MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-7-g88f03408f18a) initialized Starting run at 05:23:56 UTC on 2023-07-05. Successfully read inputs file ... Castro git describe: 23.07-3-g8dc29e1af AMReX git describe: 23.07-7-g88f03408f Microphysics git describe: 23.07-11-g6678fe90 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016393304 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361818101 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353934028 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329417192 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329398658 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331234751 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.376065963 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318815751 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313991156 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315662457 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315415572 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010553463 seconds Ending run at 05:23:59 UTC on 2023-07-05. Run time = 3.542876162 Run time without initialization = 3.363290113 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.543 ... 3.543 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3251 2.3705 2.4013 67.78% Gravity::make_radial_gravity() 21 0.3153 0.326 0.3431 9.68% check_for_negative_density() 10 0.036 0.0703 0.119 3.36% Castro::initData() 1 0.03886 0.07732 0.1125 3.18% Castro::estTimeStep() 21 0.02318 0.0627 0.1036 2.93% amrex::Copy() 193 0.06493 0.0799 0.096 2.71% FabArray::ParallelCopy_finish() 41 0.03618 0.0594 0.09516 2.69% FabArray::setVal() 143 0.06255 0.07176 0.0805 2.27% Castro::reset_internal_energy(Fab) 1008 0.04726 0.04941 0.05164 1.46% FabArray::ParallelCopy_nowait() 41 0.03462 0.04173 0.04485 1.27% Castro::normalize_species() 62 0.04112 0.04187 0.04253 1.20% StateData::FillBoundary(geom) 41 0.03415 0.03699 0.0392 1.11% FillPatchIterator::Initialize 41 0.02775 0.03387 0.03737 1.05% Gravity::interpolate_monopole_grav() 21 0.02827 0.02883 0.03001 0.85% Castro::construct_new_gravity_source() 10 0.02227 0.02432 0.02659 0.75% Castro::computeTemp() 63 0.01715 0.01908 0.02035 0.57% Castro::initialize_do_advance() 10 0.01147 0.01662 0.01823 0.51% FabArray::setDomainBndry() 41 0.008762 0.0117 0.01814 0.51% VisMF::Write(FabArray) 2 0.01336 0.01438 0.01707 0.48% Castro::initialize_advance() 10 0.009339 0.01258 0.01634 0.46% FabArray::Saxpy() 20 0.01072 0.01271 0.01364 0.39% MultiFab::contains_nan() 20 0.009695 0.01072 0.01176 0.33% Amr::writePlotFile() 2 0.00739 0.009705 0.01104 0.31% Castro::construct_old_gravity_source() 10 0.006447 0.009414 0.01021 0.29% Castro::initMFs() 1 0.006999 0.007423 0.009262 0.26% Castro::construct_new_source() 50 0.00584 0.006364 0.00686 0.19% StateData::define() 4 0.005814 0.005986 0.006619 0.19% main() 1 0.005537 0.006003 0.006346 0.18% Castro::enforce_min_density() 62 0.005716 0.006019 0.006267 0.18% Castro::swap_state_time_levels() 10 0.003348 0.004407 0.00477 0.13% Gravity::get_new_grav_vector() 11 0.003016 0.003524 0.003881 0.11% Amr::coarseTimeStep() 10 0.001251 0.002027 0.002672 0.08% Gravity::get_old_grav_vector() 10 0.001486 0.001896 0.002283 0.06% Castro::finalize_do_advance() 10 0.0005589 0.001809 0.002283 0.06% Castro::buildMetrics() 1 0.001624 0.001689 0.001919 0.05% Castro::expand_state() 10 0.0005925 0.001026 0.001226 0.03% Amr::InitAmr() 1 0.0002589 0.0002875 0.0003989 0.01% Amr::timeStep() 10 0.0001664 0.0002307 0.0003954 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002775 0.0002975 0.0003198 0.01% Castro::do_old_sources() 10 0.0001267 0.0001642 0.0001962 0.01% StateDataPhysBCFunct::() 41 7.973e-05 0.0001198 0.0001694 0.00% Castro::do_advance_ctu() 10 9.354e-05 0.0001292 0.0001677 0.00% Castro::clean_state() 62 0.0001361 0.0001473 0.000164 0.00% DistributionMapping::LeastUsedCPUs() 1 7.128e-06 0.000116 0.0001353 0.00% Castro::finalize_advance() 10 7.89e-05 0.0001036 0.0001156 0.00% FabArray::ParallelCopy() 41 6.65e-05 8.082e-05 0.0001065 0.00% Castro::enforce_consistent_e() 1 7.733e-05 8.648e-05 9.823e-05 0.00% Castro::Castro() 1 5.898e-05 7.138e-05 8.508e-05 0.00% FillPatchSingleLevel 41 6.178e-05 7.18e-05 8.374e-05 0.00% Amr::FinalizeInit() 1 4.043e-06 1.469e-05 8.362e-05 0.00% Castro::do_new_sources() 10 5.277e-05 6.237e-05 7.788e-05 0.00% Castro::construct_old_source() 50 5.019e-05 6.326e-05 7.214e-05 0.00% Castro::construct_new_gravity() 10 4.067e-05 4.997e-05 6.908e-05 0.00% Amr::writeSmallPlotFile() 1 2.601e-05 4.853e-05 6.482e-05 0.00% FabArrayBase::getCPC() 41 4.521e-05 5.512e-05 6.19e-05 0.00% Castro::construct_old_gravity() 10 3.771e-05 4.597e-05 5.983e-05 0.00% Castro::subcycle_advance_ctu() 10 3.997e-05 4.664e-05 5.199e-05 0.00% Castro::apply_source_to_state() 20 3.088e-05 4.382e-05 4.841e-05 0.00% Castro::advance() 10 3.506e-05 4.128e-05 4.828e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.16e-05 3e-05 4.111e-05 0.00% Castro::enforce_speed_limit() 62 2.26e-05 2.856e-05 3.668e-05 0.00% FabArrayBase::CPC::define() 2 2.188e-05 2.505e-05 2.983e-05 0.00% Castro::check_for_nan() 20 2.145e-05 2.397e-05 2.689e-05 0.00% Amr::defBaseLevel() 1 1.427e-05 1.918e-05 2.604e-05 0.00% Gravity::swapTimeLevels() 10 1.303e-05 1.532e-05 1.978e-05 0.00% Castro::post_timestep() 10 1.174e-05 1.504e-05 1.752e-05 0.00% Gravity::set_mass_offset() 10 8.319e-06 1.064e-05 1.238e-05 0.00% Castro::computeNewDt() 9 8.461e-06 1.039e-05 1.165e-05 0.00% Amr::initSubcycle() 1 8.357e-06 8.925e-06 1.017e-05 0.00% Castro::create_source_corrector() 10 7.351e-06 8.738e-06 9.729e-06 0.00% Castro::FluxRegCrseInit 10 8.321e-06 8.981e-06 9.616e-06 0.00% Castro::retry_advance_ctu() 10 6.461e-06 7.218e-06 9.133e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.68e-06 5.539e-06 7.195e-06 0.00% Castro::computeInitialDt() 2 4.085e-06 4.661e-06 5.21e-06 0.00% Amr::InitializeInit() 1 1.772e-06 2.515e-06 5.07e-06 0.00% Castro::post_init() 1 2.819e-06 3.694e-06 4.56e-06 0.00% Castro::post_regrid() 1 2.026e-06 3.198e-06 4.522e-06 0.00% Amr::init() 1 1.811e-06 2.289e-06 2.951e-06 0.00% Castro::FluxRegFineAdd() 10 1.974e-06 2.21e-06 2.718e-06 0.00% Amr::initialInit() 1 1.34e-06 1.856e-06 2.456e-06 0.00% DistributionMapping::Distribute() 1 8.53e-07 1.114e-06 1.358e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.543 3.543 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 94.45% Amr::timeStep() 10 3.334 3.335 3.336 94.15% Castro::advance() 10 3.318 3.319 3.319 93.69% Castro::subcycle_advance_ctu() 10 3.237 3.241 3.25 91.74% Castro::do_advance_ctu() 10 3.237 3.241 3.25 91.73% Castro::construct_ctu_hydro_source() 10 2.458 2.462 2.466 69.60% Gravity::make_radial_gravity() 21 0.3321 0.3421 0.3571 10.08% Gravity::get_new_grav_vector() 11 0.2205 0.2221 0.2232 6.30% Castro::construct_old_gravity() 10 0.1963 0.2052 0.2179 6.15% Gravity::get_old_grav_vector() 10 0.1952 0.2044 0.2173 6.13% FillPatchIterator::Initialize 41 0.1659 0.1841 0.2024 5.71% Castro::construct_new_gravity() 10 0.1956 0.1966 0.1974 5.57% Castro::initialize_do_advance() 10 0.1728 0.1796 0.1846 5.21% Amr::init() 1 0.179 0.1791 0.1792 5.06% FillPatchSingleLevel 41 0.1164 0.1385 0.1659 4.68% Amr::initialInit() 1 0.1624 0.163 0.1634 4.61% Amr::InitializeInit() 1 0.06126 0.09909 0.134 3.78% Amr::defBaseLevel() 1 0.06126 0.09909 0.134 3.78% Castro::expand_state() 10 0.1192 0.1264 0.1304 3.68% FabArray::ParallelCopy() 41 0.07949 0.1013 0.13 3.67% Castro::clean_state() 62 0.1119 0.1159 0.1194 3.37% check_for_negative_density() 10 0.036 0.0703 0.119 3.36% Castro::initData() 1 0.04255 0.08129 0.1166 3.29% Castro::estTimeStep() 21 0.02318 0.0627 0.1036 2.93% Castro::do_old_sources() 10 0.09343 0.09762 0.1028 2.90% Amr::FinalizeInit() 1 0.02934 0.0639 0.102 2.88% amrex::Copy() 193 0.06493 0.0799 0.096 2.71% FabArray::ParallelCopy_finish() 41 0.03618 0.0594 0.09516 2.69% FabArray::setVal() 143 0.06255 0.07176 0.0805 2.27% Castro::initialize_advance() 10 0.06427 0.07491 0.0789 2.23% Castro::computeInitialDt() 2 0.002004 0.0369 0.07474 2.11% Castro::computeTemp() 63 0.06469 0.06879 0.07232 2.04% Castro::do_new_sources() 10 0.06007 0.06448 0.07158 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04754 0.04971 0.05196 1.47% Castro::reset_internal_energy(Fab) 1008 0.04726 0.04941 0.05164 1.46% FabArray::ParallelCopy_nowait() 41 0.0347 0.04182 0.04492 1.27% Castro::normalize_species() 62 0.04112 0.04187 0.04253 1.20% StateDataPhysBCFunct::() 41 0.03423 0.03711 0.03935 1.11% StateData::FillBoundary(geom) 41 0.03415 0.03699 0.0392 1.11% Castro::construct_new_source() 50 0.02811 0.03068 0.03328 0.94% Gravity::interpolate_monopole_grav() 21 0.02827 0.02883 0.03001 0.85% Amr::writePlotFile() 2 0.0264 0.02678 0.02722 0.77% Castro::post_init() 1 0.02594 0.02647 0.02692 0.76% Castro::construct_new_gravity_source() 10 0.02227 0.02432 0.02659 0.75% Castro::finalize_do_advance() 10 0.01229 0.0192 0.02464 0.70% FabArray::setDomainBndry() 41 0.008762 0.0117 0.01814 0.51% VisMF::Write(FabArray) 2 0.01336 0.01438 0.01707 0.48% Castro::post_timestep() 10 0.01512 0.01574 0.01619 0.46% Castro::apply_source_to_state() 20 0.01077 0.01276 0.01369 0.39% FabArray::Saxpy() 20 0.01072 0.01271 0.01364 0.39% Castro::Castro() 1 0.01132 0.01164 0.01263 0.36% Castro::check_for_nan() 20 0.009719 0.01074 0.01179 0.33% MultiFab::contains_nan() 20 0.009695 0.01072 0.01176 0.33% Castro::construct_old_source() 50 0.0065 0.009477 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.006447 0.009414 0.01021 0.29% Castro::initMFs() 1 0.006999 0.007423 0.009262 0.26% Castro::computeNewDt() 9 0.008414 0.008418 0.008424 0.24% AmrLevel::AmrLevel(dm) 1 0.00585 0.006016 0.006656 0.19% StateData::define() 4 0.005814 0.005986 0.006619 0.19% Castro::enforce_min_density() 62 0.005716 0.006019 0.006267 0.18% Castro::swap_state_time_levels() 10 0.003348 0.004407 0.00477 0.13% Castro::finalize_advance() 10 0.003079 0.003283 0.003483 0.10% Castro::buildMetrics() 1 0.001742 0.001821 0.002083 0.06% Castro::post_regrid() 1 0.001513 0.00158 0.001664 0.05% Amr::InitAmr() 1 0.0002673 0.0002964 0.0004074 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.166e-05 0.0001226 0.0001429 0.00% DistributionMapping::LeastUsedCPUs() 1 7.128e-06 0.000116 0.0001353 0.00% Castro::enforce_consistent_e() 1 7.733e-05 8.648e-05 9.823e-05 0.00% FabArrayBase::getCPC() 41 6.71e-05 8.017e-05 8.878e-05 0.00% Amr::writeSmallPlotFile() 1 2.601e-05 4.853e-05 6.482e-05 0.00% Castro::enforce_speed_limit() 62 2.26e-05 2.856e-05 3.668e-05 0.00% FabArrayBase::CPC::define() 2 2.188e-05 2.505e-05 2.983e-05 0.00% Gravity::swapTimeLevels() 10 1.303e-05 1.532e-05 1.978e-05 0.00% Gravity::set_mass_offset() 10 8.319e-06 1.064e-05 1.238e-05 0.00% Amr::initSubcycle() 1 8.357e-06 8.925e-06 1.017e-05 0.00% Castro::create_source_corrector() 10 7.351e-06 8.738e-06 9.729e-06 0.00% Castro::FluxRegCrseInit 10 8.321e-06 8.981e-06 9.616e-06 0.00% Castro::retry_advance_ctu() 10 6.461e-06 7.218e-06 9.133e-06 0.00% Castro::FluxRegFineAdd() 10 1.974e-06 2.21e-06 2.718e-06 0.00% DistributionMapping::Distribute() 1 8.53e-07 1.114e-06 1.358e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-7-g88f03408f18a) finalized