MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-12-gbc806f0f15ce) initialized Starting run at 05:29:48 UTC on 2023-07-07. Successfully read inputs file ... Castro git describe: 23.07-4-gaf60b8b0f AMReX git describe: 23.07-12-gbc806f0f1 Microphysics git describe: 23.07-14-gd5726e5b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016354006 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371270218 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.37390114 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336508092 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335139207 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.370953162 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341011532 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315582999 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315633613 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317833534 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31698308 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010482117 seconds Ending run at 05:29:51 UTC on 2023-07-07. Run time = 3.618351314 Run time without initialization = 3.413107804 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.617 ... 3.618 ... 3.618 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3321 2.3903 2.4211 66.91% Gravity::make_radial_gravity() 21 0.3189 0.3305 0.345 9.54% check_for_negative_density() 10 0.06564 0.0982 0.1611 4.45% Castro::estTimeStep() 21 0.03725 0.0823 0.1336 3.69% Castro::initData() 1 0.03891 0.08303 0.1335 3.69% amrex::Copy() 193 0.06502 0.07819 0.08825 2.44% FabArray::ParallelCopy_finish() 41 0.03761 0.05397 0.08353 2.31% FabArray::setVal() 143 0.06323 0.0709 0.08134 2.25% Castro::reset_internal_energy(Fab) 1008 0.0477 0.04973 0.05229 1.45% FabArray::ParallelCopy_nowait() 41 0.03532 0.04192 0.04355 1.20% Castro::normalize_species() 62 0.04159 0.04225 0.04301 1.19% StateData::FillBoundary(geom) 41 0.03514 0.03725 0.03924 1.08% FillPatchIterator::Initialize 41 0.02932 0.03472 0.03705 1.02% Gravity::interpolate_monopole_grav() 21 0.02782 0.02827 0.02926 0.81% Castro::construct_new_gravity_source() 10 0.02279 0.02516 0.02849 0.79% Castro::initialize_do_advance() 10 0.01197 0.0184 0.02198 0.61% Castro::computeTemp() 63 0.01749 0.01912 0.02046 0.57% VisMF::Write(FabArray) 2 0.0135 0.0144 0.0175 0.48% Castro::initialize_advance() 10 0.00875 0.01151 0.01545 0.43% FabArray::Saxpy() 20 0.01106 0.01274 0.01359 0.38% FabArray::setDomainBndry() 41 0.008793 0.01167 0.01335 0.37% Amr::writePlotFile() 2 0.00682 0.01012 0.01179 0.33% MultiFab::contains_nan() 20 0.01 0.01058 0.0116 0.32% Castro::construct_old_gravity_source() 10 0.007191 0.009727 0.01031 0.28% Castro::initMFs() 1 0.006991 0.007608 0.009071 0.25% StateData::define() 4 0.005821 0.006201 0.007192 0.20% main() 1 0.005377 0.006487 0.007032 0.19% Castro::construct_new_source() 50 0.005742 0.006205 0.006461 0.18% Castro::enforce_min_density() 62 0.00571 0.006008 0.006345 0.18% Gravity::get_new_grav_vector() 11 0.003016 0.004177 0.006115 0.17% Castro::swap_state_time_levels() 10 0.00335 0.004508 0.005419 0.15% Amr::coarseTimeStep() 10 0.001195 0.00227 0.003049 0.08% Gravity::get_old_grav_vector() 10 0.00165 0.002057 0.002717 0.08% Castro::buildMetrics() 1 0.001677 0.0018 0.002125 0.06% Castro::finalize_do_advance() 10 0.0006971 0.001669 0.001971 0.05% AmrLevel::FillPatch() 41 0.0009177 0.001139 0.00139 0.04% Amr::InitAmr() 1 0.0002749 0.0003197 0.0004699 0.01% Amr::timeStep() 10 0.0001613 0.0002289 0.0003872 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002823 0.0002997 0.0003297 0.01% DistributionMapping::LeastUsedCPUs() 1 7.563e-06 0.0001587 0.000201 0.01% Castro::clean_state() 62 0.0001452 0.0001537 0.0001762 0.00% FillPatchIterator::FillFromLevel0() 41 9.139e-05 0.0001124 0.0001314 0.00% Castro::do_advance_ctu() 10 0.0001002 0.0001136 0.0001308 0.00% Castro::finalize_advance() 10 9.01e-05 0.0001051 0.0001236 0.00% StateDataPhysBCFunct::() 41 8.055e-05 0.0001005 0.0001214 0.00% Castro::do_old_sources() 10 7.294e-05 9.197e-05 0.000111 0.00% Castro::enforce_consistent_e() 1 8.233e-05 8.671e-05 9.272e-05 0.00% FillPatchSingleLevel 41 5.982e-05 7.116e-05 8.815e-05 0.00% FabArray::ParallelCopy() 41 7.412e-05 8.14e-05 8.695e-05 0.00% Castro::Castro() 1 6.006e-05 7.019e-05 8.345e-05 0.00% Castro::construct_old_source() 50 5.105e-05 6.872e-05 8.224e-05 0.00% Castro::do_new_sources() 10 5.203e-05 6.448e-05 7.244e-05 0.00% Amr::FinalizeInit() 1 3.813e-06 1.28e-05 7.071e-05 0.00% Amr::writeSmallPlotFile() 1 2.577e-05 6.067e-05 6.971e-05 0.00% FabArrayBase::getCPC() 41 4.052e-05 5.421e-05 6.544e-05 0.00% Castro::subcycle_advance_ctu() 10 3.927e-05 4.863e-05 6.055e-05 0.00% Castro::construct_new_gravity() 10 4.057e-05 4.739e-05 5.823e-05 0.00% Castro::advance() 10 3.374e-05 4.349e-05 5.708e-05 0.00% Castro::apply_source_to_state() 20 3.21e-05 4.14e-05 5.686e-05 0.00% Castro::construct_old_gravity() 10 3.724e-05 4.672e-05 5.554e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.59e-05 3.315e-05 4.296e-05 0.00% Castro::check_for_nan() 20 2.178e-05 2.591e-05 4.057e-05 0.00% Castro::expand_state() 10 2.046e-05 2.627e-05 3.423e-05 0.00% Castro::enforce_speed_limit() 62 2.563e-05 2.701e-05 2.913e-05 0.00% FabArrayBase::CPC::define() 2 2.061e-05 2.363e-05 2.722e-05 0.00% Amr::defBaseLevel() 1 1.248e-05 1.636e-05 2.248e-05 0.00% Castro::post_timestep() 10 1.224e-05 1.421e-05 1.686e-05 0.00% Gravity::swapTimeLevels() 10 1.109e-05 1.346e-05 1.588e-05 0.00% Amr::initSubcycle() 1 8.373e-06 9.742e-06 1.49e-05 0.00% Gravity::set_mass_offset() 10 8.736e-06 1.08e-05 1.343e-05 0.00% Castro::computeNewDt() 9 8.868e-06 1.072e-05 1.238e-05 0.00% Castro::create_source_corrector() 10 6.988e-06 8.938e-06 9.716e-06 0.00% Castro::FluxRegCrseInit 10 8.061e-06 8.398e-06 9.612e-06 0.00% Castro::retry_advance_ctu() 10 6.404e-06 7.417e-06 8.267e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.296e-06 5.757e-06 6.718e-06 0.00% Castro::post_init() 1 2.979e-06 4.053e-06 5.57e-06 0.00% Amr::InitializeInit() 1 1.77e-06 2.541e-06 5.503e-06 0.00% Castro::computeInitialDt() 2 3.467e-06 4.282e-06 4.928e-06 0.00% Castro::post_regrid() 1 2.067e-06 2.897e-06 4.528e-06 0.00% Castro::FluxRegFineAdd() 10 2.014e-06 2.217e-06 2.457e-06 0.00% Amr::init() 1 1.895e-06 2.086e-06 2.426e-06 0.00% Amr::initialInit() 1 1.431e-06 1.725e-06 1.967e-06 0.00% DistributionMapping::Distribute() 1 1.018e-06 1.083e-06 1.378e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.617 3.618 3.618 100.00% Amr::coarseTimeStep() 10 3.396 3.396 3.396 93.84% Amr::timeStep() 10 3.383 3.384 3.385 93.55% Castro::advance() 10 3.367 3.368 3.368 93.09% Castro::subcycle_advance_ctu() 10 3.283 3.291 3.295 91.06% Castro::do_advance_ctu() 10 3.283 3.291 3.295 91.06% Castro::construct_ctu_hydro_source() 10 2.506 2.51 2.514 69.47% Gravity::make_radial_gravity() 21 0.3354 0.3473 0.3592 9.93% Gravity::get_new_grav_vector() 11 0.2275 0.2303 0.2321 6.42% AmrLevel::FillPatch() 41 0.1917 0.2108 0.2212 6.11% Castro::construct_old_gravity() 10 0.1951 0.2011 0.2098 5.80% Gravity::get_old_grav_vector() 10 0.1944 0.2005 0.2092 5.78% Amr::init() 1 0.2046 0.2048 0.2048 5.66% Castro::construct_new_gravity() 10 0.2007 0.2026 0.2037 5.63% FillPatchIterator::Initialize 41 0.1633 0.18 0.1925 5.32% Amr::initialInit() 1 0.188 0.1882 0.1885 5.21% Castro::initialize_do_advance() 10 0.168 0.1779 0.1844 5.10% check_for_negative_density() 10 0.06564 0.0982 0.1611 4.45% Amr::InitializeInit() 1 0.06006 0.105 0.1565 4.33% Amr::defBaseLevel() 1 0.06005 0.105 0.1565 4.33% FillPatchIterator::FillFromLevel0() 41 0.1169 0.1336 0.1544 4.27% FillPatchSingleLevel 41 0.1168 0.1335 0.1543 4.27% Castro::initData() 1 0.04293 0.08705 0.1376 3.80% Castro::estTimeStep() 21 0.03725 0.0823 0.1336 3.69% Castro::expand_state() 10 0.1098 0.1226 0.1299 3.59% Amr::FinalizeInit() 1 0.03202 0.08319 0.1282 3.54% Castro::clean_state() 62 0.1137 0.1166 0.1206 3.33% FabArray::ParallelCopy() 41 0.08048 0.09605 0.119 3.29% Castro::computeInitialDt() 2 0.002334 0.05386 0.09882 2.73% Castro::do_old_sources() 10 0.09234 0.09517 0.09813 2.71% amrex::Copy() 193 0.06502 0.07819 0.08825 2.44% FabArray::ParallelCopy_finish() 41 0.03761 0.05397 0.08353 2.31% FabArray::setVal() 143 0.06323 0.0709 0.08134 2.25% Castro::initialize_advance() 10 0.06857 0.07327 0.08115 2.24% Castro::do_new_sources() 10 0.06009 0.06654 0.07611 2.10% Castro::computeTemp() 63 0.06547 0.06915 0.07307 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04799 0.05003 0.05261 1.45% Castro::reset_internal_energy(Fab) 1008 0.0477 0.04973 0.05229 1.45% FabArray::ParallelCopy_nowait() 41 0.03541 0.042 0.04362 1.21% Castro::normalize_species() 62 0.04159 0.04225 0.04301 1.19% StateDataPhysBCFunct::() 41 0.03524 0.03735 0.03933 1.09% StateData::FillBoundary(geom) 41 0.03514 0.03725 0.03924 1.08% Castro::construct_new_source() 50 0.0289 0.03137 0.03484 0.96% Gravity::interpolate_monopole_grav() 21 0.02782 0.02827 0.02926 0.81% Castro::post_init() 1 0.02858 0.02884 0.02909 0.80% Castro::finalize_do_advance() 10 0.01163 0.02172 0.02864 0.79% Castro::construct_new_gravity_source() 10 0.02279 0.02516 0.02849 0.79% Amr::writePlotFile() 2 0.02682 0.02717 0.0274 0.76% VisMF::Write(FabArray) 2 0.0135 0.0144 0.0175 0.48% Castro::post_timestep() 10 0.01561 0.01598 0.01636 0.45% Castro::apply_source_to_state() 20 0.0111 0.01278 0.01363 0.38% FabArray::Saxpy() 20 0.01106 0.01274 0.01359 0.38% FabArray::setDomainBndry() 41 0.008793 0.01167 0.01335 0.37% Castro::Castro() 1 0.01103 0.01151 0.0126 0.35% Castro::check_for_nan() 20 0.01003 0.01061 0.01163 0.32% MultiFab::contains_nan() 20 0.01 0.01058 0.0116 0.32% Castro::construct_old_source() 50 0.007243 0.009796 0.01039 0.29% Castro::construct_old_gravity_source() 10 0.007191 0.009727 0.01031 0.28% Castro::initMFs() 1 0.006991 0.007608 0.009071 0.25% Castro::computeNewDt() 9 0.0084 0.008407 0.008412 0.23% AmrLevel::AmrLevel(dm) 1 0.005847 0.006234 0.007226 0.20% StateData::define() 4 0.005821 0.006201 0.007192 0.20% Castro::enforce_min_density() 62 0.00571 0.006008 0.006345 0.18% Castro::swap_state_time_levels() 10 0.00335 0.004508 0.005419 0.15% Castro::finalize_advance() 10 0.002993 0.003548 0.004239 0.12% Castro::buildMetrics() 1 0.001813 0.001954 0.002319 0.06% Castro::post_regrid() 1 0.001593 0.00167 0.001843 0.05% Amr::InitAmr() 1 0.0002837 0.0003295 0.0004799 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.292e-05 0.0001655 0.0002085 0.01% DistributionMapping::LeastUsedCPUs() 1 7.563e-06 0.0001587 0.000201 0.01% Castro::enforce_consistent_e() 1 8.233e-05 8.671e-05 9.272e-05 0.00% FabArrayBase::getCPC() 41 6.357e-05 7.785e-05 8.879e-05 0.00% Amr::writeSmallPlotFile() 1 2.577e-05 6.067e-05 6.971e-05 0.00% Castro::enforce_speed_limit() 62 2.563e-05 2.701e-05 2.913e-05 0.00% FabArrayBase::CPC::define() 2 2.061e-05 2.363e-05 2.722e-05 0.00% Gravity::swapTimeLevels() 10 1.109e-05 1.346e-05 1.588e-05 0.00% Amr::initSubcycle() 1 8.373e-06 9.742e-06 1.49e-05 0.00% Gravity::set_mass_offset() 10 8.736e-06 1.08e-05 1.343e-05 0.00% Castro::create_source_corrector() 10 6.988e-06 8.938e-06 9.716e-06 0.00% Castro::FluxRegCrseInit 10 8.061e-06 8.398e-06 9.612e-06 0.00% Castro::retry_advance_ctu() 10 6.404e-06 7.417e-06 8.267e-06 0.00% Castro::FluxRegFineAdd() 10 2.014e-06 2.217e-06 2.457e-06 0.00% DistributionMapping::Distribute() 1 1.018e-06 1.083e-06 1.378e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-12-gbc806f0f15ce) finalized