.06% Castro::construct_new_gravity_source() 10 0.02278 0.02648 0.03188 0.89% Gravity::interpolate_monopole_grav() 21 0.02816 0.02903 0.03121 0.87% Castro::initialize_do_advance() 10 0.01257 0.01821 0.02199 0.62% Castro::computeTemp() 63 0.01738 0.01926 0.02065 0.58% VisMF::Write(FabArray) 2 0.01402 0.01466 0.01775 0.50% FabArray::Saxpy() 20 0.01091 0.01344 0.01496 0.42% Castro::initialize_advance() 10 0.008987 0.0117 0.0149 0.42% FabArray::setDomainBndry() 41 0.009129 0.01138 0.01256 0.35% MultiFab::contains_nan() 20 0.009744 0.01047 0.0116 0.32% Amr::writePlotFile() 2 0.007223 0.009937 0.0106 0.30% Castro::construct_old_gravity_source() 10 0.00713 0.009769 0.01038 0.29% Castro::initMFs() 1 0.006932 0.007473 0.008433 0.24% Castro::construct_new_source() 50 0.005584 0.006322 0.006796 0.19% main() 1 0.004717 0.005848 0.006747 0.19% StateData::define() 4 0.005764 0.006122 0.006597 0.18% Castro::enforce_min_density() 62 0.00581 0.006116 0.006461 0.18% Castro::swap_state_time_levels() 10 0.002669 0.004436 0.004705 0.13% Amr::coarseTimeStep() 10 0.001081 0.002658 0.004252 0.12% Gravity::get_new_grav_vector() 11 0.002961 0.003625 0.004072 0.11% Gravity::get_old_grav_vector() 10 0.001604 0.00196 0.002322 0.07% Castro::buildMetrics() 1 0.001662 0.001762 0.001922 0.05% Castro::finalize_do_advance() 10 0.0006219 0.001539 0.001802 0.05% Castro::expand_state() 10 0.0005982 0.0007291 0.0008901 0.02% Amr::InitAmr() 1 0.0002699 0.0002998 0.0004548 0.01% Amr::timeStep() 10 0.0001664 0.0002333 0.0003827 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002775 0.0002936 0.0003207 0.01% Castro::do_old_sources() 10 0.0001114 0.0001653 0.0001992 0.01% DistributionMapping::LeastUsedCPUs() 1 8.505e-06 0.0001685 0.0001957 0.01% Castro::clean_state() 62 0.000132 0.0001535 0.000172 0.00% Castro::finalize_advance() 10 7.307e-05 0.0001004 0.0001415 0.00% Castro::do_advance_ctu() 10 9.494e-05 0.0001155 0.0001366 0.00% StateDataPhysBCFunct::() 41 7.789e-05 9.388e-05 0.000109 0.00% Castro::enforce_consistent_e() 1 7.565e-05 8.335e-05 9.904e-05 0.00% Castro::construct_old_source() 50 4.31e-05 7.339e-05 9.385e-05 0.00% FabArray::ParallelCopy() 41 6.103e-05 7.594e-05 9.145e-05 0.00% Castro::Castro() 1 5.752e-05 7.092e-05 9.049e-05 0.00% Amr::FinalizeInit() 1 3.902e-06 1.546e-05 7.923e-05 0.00% Castro::do_new_sources() 10 4.458e-05 6.332e-05 7.548e-05 0.00% FillPatchSingleLevel 41 5.979e-05 6.87e-05 7.31e-05 0.00% Amr::writeSmallPlotFile() 1 2.506e-05 4.453e-05 6.031e-05 0.00% FabArrayBase::getCPC() 41 4.178e-05 5.211e-05 5.957e-05 0.00% Castro::construct_old_gravity() 10 3.905e-05 4.477e-05 5.453e-05 0.00% Castro::subcycle_advance_ctu() 10 4.033e-05 4.854e-05 5.398e-05 0.00% Castro::construct_new_gravity() 10 3.985e-05 4.718e-05 5.265e-05 0.00% Castro::apply_source_to_state() 20 3.322e-05 4.402e-05 5.132e-05 0.00% Castro::advance() 10 3.204e-05 4.113e-05 4.954e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.488e-05 2.317e-05 3.076e-05 0.00% Castro::enforce_speed_limit() 62 2.387e-05 2.818e-05 3.064e-05 0.00% FabArrayBase::CPC::define() 2 2.072e-05 2.387e-05 2.873e-05 0.00% Castro::check_for_nan() 20 2.139e-05 2.421e-05 2.66e-05 0.00% Amr::defBaseLevel() 1 1.334e-05 1.963e-05 2.437e-05 0.00% Gravity::swapTimeLevels() 10 1.213e-05 1.43e-05 1.913e-05 0.00% Castro::post_timestep() 10 1.248e-05 1.436e-05 1.669e-05 0.00% Gravity::set_mass_offset() 10 8.901e-06 1.099e-05 1.351e-05 0.00% Castro::computeNewDt() 9 7.94e-06 1.001e-05 1.335e-05 0.00% Castro::retry_advance_ctu() 10 7.259e-06 8.531e-06 1.332e-05 0.00% Castro::create_source_corrector() 10 7.718e-06 8.963e-06 1.037e-05 0.00% Castro::FluxRegCrseInit 10 8.158e-06 9.24e-06 1.028e-05 0.00% Amr::initSubcycle() 1 8.374e-06 9.216e-06 9.986e-06 0.00% Castro::computeInitialDt() 2 3.958e-06 5.64e-06 8.906e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.09e-06 5.766e-06 7.209e-06 0.00% Amr::InitializeInit() 1 2.037e-06 2.64e-06 5.212e-06 0.00% Castro::post_init() 1 3.229e-06 4.019e-06 4.823e-06 0.00% Castro::post_regrid() 1 1.92e-06 3.246e-06 4.732e-06 0.00% Castro::FluxRegFineAdd() 10 2.039e-06 2.369e-06 3.123e-06 0.00% Amr::init() 1 1.779e-06 2.354e-06 2.888e-06 0.00% Amr::initialInit() 1 1.279e-06 1.734e-06 2.053e-06 0.00% DistributionMapping::Distribute() 1 1.025e-06 1.165e-06 1.307e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.57 3.571 3.572 100.00% Amr::coarseTimeStep() 10 3.363 3.363 3.363 94.16% Amr::timeStep() 10 3.349 3.351 3.352 93.84% Castro::advance() 10 3.334 3.335 3.336 93.38% Castro::subcycle_advance_ctu() 10 3.243 3.253 3.26 91.26% Castro::do_advance_ctu() 10 3.243 3.253 3.26 91.26% Castro::construct_ctu_hydro_source() 10 2.46 2.464 2.468 69.08% Gravity::make_radial_gravity() 21 0.3371 0.3471 0.3614 10.12% Gravity::get_new_grav_vector() 11 0.2325 0.2339 0.2348 6.57% Castro::construct_old_gravity() 10 0.1921 0.2008 0.2132 5.97% Gravity::get_old_grav_vector() 10 0.1915 0.2 0.2126 5.95% Castro::construct_new_gravity() 10 0.2047 0.2055 0.2062 5.77% FillPatchIterator::Initialize 41 0.1585 0.1834 0.2011 5.63% Castro::initialize_do_advance() 10 0.1611 0.1774 0.1923 5.38% Amr::init() 1 0.191 0.1911 0.1912 5.35% check_for_negative_density() 10 0.02602 0.07863 0.1904 5.33% Amr::initialInit() 1 0.174 0.1742 0.1744 4.88% FillPatchSingleLevel 41 0.116 0.138 0.1553 4.35% Amr::InitializeInit() 1 0.05927 0.09966 0.1424 3.99% Amr::defBaseLevel() 1 0.05927 0.09966 0.1424 3.98% Castro::expand_state() 10 0.1042 0.1225 0.1376 3.85% Castro::estTimeStep() 21 0.02362 0.07831 0.128 3.58% Castro::initData() 1 0.04248 0.08183 0.1232 3.45% Castro::clean_state() 62 0.1121 0.1166 0.122 3.42% FabArray::ParallelCopy() 41 0.0775 0.1002 0.1211 3.39% Amr::FinalizeInit() 1 0.03201 0.07457 0.115 3.22% Castro::do_old_sources() 10 0.08779 0.09422 0.09828 2.75% FabArray::setVal() 143 0.06541 0.07515 0.08968 2.51% amrex::Copy() 193 0.06557 0.07751 0.0882 2.47% Castro::initialize_advance() 10 0.0708 0.07801 0.08814 2.47% FabArray::ParallelCopy_finish() 41 0.03547 0.05897 0.08609 2.41% Castro::computeInitialDt() 2 0.002216 0.0449 0.08531 2.39% Castro::do_new_sources() 10 0.05962 0.06904 0.08308 2.33% Castro::computeTemp() 63 0.06526 0.06894 0.0716 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04788 0.04968 0.05115 1.43% Castro::reset_internal_energy(Fab) 1008 0.0476 0.04939 0.05085 1.42% Castro::normalize_species() 62 0.04092 0.04228 0.04475 1.25% FabArray::ParallelCopy_nowait() 41 0.03499 0.04117 0.04322 1.21% StateDataPhysBCFunct::() 41 0.03406 0.03768 0.04295 1.20% StateData::FillBoundary(geom) 41 0.03399 0.03758 0.04284 1.20% Castro::construct_new_source() 50 0.02896 0.0328 0.03859 1.08% Castro::finalize_do_advance() 10 0.01235 0.02617 0.03609 1.01% Castro::construct_new_gravity_source() 10 0.02278 0.02648 0.03188 0.89% Gravity::interpolate_monopole_grav() 21 0.02816 0.02903 0.03121 0.87% Castro::post_init() 1 0.02917 0.02937 0.02958 0.83% Amr::writePlotFile() 2 0.02727 0.02745 0.02766 0.77% VisMF::Write(FabArray) 2 0.01402 0.01466 0.01775 0.50% Castro::post_timestep() 10 0.01513 0.01584 0.01646 0.46% Castro::apply_source_to_state() 20 0.01094 0.01348 0.01501 0.42% FabArray::Saxpy() 20 0.01091 0.01344 0.01496 0.42% FabArray::setDomainBndry() 41 0.009129 0.01138 0.01256 0.35% Castro::Castro() 1 0.01072 0.01149 0.01234 0.35% Castro::check_for_nan() 20 0.00977 0.01049 0.01162 0.33% MultiFab::contains_nan() 20 0.009744 0.01047 0.0116 0.32% Castro::construct_old_source() 50 0.007173 0.009843 0.01046 0.29% Castro::construct_old_gravity_source() 10 0.00713 0.009769 0.01038 0.29% Castro::computeNewDt() 9 0.008789 0.008799 0.008807 0.25% Castro::initMFs() 1 0.006932 0.007473 0.008433 0.24% AmrLevel::AmrLevel(dm) 1 0.005781 0.006145 0.006627 0.19% StateData::define() 4 0.005764 0.006122 0.006597 0.18% Castro::enforce_min_density() 62 0.00581 0.006116 0.006461 0.18% Castro::finalize_advance() 10 0.002962 0.003895 0.004746 0.13% Castro::swap_state_time_levels() 10 0.002669 0.004436 0.004705 0.13% Castro::buildMetrics() 1 0.001773 0.001893 0.002061 0.06% Castro::post_regrid() 1 0.001517 0.001567 0.001623 0.05% Amr::InitAmr() 1 0.0002788 0.000309 0.0004648 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.364e-05 0.0001754 0.0002041 0.01% DistributionMapping::LeastUsedCPUs() 1 8.505e-06 0.0001685 0.0001957 0.01% Castro::enforce_consistent_e() 1 7.565e-05 8.335e-05 9.904e-05 0.00% FabArrayBase::getCPC() 41 6.926e-05 7.598e-05 8.426e-05 0.00% Amr::writeSmallPlotFile() 1 2.506e-05 4.453e-05 6.031e-05 0.00% Castro::enforce_speed_limit() 62 2.387e-05 2.818e-05 3.064e-05 0.00% FabArrayBase::CPC::define() 2 2.072e-05 2.387e-05 2.873e-05 0.00% Gravity::swapTimeLevels() 10 1.213e-05 1.43e-05 1.913e-05 0.00% Gravity::set_mass_offset() 10 8.901e-06 1.099e-05 1.351e-05 0.00% Castro::retry_advance_ctu() 10 7.259e-06 8.531e-06 1.332e-05 0.00% Castro::create_source_corrector() 10 7.718e-06 8.963e-06 1.037e-05 0.00% Castro::FluxRegCrseInit 10 8.158e-06 9.24e-06 1.028e-05 0.00% Amr::initSubcycle() 1 8.374e-06 9.216e-06 9.986e-06 0.00% Castro::FluxRegFineAdd() 10 2.039e-06 2.369e-06 3.123e-06 0.00% DistributionMapping::Distribute() 1 1.025e-06 1.165e-06 1.307e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-6-g2589f265eeb4) finalized