MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-9-g28df482cebf2) initialized Starting run at 05:29:47 UTC on 2023-07-06. Successfully read inputs file ... Castro git describe: 23.07-3-g8dc29e1af AMReX git describe: 23.07-9-g28df482ce Microphysics git describe: 23.07-12-gbc626e8f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016114423 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361899003 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362521439 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329542101 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327998599 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365975469 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346435316 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313373935 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.323923729 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314983977 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313686519 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01045627 seconds Ending run at 05:29:51 UTC on 2023-07-06. Run time = 3.608064653 Run time without initialization = 3.378593925 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.607 ... 3.608 ... 3.608 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3283 2.3709 2.4312 67.38% Gravity::make_radial_gravity() 21 0.3176 0.326 0.3382 9.37% Castro::initData() 1 0.04058 0.08761 0.1554 4.31% Castro::estTimeStep() 21 0.03945 0.1045 0.1525 4.23% check_for_negative_density() 10 0.02416 0.08788 0.1318 3.65% FabArray::ParallelCopy_finish() 41 0.03924 0.05706 0.09277 2.57% FabArray::setVal() 143 0.06127 0.07099 0.08646 2.40% amrex::Copy() 193 0.06476 0.07672 0.08612 2.39% Castro::reset_internal_energy(Fab) 1008 0.0484 0.05001 0.05283 1.46% FabArray::ParallelCopy_nowait() 41 0.03631 0.04093 0.04256 1.18% Castro::normalize_species() 62 0.04154 0.04192 0.04248 1.18% StateData::FillBoundary(geom) 41 0.03408 0.03653 0.04061 1.13% FillPatchIterator::Initialize 41 0.0299 0.03304 0.03514 0.97% Castro::construct_new_gravity_source() 10 0.02278 0.02573 0.03027 0.84% Gravity::interpolate_monopole_grav() 21 0.02794 0.02814 0.02846 0.79% Castro::initialize_do_advance() 10 0.01288 0.0181 0.02155 0.60% Castro::computeTemp() 63 0.01848 0.01973 0.02068 0.57% VisMF::Write(FabArray) 2 0.01369 0.0145 0.01726 0.48% Castro::initialize_advance() 10 0.004144 0.01048 0.01444 0.40% FabArray::Saxpy() 20 0.01093 0.01266 0.01365 0.38% FabArray::setDomainBndry() 41 0.008652 0.01101 0.01244 0.34% MultiFab::contains_nan() 20 0.00974 0.01056 0.01128 0.31% Castro::initMFs() 1 0.006912 0.008044 0.01068 0.30% Amr::writePlotFile() 2 0.006805 0.009631 0.01044 0.29% Castro::construct_old_gravity_source() 10 0.007121 0.009622 0.01026 0.28% StateData::define() 4 0.005772 0.006538 0.008373 0.23% main() 1 0.00598 0.00662 0.007062 0.20% Castro::construct_new_source() 50 0.005724 0.006182 0.006509 0.18% Castro::enforce_min_density() 62 0.005674 0.005963 0.006226 0.17% Gravity::get_new_grav_vector() 11 0.003176 0.003868 0.006188 0.17% Castro::swap_state_time_levels() 10 0.003369 0.004518 0.004768 0.13% Amr::coarseTimeStep() 10 0.001384 0.002362 0.0033 0.09% Castro::buildMetrics() 1 0.001612 0.001866 0.002413 0.07% Gravity::get_old_grav_vector() 10 0.00167 0.001956 0.002285 0.06% Castro::finalize_do_advance() 10 0.0006981 0.001565 0.001951 0.05% AmrLevel::FillPatch() 41 0.0009816 0.001139 0.001381 0.04% Amr::InitAmr() 1 0.0002801 0.0003897 0.0005585 0.02% Amr::timeStep() 10 0.0001727 0.0002474 0.0005482 0.02% Castro::reset_internal_energy(MultiFab) 63 0.000279 0.0002995 0.0003388 0.01% DistributionMapping::LeastUsedCPUs() 1 5.86e-06 0.0002173 0.0003378 0.01% Castro::clean_state() 62 0.0001389 0.0001504 0.0001763 0.00% Castro::do_advance_ctu() 10 9.625e-05 0.0001192 0.0001462 0.00% Castro::enforce_consistent_e() 1 8.13e-05 9.954e-05 0.0001454 0.00% FillPatchIterator::FillFromLevel0() 41 9.797e-05 0.000112 0.0001355 0.00% Castro::finalize_advance() 10 7.77e-05 9.856e-05 0.000126 0.00% Castro::do_old_sources() 10 7.445e-05 9.265e-05 0.0001081 0.00% StateDataPhysBCFunct::() 41 7.617e-05 9.245e-05 0.0001037 0.00% Castro::construct_old_source() 50 5.684e-05 7.335e-05 9.667e-05 0.00% FabArray::ParallelCopy() 41 7.319e-05 8.326e-05 9.498e-05 0.00% Castro::Castro() 1 5.651e-05 6.877e-05 8.305e-05 0.00% Amr::FinalizeInit() 1 3.665e-06 1.47e-05 7.983e-05 0.00% FillPatchSingleLevel 41 6.099e-05 6.969e-05 7.509e-05 0.00% Castro::do_new_sources() 10 5.559e-05 6.459e-05 7.065e-05 0.00% FabArrayBase::getCPC() 41 4.053e-05 4.741e-05 6.791e-05 0.00% Amr::writeSmallPlotFile() 1 2.901e-05 4.042e-05 6.765e-05 0.00% Castro::subcycle_advance_ctu() 10 3.905e-05 4.832e-05 6.296e-05 0.00% Castro::construct_new_gravity() 10 3.741e-05 4.6e-05 5.426e-05 0.00% Castro::apply_source_to_state() 20 3.437e-05 4.309e-05 5.134e-05 0.00% Castro::construct_old_gravity() 10 3.682e-05 4.476e-05 5.073e-05 0.00% Castro::advance() 10 3.809e-05 4.284e-05 4.851e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.515e-05 3.193e-05 4.255e-05 0.00% Castro::expand_state() 10 2.067e-05 2.524e-05 4.045e-05 0.00% Castro::enforce_speed_limit() 62 2.421e-05 2.717e-05 3.34e-05 0.00% FabArrayBase::CPC::define() 2 2.169e-05 2.367e-05 2.655e-05 0.00% Amr::defBaseLevel() 1 1.266e-05 1.781e-05 2.635e-05 0.00% Castro::check_for_nan() 20 2.102e-05 2.361e-05 2.611e-05 0.00% Castro::post_timestep() 10 1.352e-05 1.593e-05 2.371e-05 0.00% Gravity::swapTimeLevels() 10 1.156e-05 1.377e-05 1.853e-05 0.00% Amr::initSubcycle() 1 8.688e-06 1.166e-05 1.667e-05 0.00% Gravity::set_mass_offset() 10 9.041e-06 1.101e-05 1.389e-05 0.00% Castro::computeNewDt() 9 7.526e-06 9.074e-06 1.142e-05 0.00% Castro::create_source_corrector() 10 6.823e-06 8.822e-06 9.963e-06 0.00% Castro::FluxRegCrseInit 10 7.239e-06 8.05e-06 9.163e-06 0.00% Castro::post_regrid() 1 1.788e-06 4.782e-06 9.041e-06 0.00% Castro::retry_advance_ctu() 10 6.466e-06 7.433e-06 8.612e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.04e-06 5.405e-06 7.088e-06 0.00% Castro::computeInitialDt() 2 3.514e-06 4.492e-06 5.689e-06 0.00% Amr::InitializeInit() 1 2.055e-06 2.629e-06 5.31e-06 0.00% Castro::post_init() 1 3.043e-06 4.299e-06 5.045e-06 0.00% Amr::init() 1 1.653e-06 2.275e-06 2.805e-06 0.00% Amr::initialInit() 1 1.401e-06 1.963e-06 2.798e-06 0.00% Castro::FluxRegFineAdd() 10 1.886e-06 2.147e-06 2.421e-06 0.00% DistributionMapping::Distribute() 1 8.4e-07 1.106e-06 1.396e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.607 3.608 3.608 100.00% Amr::coarseTimeStep() 10 3.361 3.361 3.361 93.16% Amr::timeStep() 10 3.348 3.349 3.35 92.85% Castro::advance() 10 3.332 3.333 3.334 92.41% Castro::subcycle_advance_ctu() 10 3.244 3.257 3.269 90.60% Castro::do_advance_ctu() 10 3.244 3.256 3.269 90.60% Castro::construct_ctu_hydro_source() 10 2.476 2.48 2.484 68.85% Gravity::make_radial_gravity() 21 0.3337 0.3421 0.3519 9.75% Gravity::get_new_grav_vector() 11 0.2256 0.2289 0.2305 6.39% Amr::init() 1 0.2287 0.2289 0.229 6.35% AmrLevel::FillPatch() 41 0.1848 0.2094 0.2284 6.33% Amr::initialInit() 1 0.2125 0.2127 0.2129 5.90% Castro::construct_new_gravity() 10 0.2 0.2026 0.2039 5.65% FillPatchIterator::Initialize 41 0.1551 0.179 0.2037 5.65% Castro::construct_old_gravity() 10 0.1897 0.1956 0.2034 5.64% Gravity::get_old_grav_vector() 10 0.189 0.195 0.2027 5.62% Castro::initialize_do_advance() 10 0.1645 0.1787 0.1882 5.22% Amr::InitializeInit() 1 0.06185 0.1105 0.1825 5.06% Amr::defBaseLevel() 1 0.06185 0.1105 0.1825 5.06% FillPatchIterator::FillFromLevel0() 41 0.1152 0.1349 0.1651 4.58% FillPatchSingleLevel 41 0.1151 0.1348 0.165 4.57% Castro::initData() 1 0.04504 0.09172 0.1591 4.41% Castro::estTimeStep() 21 0.03945 0.1045 0.1525 4.23% Amr::FinalizeInit() 1 0.03009 0.1021 0.1506 4.17% Castro::expand_state() 10 0.1071 0.124 0.1352 3.75% check_for_negative_density() 10 0.02416 0.08788 0.1318 3.65% FabArray::ParallelCopy() 41 0.07988 0.09814 0.1293 3.58% Castro::computeInitialDt() 2 0.002098 0.07421 0.1227 3.40% Castro::clean_state() 62 0.115 0.117 0.1207 3.34% Castro::do_old_sources() 10 0.08883 0.09276 0.09778 2.71% FabArray::ParallelCopy_finish() 41 0.03924 0.05706 0.09277 2.57% FabArray::setVal() 143 0.06127 0.07099 0.08646 2.40% amrex::Copy() 193 0.06476 0.07672 0.08612 2.39% Castro::initialize_advance() 10 0.05948 0.0729 0.08521 2.36% Castro::do_new_sources() 10 0.05961 0.0672 0.0786 2.18% Castro::computeTemp() 63 0.06786 0.07004 0.07382 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04869 0.0503 0.05314 1.47% Castro::reset_internal_energy(Fab) 1008 0.0484 0.05001 0.05283 1.46% FabArray::ParallelCopy_nowait() 41 0.03641 0.041 0.04263 1.18% Castro::normalize_species() 62 0.04154 0.04192 0.04248 1.18% StateDataPhysBCFunct::() 41 0.03418 0.03662 0.04072 1.13% StateData::FillBoundary(geom) 41 0.03408 0.03653 0.04061 1.13% Castro::construct_new_source() 50 0.02896 0.03191 0.03674 1.02% Castro::finalize_do_advance() 10 0.01201 0.02343 0.03189 0.88% Castro::construct_new_gravity_source() 10 0.02278 0.02573 0.03027 0.84% Gravity::interpolate_monopole_grav() 21 0.02794 0.02814 0.02846 0.79% Castro::post_init() 1 0.027 0.0274 0.02766 0.77% Amr::writePlotFile() 2 0.02664 0.02679 0.02695 0.75% VisMF::Write(FabArray) 2 0.01369 0.0145 0.01726 0.48% Castro::post_timestep() 10 0.01561 0.01589 0.01619 0.45% Castro::Castro() 1 0.01088 0.012 0.01487 0.41% Castro::apply_source_to_state() 20 0.01098 0.01271 0.0137 0.38% FabArray::Saxpy() 20 0.01093 0.01266 0.01365 0.38% FabArray::setDomainBndry() 41 0.008652 0.01101 0.01244 0.34% Castro::check_for_nan() 20 0.009762 0.01058 0.0113 0.31% MultiFab::contains_nan() 20 0.00974 0.01056 0.01128 0.31% Castro::initMFs() 1 0.006912 0.008044 0.01068 0.30% Castro::construct_old_source() 50 0.007178 0.009695 0.01036 0.29% Castro::construct_old_gravity_source() 10 0.007121 0.009622 0.01026 0.28% AmrLevel::AmrLevel(dm) 1 0.005801 0.006569 0.008413 0.23% Castro::computeNewDt() 9 0.008389 0.008396 0.008403 0.23% StateData::define() 4 0.005772 0.006538 0.008373 0.23% Castro::enforce_min_density() 62 0.005674 0.005963 0.006226 0.17% Castro::swap_state_time_levels() 10 0.003369 0.004518 0.004768 0.13% Castro::finalize_advance() 10 0.00296 0.003643 0.004632 0.13% Castro::buildMetrics() 1 0.001743 0.002025 0.002635 0.07% Castro::post_regrid() 1 0.001531 0.001655 0.00199 0.06% Amr::InitAmr() 1 0.0002899 0.0004014 0.0005751 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.082e-05 0.0002238 0.000346 0.01% DistributionMapping::LeastUsedCPUs() 1 5.86e-06 0.0002173 0.0003378 0.01% Castro::enforce_consistent_e() 1 8.13e-05 9.954e-05 0.0001454 0.00% FabArrayBase::getCPC() 41 6.359e-05 7.108e-05 9.446e-05 0.00% Amr::writeSmallPlotFile() 1 2.901e-05 4.042e-05 6.765e-05 0.00% Castro::enforce_speed_limit() 62 2.421e-05 2.717e-05 3.34e-05 0.00% FabArrayBase::CPC::define() 2 2.169e-05 2.367e-05 2.655e-05 0.00% Gravity::swapTimeLevels() 10 1.156e-05 1.377e-05 1.853e-05 0.00% Amr::initSubcycle() 1 8.688e-06 1.166e-05 1.667e-05 0.00% Gravity::set_mass_offset() 10 9.041e-06 1.101e-05 1.389e-05 0.00% Castro::create_source_corrector() 10 6.823e-06 8.822e-06 9.963e-06 0.00% Castro::FluxRegCrseInit 10 7.239e-06 8.05e-06 9.163e-06 0.00% Castro::retry_advance_ctu() 10 6.466e-06 7.433e-06 8.612e-06 0.00% Castro::FluxRegFineAdd() 10 1.886e-06 2.147e-06 2.421e-06 0.00% DistributionMapping::Distribute() 1 8.4e-07 1.106e-06 1.396e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-9-g28df482cebf2) finalized