MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-13-gb41f85ab36ac) initialized Starting run at 05:28:01 UTC on 2023-07-10. Successfully read inputs file ... Castro git describe: 23.07-12-gee0f06585 AMReX git describe: 23.07-13-gb41f85ab3 Microphysics git describe: 23.07-19-g4bea489a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015614915 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357523592 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343599112 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33630648 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338224953 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367532536 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352087903 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314744342 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313743142 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312864627 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313333573 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010477821 seconds Ending run at 05:28:05 UTC on 2023-07-10. Run time = 3.553669988 Run time without initialization = 3.368124915 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.552 ... 3.553 ... 3.554 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3159 2.3680 2.3965 67.44% Gravity::make_radial_gravity() 21 0.3162 0.3247 0.3398 9.56% Castro::initData() 1 0.03918 0.07843 0.1166 3.28% check_for_negative_density() 10 0.02108 0.05053 0.1062 2.99% Castro::estTimeStep() 21 0.0263 0.07776 0.1033 2.91% FabArray::ParallelCopy_finish() 41 0.03898 0.0658 0.09201 2.59% FabArray::setVal() 143 0.06384 0.07475 0.09076 2.55% amrex::Copy() 193 0.06544 0.07911 0.09011 2.54% Castro::reset_internal_energy(Fab) 1008 0.04823 0.04956 0.05085 1.43% FabArray::ParallelCopy_nowait() 41 0.03569 0.04239 0.04475 1.26% Castro::normalize_species() 62 0.04124 0.04227 0.04389 1.24% FillPatchIterator::Initialize 41 0.02934 0.03565 0.04034 1.14% StateData::FillBoundary(geom) 41 0.03395 0.03746 0.04032 1.13% Gravity::interpolate_monopole_grav() 21 0.02851 0.02934 0.03176 0.89% Castro::construct_new_gravity_source() 10 0.02222 0.02585 0.03096 0.87% Castro::initialize_do_advance() 10 0.01196 0.01875 0.02338 0.66% Castro::computeTemp() 63 0.01826 0.01973 0.02078 0.58% VisMF::Write(FabArray) 2 0.01354 0.01408 0.01668 0.47% Castro::initialize_advance() 10 0.008633 0.0116 0.01527 0.43% FabArray::Saxpy() 20 0.01091 0.0133 0.01454 0.41% FabArray::setDomainBndry() 41 0.008712 0.0116 0.01285 0.36% MultiFab::contains_nan() 20 0.01058 0.01143 0.0124 0.35% Amr::writePlotFile() 2 0.006829 0.009699 0.01093 0.31% Castro::construct_old_gravity_source() 10 0.007087 0.009643 0.01039 0.29% Castro::initMFs() 1 0.007169 0.007466 0.009314 0.26% main() 1 0.005385 0.006359 0.006977 0.20% StateData::define() 4 0.005878 0.006006 0.006737 0.19% Castro::construct_new_source() 50 0.005846 0.006239 0.006431 0.18% Castro::enforce_min_density() 62 0.005652 0.005963 0.006267 0.18% Castro::swap_state_time_levels() 10 0.003388 0.004471 0.004824 0.14% Gravity::get_new_grav_vector() 11 0.002982 0.003655 0.004097 0.12% Amr::coarseTimeStep() 10 0.001243 0.002293 0.003261 0.09% Gravity::get_old_grav_vector() 10 0.001487 0.002017 0.002521 0.07% Castro::buildMetrics() 1 0.001658 0.001703 0.001934 0.05% Castro::finalize_do_advance() 10 0.0008138 0.00149 0.00173 0.05% AmrLevel::FillPatch() 41 0.0009499 0.001185 0.001492 0.04% Amr::timeStep() 10 0.0001876 0.0002519 0.0004445 0.01% Amr::InitAmr() 1 0.0002748 0.0003087 0.0004044 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002896 0.0003062 0.0003278 0.01% Castro::do_advance_ctu() 10 0.0001659 0.0001828 0.0002182 0.01% Castro::clean_state() 62 0.0001347 0.0001565 0.0002069 0.01% StateDataPhysBCFunct::() 41 9.217e-05 0.0001316 0.0001627 0.00% DistributionMapping::LeastUsedCPUs() 1 1.115e-05 0.0001069 0.000143 0.00% Castro::finalize_advance() 10 9.801e-05 0.0001111 0.0001302 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001084 0.0001142 0.0001294 0.00% Castro::Castro() 1 5.814e-05 8.223e-05 0.0001107 0.00% Castro::do_old_sources() 10 7.828e-05 9.361e-05 0.0001017 0.00% Castro::advance() 10 4.402e-05 5.366e-05 9.656e-05 0.00% FabArray::ParallelCopy() 41 6.567e-05 8.061e-05 9.601e-05 0.00% Castro::enforce_consistent_e() 1 7.852e-05 8.684e-05 9.493e-05 0.00% FillPatchSingleLevel 41 6.377e-05 7.263e-05 8.283e-05 0.00% Castro::do_new_sources() 10 6.027e-05 7.112e-05 8.088e-05 0.00% Castro::construct_old_source() 50 4.701e-05 6.695e-05 7.548e-05 0.00% Amr::FinalizeInit() 1 4.466e-06 1.471e-05 7.112e-05 0.00% FabArrayBase::getCPC() 41 4.542e-05 5.487e-05 7.06e-05 0.00% Amr::writeSmallPlotFile() 1 2.591e-05 5.294e-05 6.487e-05 0.00% Castro::construct_old_gravity() 10 4.33e-05 4.737e-05 5.491e-05 0.00% Castro::subcycle_advance_ctu() 10 4.442e-05 5.114e-05 5.429e-05 0.00% Castro::construct_new_gravity() 10 3.86e-05 4.242e-05 5.129e-05 0.00% Castro::apply_source_to_state() 20 3.857e-05 4.56e-05 5.055e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 3.101e-05 4.851e-05 0.00% Castro::expand_state() 10 2.349e-05 2.673e-05 3.239e-05 0.00% Amr::defBaseLevel() 1 2.463e-05 2.812e-05 3.145e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.695e-05 2.21e-05 3.083e-05 0.00% FabArrayBase::CPC::define() 2 2.247e-05 2.543e-05 2.995e-05 0.00% Castro::check_for_nan() 20 2.196e-05 2.301e-05 2.659e-05 0.00% Gravity::swapTimeLevels() 10 1.163e-05 1.452e-05 1.712e-05 0.00% Castro::post_timestep() 10 1.249e-05 1.451e-05 1.654e-05 0.00% Castro::computeNewDt() 9 9.734e-06 1.128e-05 1.279e-05 0.00% Gravity::set_mass_offset() 10 1.034e-05 1.113e-05 1.236e-05 0.00% Amr::initSubcycle() 1 8.964e-06 9.503e-06 1.051e-05 0.00% Castro::FluxRegCrseInit 10 5.727e-06 7.826e-06 9.837e-06 0.00% Castro::create_source_corrector() 10 7.211e-06 8.181e-06 9.695e-06 0.00% Amr::initialInit() 1 1.135e-06 2.811e-06 9.168e-06 0.00% Castro::retry_advance_ctu() 10 6.611e-06 7.788e-06 8.802e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.786e-06 5.604e-06 7.166e-06 0.00% Castro::computeInitialDt() 2 4.047e-06 4.638e-06 5.163e-06 0.00% Amr::InitializeInit() 1 2.053e-06 2.534e-06 4.703e-06 0.00% Castro::post_init() 1 2.7e-06 3.843e-06 4.607e-06 0.00% Castro::post_regrid() 1 1.936e-06 3.16e-06 4.037e-06 0.00% Amr::init() 1 1.727e-06 2.278e-06 2.728e-06 0.00% Castro::FluxRegFineAdd() 10 1.962e-06 2.304e-06 2.496e-06 0.00% DistributionMapping::Distribute() 1 8.78e-07 1.293e-06 2.041e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.553 3.554 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 94.29% Amr::timeStep() 10 3.338 3.339 3.34 93.98% Castro::advance() 10 3.322 3.323 3.324 93.53% Castro::subcycle_advance_ctu() 10 3.231 3.242 3.25 91.46% Castro::do_advance_ctu() 10 3.231 3.242 3.25 91.46% Castro::construct_ctu_hydro_source() 10 2.435 2.44 2.443 68.76% Gravity::make_radial_gravity() 21 0.3327 0.3417 0.354 9.96% AmrLevel::FillPatch() 41 0.2018 0.2251 0.2394 6.74% Gravity::get_new_grav_vector() 11 0.2288 0.2308 0.2354 6.62% Castro::construct_old_gravity() 10 0.1964 0.2014 0.2113 5.95% Gravity::get_old_grav_vector() 10 0.1951 0.2006 0.2107 5.93% Castro::construct_new_gravity() 10 0.2034 0.205 0.21 5.91% FillPatchIterator::Initialize 41 0.1728 0.1934 0.2054 5.78% Castro::initialize_do_advance() 10 0.1712 0.1856 0.1963 5.52% Amr::init() 1 0.185 0.1851 0.1851 5.21% Amr::initialInit() 1 0.169 0.1692 0.1693 4.76% FillPatchIterator::FillFromLevel0() 41 0.123 0.1461 0.1634 4.60% FillPatchSingleLevel 41 0.1229 0.146 0.1632 4.59% Castro::expand_state() 10 0.113 0.1297 0.1418 3.99% Amr::InitializeInit() 1 0.06109 0.1006 0.1398 3.93% Amr::defBaseLevel() 1 0.06109 0.1006 0.1398 3.93% FabArray::ParallelCopy() 41 0.08241 0.1083 0.1279 3.60% Castro::clean_state() 62 0.1136 0.1171 0.1203 3.38% Castro::initData() 1 0.04335 0.08247 0.1201 3.38% Amr::FinalizeInit() 1 0.02939 0.06857 0.108 3.04% check_for_negative_density() 10 0.02108 0.05053 0.1062 2.99% Castro::estTimeStep() 21 0.0263 0.07776 0.1033 2.91% Castro::do_old_sources() 10 0.09122 0.09598 0.09922 2.79% FabArray::ParallelCopy_finish() 41 0.03898 0.0658 0.09201 2.59% FabArray::setVal() 143 0.06384 0.07475 0.09076 2.55% amrex::Copy() 193 0.06544 0.07911 0.09011 2.54% Castro::initialize_advance() 10 0.06878 0.07675 0.08808 2.48% Castro::do_new_sources() 10 0.05954 0.0685 0.08172 2.30% Castro::computeInitialDt() 2 0.002048 0.04125 0.08066 2.27% Castro::computeTemp() 63 0.06677 0.06959 0.07121 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04852 0.04986 0.05117 1.44% Castro::reset_internal_energy(Fab) 1008 0.04823 0.04956 0.05085 1.43% FabArray::ParallelCopy_nowait() 41 0.03579 0.04247 0.04483 1.26% Castro::normalize_species() 62 0.04124 0.04227 0.04389 1.24% StateDataPhysBCFunct::() 41 0.03408 0.03759 0.04041 1.14% StateData::FillBoundary(geom) 41 0.03395 0.03746 0.04032 1.13% Castro::finalize_do_advance() 10 0.01192 0.0296 0.03965 1.12% Castro::construct_new_source() 50 0.02834 0.03209 0.03739 1.05% Gravity::interpolate_monopole_grav() 21 0.02851 0.02934 0.03176 0.89% Castro::construct_new_gravity_source() 10 0.02222 0.02585 0.03096 0.87% Castro::post_init() 1 0.02651 0.0267 0.0268 0.75% Amr::writePlotFile() 2 0.02632 0.02649 0.02667 0.75% VisMF::Write(FabArray) 2 0.01354 0.01408 0.01668 0.47% Castro::post_timestep() 10 0.01556 0.0159 0.01615 0.45% Castro::apply_source_to_state() 20 0.01096 0.01334 0.01458 0.41% FabArray::Saxpy() 20 0.01091 0.0133 0.01454 0.41% FabArray::setDomainBndry() 41 0.008712 0.0116 0.01285 0.36% Castro::Castro() 1 0.01173 0.01195 0.01279 0.36% Castro::check_for_nan() 20 0.0106 0.01145 0.01243 0.35% MultiFab::contains_nan() 20 0.01058 0.01143 0.0124 0.35% Castro::construct_old_source() 50 0.007134 0.00971 0.01047 0.29% Castro::construct_old_gravity_source() 10 0.007087 0.009643 0.01039 0.29% Castro::initMFs() 1 0.007169 0.007466 0.009314 0.26% Castro::computeNewDt() 9 0.008407 0.008419 0.008433 0.24% AmrLevel::AmrLevel(dm) 1 0.005898 0.006028 0.00676 0.19% StateData::define() 4 0.005878 0.006006 0.006737 0.19% Castro::enforce_min_density() 62 0.005652 0.005963 0.006267 0.18% Castro::swap_state_time_levels() 10 0.003388 0.004471 0.004824 0.14% Castro::finalize_advance() 10 0.003044 0.003861 0.00468 0.13% Castro::buildMetrics() 1 0.001784 0.00184 0.002094 0.06% Castro::post_regrid() 1 0.001605 0.001681 0.001732 0.05% Amr::InitAmr() 1 0.000284 0.0003182 0.0004135 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.768e-05 0.0001138 0.0001508 0.00% DistributionMapping::LeastUsedCPUs() 1 1.115e-05 0.0001069 0.000143 0.00% FabArrayBase::getCPC() 41 6.954e-05 8.03e-05 9.811e-05 0.00% Castro::enforce_consistent_e() 1 7.852e-05 8.684e-05 9.493e-05 0.00% Amr::writeSmallPlotFile() 1 2.591e-05 5.294e-05 6.487e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 3.101e-05 4.851e-05 0.00% FabArrayBase::CPC::define() 2 2.247e-05 2.543e-05 2.995e-05 0.00% Gravity::swapTimeLevels() 10 1.163e-05 1.452e-05 1.712e-05 0.00% Gravity::set_mass_offset() 10 1.034e-05 1.113e-05 1.236e-05 0.00% Amr::initSubcycle() 1 8.964e-06 9.503e-06 1.051e-05 0.00% Castro::FluxRegCrseInit 10 5.727e-06 7.826e-06 9.837e-06 0.00% Castro::create_source_corrector() 10 7.211e-06 8.181e-06 9.695e-06 0.00% Castro::retry_advance_ctu() 10 6.611e-06 7.788e-06 8.802e-06 0.00% Castro::FluxRegFineAdd() 10 1.962e-06 2.304e-06 2.496e-06 0.00% DistributionMapping::Distribute() 1 8.78e-07 1.293e-06 2.041e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-13-gb41f85ab36ac) finalized