MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-13-gb41f85ab36ac) initialized Starting run at 17:24:37 UTC on 2023-07-08. Successfully read inputs file ... Castro git describe: 23.07-24-g8ffe34660 AMReX git describe: 23.07-13-gb41f85ab3 Microphysics git describe: 23.07-19-g4bea489a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015907453 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367394402 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.401457973 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327738737 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329382919 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361112837 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336790581 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312927986 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314270335 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315129256 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314184613 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010839143 seconds Ending run at 17:24:40 UTC on 2023-07-08. Run time = 3.614870111 Run time without initialization = 3.398733393 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.614 ... 3.615 ... 3.615 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3188 2.3707 2.4392 67.48% Gravity::make_radial_gravity() 21 0.3262 0.3336 0.3414 9.44% Castro::estTimeStep() 21 0.02835 0.09762 0.1523 4.21% check_for_negative_density() 10 0.02679 0.0996 0.1515 4.19% Castro::initData() 1 0.03866 0.08465 0.1412 3.91% FabArray::ParallelCopy_finish() 41 0.03896 0.05488 0.08641 2.39% amrex::Copy() 193 0.0658 0.07673 0.08606 2.38% FabArray::setVal() 143 0.06235 0.06955 0.08011 2.22% Castro::reset_internal_energy(Fab) 1008 0.0486 0.05032 0.05186 1.43% Castro::normalize_species() 62 0.04073 0.04172 0.04375 1.21% FabArray::ParallelCopy_nowait() 41 0.03705 0.04132 0.0431 1.19% StateData::FillBoundary(geom) 41 0.03456 0.0363 0.039 1.08% FillPatchIterator::Initialize 41 0.02998 0.03339 0.03555 0.98% Castro::construct_new_gravity_source() 10 0.02268 0.02628 0.03344 0.93% Gravity::interpolate_monopole_grav() 21 0.02761 0.02796 0.02813 0.78% Castro::initialize_do_advance() 10 0.01276 0.01786 0.02112 0.58% Castro::computeTemp() 63 0.01951 0.02006 0.02103 0.58% VisMF::Write(FabArray) 2 0.01371 0.01447 0.01711 0.47% Castro::initialize_advance() 10 0.004539 0.01048 0.01453 0.40% FabArray::Saxpy() 20 0.01067 0.01257 0.01352 0.37% FabArray::setDomainBndry() 41 0.008774 0.011 0.01214 0.34% MultiFab::contains_nan() 20 0.009852 0.01054 0.01113 0.31% Amr::writePlotFile() 2 0.007123 0.009728 0.01091 0.30% Castro::initMFs() 1 0.006988 0.008018 0.01088 0.30% Castro::construct_old_gravity_source() 10 0.007081 0.009682 0.01034 0.29% StateData::define() 4 0.005808 0.006502 0.00848 0.23% main() 1 0.005639 0.006294 0.006718 0.19% Castro::enforce_min_density() 62 0.00566 0.006018 0.006574 0.18% Castro::construct_new_source() 50 0.006028 0.006224 0.00648 0.18% Castro::swap_state_time_levels() 10 0.003376 0.004423 0.004782 0.13% Gravity::get_new_grav_vector() 11 0.003144 0.00374 0.004648 0.13% Amr::coarseTimeStep() 10 0.001248 0.002907 0.004028 0.11% Castro::buildMetrics() 1 0.001638 0.001846 0.002424 0.07% Gravity::get_old_grav_vector() 10 0.001554 0.001903 0.002318 0.06% Castro::finalize_do_advance() 10 0.0007246 0.001616 0.002006 0.06% AmrLevel::FillPatch() 41 0.0009315 0.001068 0.00127 0.04% Amr::InitAmr() 1 0.0002759 0.0003708 0.0005809 0.02% Amr::timeStep() 10 0.0001886 0.0002394 0.0004514 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002924 0.000309 0.0003417 0.01% DistributionMapping::LeastUsedCPUs() 1 7.769e-06 0.0002292 0.0003237 0.01% Castro::do_advance_ctu() 10 0.000144 0.0001615 0.0001785 0.00% Castro::clean_state() 62 0.0001432 0.0001547 0.0001661 0.00% StateDataPhysBCFunct::() 41 8.53e-05 0.0001005 0.0001326 0.00% Castro::finalize_advance() 10 9.177e-05 0.0001056 0.0001229 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001002 0.0001058 0.0001128 0.00% Castro::do_old_sources() 10 7.308e-05 9.232e-05 0.0001054 0.00% Castro::Castro() 1 6.418e-05 8.118e-05 9.56e-05 0.00% Amr::FinalizeInit() 1 4.243e-06 1.73e-05 9.524e-05 0.00% Castro::enforce_consistent_e() 1 7.902e-05 8.658e-05 9.499e-05 0.00% Castro::do_new_sources() 10 5.422e-05 6.658e-05 8.595e-05 0.00% Castro::construct_old_source() 50 4.91e-05 6.87e-05 8.364e-05 0.00% FabArray::ParallelCopy() 41 6.657e-05 7.189e-05 7.814e-05 0.00% FillPatchSingleLevel 41 6.446e-05 6.87e-05 7.427e-05 0.00% Amr::writeSmallPlotFile() 1 2.604e-05 5.459e-05 7.055e-05 0.00% Castro::advance() 10 4.148e-05 4.75e-05 6.01e-05 0.00% Castro::subcycle_advance_ctu() 10 4.284e-05 4.713e-05 5.887e-05 0.00% FabArrayBase::getCPC() 41 4.503e-05 4.921e-05 5.852e-05 0.00% Castro::construct_old_gravity() 10 4.288e-05 4.842e-05 5.573e-05 0.00% Castro::apply_source_to_state() 20 4.112e-05 4.514e-05 4.979e-05 0.00% Amr::defBaseLevel() 1 2.621e-05 3.37e-05 4.488e-05 0.00% Castro::construct_new_gravity() 10 3.473e-05 3.887e-05 4.427e-05 0.00% Castro::enforce_speed_limit() 62 2.542e-05 3.211e-05 3.984e-05 0.00% Castro::expand_state() 10 2.22e-05 2.564e-05 3.336e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.535e-05 2.173e-05 3.234e-05 0.00% FabArrayBase::CPC::define() 2 1.999e-05 2.46e-05 3.131e-05 0.00% Castro::check_for_nan() 20 2.101e-05 2.334e-05 2.71e-05 0.00% Gravity::swapTimeLevels() 10 1.111e-05 1.442e-05 1.906e-05 0.00% Amr::initSubcycle() 1 8.551e-06 1.136e-05 1.9e-05 0.00% Castro::post_timestep() 10 1.142e-05 1.405e-05 1.633e-05 0.00% Gravity::set_mass_offset() 10 8.697e-06 1.117e-05 1.442e-05 0.00% Castro::computeNewDt() 9 9.046e-06 1.057e-05 1.214e-05 0.00% Castro::retry_advance_ctu() 10 6.78e-06 8.089e-06 9.692e-06 0.00% Castro::create_source_corrector() 10 6.725e-06 8.357e-06 9.291e-06 0.00% Castro::FluxRegCrseInit 10 6.989e-06 7.919e-06 8.871e-06 0.00% Castro::post_regrid() 1 1.869e-06 3.995e-06 7.685e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.134e-06 5.015e-06 6.94e-06 0.00% Castro::computeInitialDt() 2 3.924e-06 4.824e-06 6.002e-06 0.00% Castro::post_init() 1 3.459e-06 4.288e-06 5.218e-06 0.00% Amr::InitializeInit() 1 2.027e-06 2.626e-06 4.938e-06 0.00% Amr::init() 1 2.038e-06 2.753e-06 3.303e-06 0.00% Castro::FluxRegFineAdd() 10 2.318e-06 2.608e-06 3.021e-06 0.00% Amr::initialInit() 1 1.496e-06 1.804e-06 2.206e-06 0.00% DistributionMapping::Distribute() 1 8.99e-07 1.195e-06 1.667e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.614 3.615 3.615 100.00% Amr::coarseTimeStep() 10 3.381 3.381 3.381 93.54% Amr::timeStep() 10 3.367 3.368 3.37 93.22% Castro::advance() 10 3.351 3.352 3.353 92.74% Castro::subcycle_advance_ctu() 10 3.27 3.277 3.286 90.89% Castro::do_advance_ctu() 10 3.269 3.277 3.285 90.89% Castro::construct_ctu_hydro_source() 10 2.488 2.491 2.494 68.98% Gravity::make_radial_gravity() 21 0.3428 0.3497 0.3579 9.90% AmrLevel::FillPatch() 41 0.1884 0.2073 0.2261 6.26% Gravity::get_new_grav_vector() 11 0.2208 0.2225 0.2241 6.20% Amr::init() 1 0.2154 0.2156 0.2157 5.97% Castro::construct_old_gravity() 10 0.2018 0.2087 0.2154 5.96% Gravity::get_old_grav_vector() 10 0.2013 0.2082 0.2148 5.94% FillPatchIterator::Initialize 41 0.1591 0.1773 0.2009 5.56% Amr::initialInit() 1 0.1993 0.1996 0.1998 5.53% Castro::construct_new_gravity() 10 0.1945 0.1953 0.1962 5.43% Castro::initialize_do_advance() 10 0.1666 0.1771 0.1866 5.16% Amr::InitializeInit() 1 0.06029 0.1076 0.1685 4.66% Amr::defBaseLevel() 1 0.06029 0.1075 0.1685 4.66% FillPatchIterator::FillFromLevel0() 41 0.1179 0.1329 0.1618 4.48% FillPatchSingleLevel 41 0.1178 0.1328 0.1617 4.47% Castro::estTimeStep() 21 0.02835 0.09762 0.1523 4.21% check_for_negative_density() 10 0.02679 0.0996 0.1515 4.19% Castro::initData() 1 0.04257 0.08854 0.1449 4.01% Amr::FinalizeInit() 1 0.0309 0.09207 0.1393 3.85% Castro::expand_state() 10 0.1093 0.1219 0.1333 3.69% FabArray::ParallelCopy() 41 0.08138 0.09634 0.1236 3.42% Castro::clean_state() 62 0.1148 0.1177 0.1228 3.40% Castro::computeInitialDt() 2 0.00203 0.06322 0.1106 3.06% Castro::do_old_sources() 10 0.09007 0.09355 0.09622 2.66% FabArray::ParallelCopy_finish() 41 0.03896 0.05488 0.08641 2.39% amrex::Copy() 193 0.0658 0.07673 0.08606 2.38% Castro::do_new_sources() 10 0.05937 0.06768 0.08154 2.26% FabArray::setVal() 143 0.06235 0.06955 0.08011 2.22% Castro::initialize_advance() 10 0.06181 0.07135 0.07891 2.18% Castro::computeTemp() 63 0.06874 0.07069 0.07322 2.03% Castro::reset_internal_energy(MultiFab) 63 0.0489 0.05063 0.05218 1.44% Castro::reset_internal_energy(Fab) 1008 0.0486 0.05032 0.05186 1.43% Castro::normalize_species() 62 0.04073 0.04172 0.04375 1.21% FabArray::ParallelCopy_nowait() 41 0.03714 0.04139 0.04317 1.19% Castro::construct_new_source() 50 0.02888 0.03251 0.03992 1.10% StateDataPhysBCFunct::() 41 0.03466 0.0364 0.0391 1.08% StateData::FillBoundary(geom) 41 0.03456 0.0363 0.039 1.08% Castro::finalize_do_advance() 10 0.01365 0.02702 0.03619 1.00% Castro::construct_new_gravity_source() 10 0.02268 0.02628 0.03344 0.93% Castro::post_init() 1 0.02777 0.02827 0.02846 0.79% Gravity::interpolate_monopole_grav() 21 0.02761 0.02796 0.02813 0.78% Amr::writePlotFile() 2 0.0268 0.0269 0.02704 0.75% Castro::post_timestep() 10 0.01554 0.01617 0.01726 0.48% VisMF::Write(FabArray) 2 0.01371 0.01447 0.01711 0.47% Castro::Castro() 1 0.0111 0.01222 0.01509 0.42% Castro::apply_source_to_state() 20 0.01071 0.01262 0.01357 0.38% FabArray::Saxpy() 20 0.01067 0.01257 0.01352 0.37% FabArray::setDomainBndry() 41 0.008774 0.011 0.01214 0.34% Castro::check_for_nan() 20 0.009875 0.01056 0.01116 0.31% MultiFab::contains_nan() 20 0.009852 0.01054 0.01113 0.31% Castro::initMFs() 1 0.006988 0.008018 0.01088 0.30% Castro::construct_old_source() 50 0.00713 0.009751 0.01043 0.29% Castro::construct_old_gravity_source() 10 0.007081 0.009682 0.01034 0.29% Castro::computeNewDt() 9 0.009013 0.009022 0.009026 0.25% AmrLevel::AmrLevel(dm) 1 0.005827 0.006524 0.008512 0.24% StateData::define() 4 0.005808 0.006502 0.00848 0.23% Castro::enforce_min_density() 62 0.00566 0.006018 0.006574 0.18% Castro::swap_state_time_levels() 10 0.003376 0.004423 0.004782 0.13% Castro::finalize_advance() 10 0.003122 0.003565 0.004019 0.11% Castro::buildMetrics() 1 0.00177 0.002 0.002643 0.07% Castro::post_regrid() 1 0.001546 0.001648 0.002003 0.06% Amr::InitAmr() 1 0.0002848 0.0003822 0.0005999 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.422e-05 0.0002354 0.000332 0.01% DistributionMapping::LeastUsedCPUs() 1 7.769e-06 0.0002292 0.0003237 0.01% Castro::enforce_consistent_e() 1 7.902e-05 8.658e-05 9.499e-05 0.00% FabArrayBase::getCPC() 41 6.502e-05 7.38e-05 8.179e-05 0.00% Amr::writeSmallPlotFile() 1 2.604e-05 5.459e-05 7.055e-05 0.00% Castro::enforce_speed_limit() 62 2.542e-05 3.211e-05 3.984e-05 0.00% FabArrayBase::CPC::define() 2 1.999e-05 2.46e-05 3.131e-05 0.00% Gravity::swapTimeLevels() 10 1.111e-05 1.442e-05 1.906e-05 0.00% Amr::initSubcycle() 1 8.551e-06 1.136e-05 1.9e-05 0.00% Gravity::set_mass_offset() 10 8.697e-06 1.117e-05 1.442e-05 0.00% Castro::retry_advance_ctu() 10 6.78e-06 8.089e-06 9.692e-06 0.00% Castro::create_source_corrector() 10 6.725e-06 8.357e-06 9.291e-06 0.00% Castro::FluxRegCrseInit 10 6.989e-06 7.919e-06 8.871e-06 0.00% Castro::FluxRegFineAdd() 10 2.318e-06 2.608e-06 3.021e-06 0.00% DistributionMapping::Distribute() 1 8.99e-07 1.195e-06 1.667e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 37 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-13-gb41f85ab36ac) finalized