MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-13-gb41f85ab36ac) initialized Starting run at 15:26:54 UTC on 2023-07-09. Successfully read inputs file ... Castro git describe: 23.07-7-g262f79bb2 AMReX git describe: 23.07-13-gb41f85ab3 Microphysics git describe: 23.07-19-g4bea489a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015690001 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361843128 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347355459 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325811129 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327332915 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351516947 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344354556 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312742972 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310922545 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310476966 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312816447 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010325574 seconds Ending run at 15:26:58 UTC on 2023-07-09. Run time = 3.548315807 Run time without initialization = 3.322903914 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.547 ... 3.548 ... 3.548 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3034 2.3477 2.3789 67.04% Gravity::make_radial_gravity() 21 0.3148 0.3238 0.3381 9.53% Castro::estTimeStep() 21 0.0216 0.0923 0.1608 4.53% Castro::initData() 1 0.03849 0.09519 0.1531 4.31% check_for_negative_density() 10 0.0277 0.0599 0.1065 3.00% FabArray::ParallelCopy_finish() 41 0.03233 0.05538 0.08709 2.45% amrex::Copy() 193 0.06384 0.07712 0.08654 2.44% FabArray::setVal() 143 0.06208 0.072 0.08646 2.44% Castro::reset_internal_energy(Fab) 1008 0.04829 0.05034 0.05236 1.48% Castro::normalize_species() 62 0.04099 0.04212 0.0434 1.22% FabArray::ParallelCopy_nowait() 41 0.03635 0.04059 0.04255 1.20% StateData::FillBoundary(geom) 41 0.03188 0.03462 0.0363 1.02% FillPatchIterator::Initialize 41 0.02823 0.03278 0.0352 0.99% Castro::construct_new_gravity_source() 10 0.02226 0.02509 0.029 0.82% Gravity::interpolate_monopole_grav() 21 0.02764 0.02798 0.02822 0.80% Castro::initialize_do_advance() 10 0.01192 0.01803 0.02239 0.63% Castro::computeTemp() 63 0.01931 0.01986 0.0204 0.57% VisMF::Write(FabArray) 2 0.01313 0.01407 0.01679 0.47% Castro::initialize_advance() 10 0.004066 0.01039 0.01459 0.41% FabArray::Saxpy() 20 0.01092 0.01277 0.01345 0.38% FabArray::setDomainBndry() 41 0.008601 0.011 0.01209 0.34% Amr::writePlotFile() 2 0.006771 0.009746 0.01195 0.34% MultiFab::contains_nan() 20 0.009564 0.0106 0.0115 0.32% Castro::initMFs() 1 0.006999 0.00876 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.00716 0.009634 0.0103 0.29% StateData::define() 4 0.00575 0.0072 0.008472 0.24% main() 1 0.005436 0.006143 0.006592 0.19% Castro::enforce_min_density() 62 0.005659 0.006143 0.006545 0.18% Castro::construct_new_source() 50 0.005823 0.006194 0.006407 0.18% Gravity::get_new_grav_vector() 11 0.002884 0.003825 0.005811 0.16% Castro::swap_state_time_levels() 10 0.003381 0.004471 0.004845 0.14% Amr::coarseTimeStep() 10 0.001636 0.002357 0.00288 0.08% Castro::buildMetrics() 1 0.001653 0.002065 0.002443 0.07% Gravity::get_old_grav_vector() 10 0.001678 0.001961 0.002259 0.06% Castro::finalize_do_advance() 10 0.0006103 0.001584 0.001966 0.06% AmrLevel::FillPatch() 41 0.0008578 0.001183 0.001311 0.04% Amr::InitAmr() 1 0.000297 0.0004226 0.0006647 0.02% Amr::timeStep() 10 0.0001644 0.0002399 0.0005309 0.01% DistributionMapping::LeastUsedCPUs() 1 7.846e-06 0.0002686 0.0004125 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002807 0.0003012 0.0003357 0.01% Castro::clean_state() 62 0.0001432 0.0001666 0.0002217 0.01% Castro::do_advance_ctu() 10 0.0001279 0.0001739 0.0002131 0.01% Castro::enforce_consistent_e() 1 7.371e-05 0.0001096 0.0001638 0.00% FillPatchIterator::FillFromLevel0() 41 9.36e-05 0.0001112 0.0001323 0.00% StateDataPhysBCFunct::() 41 8.578e-05 0.0001053 0.0001276 0.00% Castro::finalize_advance() 10 8.366e-05 0.0001002 0.0001174 0.00% Castro::do_old_sources() 10 7.179e-05 9.253e-05 0.000109 0.00% FabArray::ParallelCopy() 41 6.443e-05 7.297e-05 9.584e-05 0.00% Amr::FinalizeInit() 1 3.866e-06 1.611e-05 9.103e-05 0.00% Castro::Castro() 1 5.668e-05 7.11e-05 8.793e-05 0.00% FillPatchSingleLevel 41 5.9e-05 6.596e-05 8.172e-05 0.00% Castro::construct_old_source() 50 5.368e-05 6.732e-05 7.666e-05 0.00% FabArrayBase::getCPC() 41 3.687e-05 5.067e-05 6.831e-05 0.00% Castro::do_new_sources() 10 5.114e-05 6.164e-05 6.764e-05 0.00% Amr::writeSmallPlotFile() 1 2.857e-05 4.768e-05 6.378e-05 0.00% Castro::subcycle_advance_ctu() 10 3.891e-05 4.975e-05 6.124e-05 0.00% Castro::construct_new_gravity() 10 3.427e-05 4.393e-05 5.984e-05 0.00% Castro::apply_source_to_state() 20 3.621e-05 4.452e-05 5.718e-05 0.00% Castro::advance() 10 4.272e-05 4.59e-05 5.212e-05 0.00% Castro::construct_old_gravity() 10 4.388e-05 4.683e-05 5.163e-05 0.00% Amr::defBaseLevel() 1 3.387e-05 4.113e-05 4.87e-05 0.00% Castro::enforce_speed_limit() 62 2.611e-05 3.039e-05 3.719e-05 0.00% FabArrayBase::CPC::define() 2 2.188e-05 2.452e-05 3.454e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.408e-05 2.13e-05 3.031e-05 0.00% Castro::expand_state() 10 2.182e-05 2.465e-05 2.855e-05 0.00% Castro::check_for_nan() 20 2.09e-05 2.319e-05 2.589e-05 0.00% Castro::post_timestep() 10 1.267e-05 1.489e-05 2.163e-05 0.00% Gravity::swapTimeLevels() 10 1.143e-05 1.384e-05 1.731e-05 0.00% Amr::initSubcycle() 1 8.596e-06 1.259e-05 1.614e-05 0.00% Gravity::set_mass_offset() 10 9.311e-06 1.11e-05 1.317e-05 0.00% Castro::computeNewDt() 9 8.303e-06 1.049e-05 1.233e-05 0.00% Castro::create_source_corrector() 10 7.884e-06 8.805e-06 1.035e-05 0.00% Castro::FluxRegCrseInit 10 7.263e-06 7.7e-06 8.656e-06 0.00% Castro::retry_advance_ctu() 10 6.709e-06 7.106e-06 7.944e-06 0.00% Amr::initialInit() 1 1.667e-06 2.602e-06 7.447e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.048e-06 5.339e-06 7.087e-06 0.00% Castro::post_regrid() 1 2.207e-06 3.642e-06 6.401e-06 0.00% Amr::InitializeInit() 1 2.145e-06 2.837e-06 6.065e-06 0.00% Castro::computeInitialDt() 2 3.58e-06 4.717e-06 5.876e-06 0.00% Castro::post_init() 1 3.426e-06 4.129e-06 5.265e-06 0.00% Amr::init() 1 1.911e-06 2.314e-06 3.129e-06 0.00% Castro::FluxRegFineAdd() 10 1.749e-06 2.099e-06 2.254e-06 0.00% DistributionMapping::Distribute() 1 9.63e-07 1.238e-06 1.61e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.547 3.548 3.548 100.00% Amr::coarseTimeStep() 10 3.306 3.306 3.306 93.17% Amr::timeStep() 10 3.294 3.294 3.295 92.85% Castro::advance() 10 3.277 3.278 3.279 92.41% Castro::subcycle_advance_ctu() 10 3.189 3.2 3.209 90.43% Castro::do_advance_ctu() 10 3.189 3.2 3.209 90.43% Castro::construct_ctu_hydro_source() 10 2.426 2.43 2.433 68.57% Gravity::make_radial_gravity() 21 0.3316 0.3398 0.3511 9.89% Gravity::get_new_grav_vector() 11 0.2229 0.2276 0.2308 6.50% Amr::init() 1 0.2246 0.2249 0.225 6.34% AmrLevel::FillPatch() 41 0.184 0.2055 0.2204 6.21% Amr::initialInit() 1 0.2083 0.2089 0.2092 5.90% Castro::construct_new_gravity() 10 0.1994 0.2034 0.2057 5.80% Castro::construct_old_gravity() 10 0.188 0.1932 0.2008 5.66% Gravity::get_old_grav_vector() 10 0.1874 0.1926 0.2002 5.64% FillPatchIterator::Initialize 41 0.1536 0.1748 0.1965 5.54% Castro::initialize_do_advance() 10 0.1624 0.1762 0.1862 5.25% Amr::InitializeInit() 1 0.0587 0.1201 0.1806 5.09% Amr::defBaseLevel() 1 0.0587 0.1201 0.1806 5.09% Castro::estTimeStep() 21 0.0216 0.0923 0.1608 4.53% FillPatchIterator::FillFromLevel0() 41 0.1077 0.131 0.1596 4.50% FillPatchSingleLevel 41 0.1076 0.1309 0.1595 4.50% Castro::initData() 1 0.04211 0.09975 0.1573 4.43% Amr::FinalizeInit() 1 0.02808 0.0888 0.1502 4.23% Castro::expand_state() 10 0.1048 0.1217 0.1326 3.74% Castro::computeInitialDt() 2 0.00221 0.06285 0.1244 3.50% FabArray::ParallelCopy() 41 0.07257 0.09612 0.1236 3.48% Castro::clean_state() 62 0.1152 0.1177 0.1219 3.44% check_for_negative_density() 10 0.0277 0.0599 0.1065 3.00% Castro::do_old_sources() 10 0.08949 0.09237 0.09527 2.69% FabArray::ParallelCopy_finish() 41 0.03233 0.05538 0.08709 2.45% amrex::Copy() 193 0.06384 0.07712 0.08654 2.44% FabArray::setVal() 143 0.06208 0.072 0.08646 2.44% Castro::initialize_advance() 10 0.06424 0.07398 0.08507 2.40% Castro::do_new_sources() 10 0.05912 0.06649 0.0774 2.18% Castro::computeTemp() 63 0.06803 0.07051 0.07305 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04857 0.05064 0.05265 1.48% Castro::reset_internal_energy(Fab) 1008 0.04829 0.05034 0.05236 1.48% Castro::normalize_species() 62 0.04099 0.04212 0.0434 1.22% FabArray::ParallelCopy_nowait() 41 0.03645 0.04067 0.04262 1.20% StateDataPhysBCFunct::() 41 0.032 0.03472 0.03643 1.03% StateData::FillBoundary(geom) 41 0.03188 0.03462 0.0363 1.02% Castro::construct_new_source() 50 0.02846 0.03128 0.03536 1.00% Castro::finalize_do_advance() 10 0.01142 0.02249 0.03017 0.85% Castro::construct_new_gravity_source() 10 0.02226 0.02509 0.029 0.82% Gravity::interpolate_monopole_grav() 21 0.02764 0.02798 0.02822 0.80% Amr::writePlotFile() 2 0.02624 0.02642 0.02683 0.76% Castro::post_init() 1 0.02499 0.02539 0.02563 0.72% VisMF::Write(FabArray) 2 0.01313 0.01407 0.01679 0.47% Castro::post_timestep() 10 0.01555 0.01597 0.01633 0.46% Castro::Castro() 1 0.01036 0.01277 0.01506 0.42% Castro::apply_source_to_state() 20 0.01097 0.01282 0.0135 0.38% FabArray::Saxpy() 20 0.01092 0.01277 0.01345 0.38% FabArray::setDomainBndry() 41 0.008601 0.011 0.01209 0.34% Castro::check_for_nan() 20 0.009588 0.01063 0.01152 0.32% MultiFab::contains_nan() 20 0.009564 0.0106 0.0115 0.32% Castro::construct_old_source() 50 0.007214 0.009702 0.01037 0.29% Castro::initMFs() 1 0.006999 0.00876 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.00716 0.009634 0.0103 0.29% Castro::computeNewDt() 9 0.008546 0.008559 0.008573 0.24% AmrLevel::AmrLevel(dm) 1 0.005766 0.007221 0.008492 0.24% StateData::define() 4 0.00575 0.0072 0.008472 0.24% Castro::enforce_min_density() 62 0.005659 0.006143 0.006545 0.18% Castro::swap_state_time_levels() 10 0.003381 0.004471 0.004845 0.14% Castro::finalize_advance() 10 0.002947 0.003803 0.004786 0.13% Castro::buildMetrics() 1 0.001764 0.002231 0.002666 0.08% Castro::post_regrid() 1 0.001507 0.001616 0.001831 0.05% Amr::InitAmr() 1 0.0003067 0.0004352 0.0006805 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.313e-05 0.0002751 0.0004204 0.01% DistributionMapping::LeastUsedCPUs() 1 7.846e-06 0.0002686 0.0004125 0.01% Castro::enforce_consistent_e() 1 7.371e-05 0.0001096 0.0001638 0.00% FabArrayBase::getCPC() 41 6.121e-05 7.519e-05 0.0001029 0.00% Amr::writeSmallPlotFile() 1 2.857e-05 4.768e-05 6.378e-05 0.00% Castro::enforce_speed_limit() 62 2.611e-05 3.039e-05 3.719e-05 0.00% FabArrayBase::CPC::define() 2 2.188e-05 2.452e-05 3.454e-05 0.00% Gravity::swapTimeLevels() 10 1.143e-05 1.384e-05 1.731e-05 0.00% Amr::initSubcycle() 1 8.596e-06 1.259e-05 1.614e-05 0.00% Gravity::set_mass_offset() 10 9.311e-06 1.11e-05 1.317e-05 0.00% Castro::create_source_corrector() 10 7.884e-06 8.805e-06 1.035e-05 0.00% Castro::FluxRegCrseInit 10 7.263e-06 7.7e-06 8.656e-06 0.00% Castro::retry_advance_ctu() 10 6.709e-06 7.106e-06 7.944e-06 0.00% Castro::FluxRegFineAdd() 10 1.749e-06 2.099e-06 2.254e-06 0.00% DistributionMapping::Distribute() 1 9.63e-07 1.238e-06 1.61e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 39 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-13-gb41f85ab36ac) finalized