MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-13-gb41f85ab36ac) initialized Starting run at 05:20:49 UTC on 2023-07-11. Successfully read inputs file ... Castro git describe: 23.07-14-g10cafd240 AMReX git describe: 23.07-13-gb41f85ab3 Microphysics git describe: 23.07-21-gffe836cf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016613415 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362835614 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.383262733 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333518924 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331870335 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.364198926 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341551426 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316988068 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315630568 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317542874 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312345239 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010646897 seconds Ending run at 05:20:52 UTC on 2023-07-11. Run time = 3.606335593 Run time without initialization = 3.39701351 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.606 ... 3.606 ... 3.606 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3398 2.3834 2.4380 67.60% Gravity::make_radial_gravity() 21 0.3271 0.3402 0.3543 9.82% Castro::initData() 1 0.06521 0.08699 0.1377 3.82% check_for_negative_density() 10 0.01823 0.08003 0.1269 3.52% Castro::estTimeStep() 21 0.02099 0.08283 0.1143 3.17% FabArray::ParallelCopy_finish() 41 0.03338 0.0539 0.09053 2.51% amrex::Copy() 193 0.06391 0.07761 0.08608 2.39% FabArray::setVal() 143 0.06149 0.06863 0.08006 2.22% Castro::reset_internal_energy(Fab) 1008 0.0491 0.05054 0.05322 1.48% Castro::normalize_species() 62 0.04083 0.04193 0.04367 1.21% FabArray::ParallelCopy_nowait() 41 0.03599 0.04156 0.04299 1.19% StateData::FillBoundary(geom) 41 0.03387 0.03793 0.04252 1.18% FillPatchIterator::Initialize 41 0.02931 0.03406 0.03681 1.02% Gravity::interpolate_monopole_grav() 21 0.02832 0.02877 0.02948 0.82% Castro::construct_new_gravity_source() 10 0.02255 0.02467 0.02784 0.77% Castro::initialize_do_advance() 10 0.01293 0.01886 0.02202 0.61% Castro::computeTemp() 63 0.01833 0.01999 0.02148 0.60% VisMF::Write(FabArray) 2 0.01385 0.01461 0.01761 0.49% Castro::initialize_advance() 10 0.004072 0.01034 0.01421 0.39% FabArray::Saxpy() 20 0.01083 0.01267 0.01364 0.38% FabArray::setDomainBndry() 41 0.008518 0.01162 0.01314 0.36% MultiFab::contains_nan() 20 0.01104 0.01179 0.01298 0.36% Amr::writePlotFile() 2 0.007228 0.01017 0.01138 0.32% Castro::initMFs() 1 0.007009 0.008187 0.0108 0.30% Castro::construct_old_gravity_source() 10 0.007258 0.009713 0.01058 0.29% StateData::define() 4 0.005799 0.0066 0.008512 0.24% Castro::construct_new_source() 50 0.005952 0.00621 0.006481 0.18% Gravity::get_new_grav_vector() 11 0.003218 0.004181 0.006195 0.17% Castro::enforce_min_density() 62 0.005714 0.006055 0.006192 0.17% main() 1 0.005097 0.005533 0.005876 0.16% Castro::swap_state_time_levels() 10 0.003377 0.004603 0.005419 0.15% Amr::coarseTimeStep() 10 0.001737 0.002315 0.003095 0.09% Gravity::get_old_grav_vector() 10 0.001565 0.002068 0.002546 0.07% Castro::buildMetrics() 1 0.001638 0.001885 0.002468 0.07% Castro::finalize_do_advance() 10 0.0006541 0.001622 0.001905 0.05% AmrLevel::FillPatch() 41 0.000829 0.0009447 0.001029 0.03% Amr::InitAmr() 1 0.0002723 0.0003511 0.0006391 0.02% Amr::timeStep() 10 0.0001785 0.0002477 0.0005109 0.01% DistributionMapping::LeastUsedCPUs() 1 7.201e-06 0.0003139 0.0003945 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002898 0.0003088 0.0003332 0.01% Castro::do_advance_ctu() 10 0.0001468 0.0001698 0.0001915 0.01% Castro::clean_state() 62 0.0001411 0.00015 0.0001633 0.00% Castro::enforce_consistent_e() 1 7.951e-05 0.0001062 0.0001508 0.00% StateDataPhysBCFunct::() 41 8.754e-05 0.000107 0.0001298 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001002 0.0001108 0.0001286 0.00% Castro::finalize_advance() 10 9.733e-05 0.0001062 0.0001197 0.00% Castro::do_old_sources() 10 7.804e-05 9.344e-05 0.0001075 0.00% FabArray::ParallelCopy() 41 6.744e-05 7.947e-05 9.559e-05 0.00% FillPatchSingleLevel 41 6.488e-05 7.292e-05 8.137e-05 0.00% Castro::Castro() 1 5.52e-05 7.18e-05 7.971e-05 0.00% FabArrayBase::getCPC() 41 4.415e-05 5.693e-05 7.804e-05 0.00% Castro::construct_old_source() 50 5.89e-05 6.704e-05 7.53e-05 0.00% Amr::FinalizeInit() 1 4.553e-06 1.418e-05 7.129e-05 0.00% Castro::construct_old_gravity() 10 4.074e-05 5.041e-05 6.922e-05 0.00% Castro::do_new_sources() 10 5.255e-05 6.221e-05 6.918e-05 0.00% Amr::defBaseLevel() 1 3.289e-05 4.733e-05 6.821e-05 0.00% Castro::advance() 10 3.947e-05 4.853e-05 6.26e-05 0.00% Castro::subcycle_advance_ctu() 10 4.371e-05 5.354e-05 6.209e-05 0.00% Amr::writeSmallPlotFile() 1 2.979e-05 5.33e-05 6.193e-05 0.00% Castro::construct_new_gravity() 10 3.513e-05 4.198e-05 5.427e-05 0.00% Castro::apply_source_to_state() 20 3.52e-05 4.42e-05 5.073e-05 0.00% Castro::enforce_speed_limit() 62 2.553e-05 3.153e-05 4.636e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.277e-05 2.095e-05 3.478e-05 0.00% Castro::expand_state() 10 2.185e-05 2.494e-05 3.451e-05 0.00% FabArrayBase::CPC::define() 2 2.245e-05 2.65e-05 3.124e-05 0.00% Castro::check_for_nan() 20 2.083e-05 2.379e-05 2.652e-05 0.00% Gravity::swapTimeLevels() 10 1.174e-05 1.417e-05 1.976e-05 0.00% Amr::initSubcycle() 1 8.844e-06 1.115e-05 1.612e-05 0.00% Castro::post_timestep() 10 1.262e-05 1.367e-05 1.544e-05 0.00% Gravity::set_mass_offset() 10 9.951e-06 1.19e-05 1.42e-05 0.00% Castro::computeNewDt() 9 9.165e-06 1.072e-05 1.176e-05 0.00% Castro::create_source_corrector() 10 6.956e-06 8.425e-06 1.147e-05 0.00% Castro::FluxRegCrseInit 10 6.268e-06 7.435e-06 9.255e-06 0.00% Castro::retry_advance_ctu() 10 7.425e-06 7.882e-06 8.354e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.916e-06 5.188e-06 6.782e-06 0.00% Amr::InitializeInit() 1 2.021e-06 2.884e-06 6.415e-06 0.00% Castro::post_regrid() 1 2.066e-06 3.552e-06 6.155e-06 0.00% Castro::computeInitialDt() 2 3.609e-06 4.609e-06 5.364e-06 0.00% Castro::post_init() 1 3.131e-06 4.106e-06 5.154e-06 0.00% Amr::init() 1 1.714e-06 2.46e-06 2.983e-06 0.00% Castro::FluxRegFineAdd() 10 2.008e-06 2.33e-06 2.618e-06 0.00% Amr::initialInit() 1 1.422e-06 1.839e-06 2.237e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.167e-06 1.424e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.606 3.606 3.606 100.00% Amr::coarseTimeStep() 10 3.381 3.381 3.381 93.74% Amr::timeStep() 10 3.368 3.368 3.369 93.42% Castro::advance() 10 3.352 3.352 3.353 92.97% Castro::subcycle_advance_ctu() 10 3.269 3.278 3.288 91.18% Castro::do_advance_ctu() 10 3.269 3.277 3.288 91.18% Castro::construct_ctu_hydro_source() 10 2.48 2.486 2.49 69.05% Gravity::make_radial_gravity() 21 0.3422 0.3566 0.3677 10.20% Gravity::get_new_grav_vector() 11 0.2392 0.2409 0.2432 6.74% AmrLevel::FillPatch() 41 0.194 0.2104 0.2229 6.18% Castro::construct_new_gravity() 10 0.2125 0.2135 0.2146 5.95% Castro::construct_old_gravity() 10 0.1929 0.2013 0.2119 5.88% Gravity::get_old_grav_vector() 10 0.1922 0.2006 0.2113 5.86% Amr::init() 1 0.2085 0.2088 0.2089 5.79% FillPatchIterator::Initialize 41 0.1643 0.1795 0.1988 5.51% Amr::initialInit() 1 0.1917 0.1922 0.1927 5.34% Castro::initialize_do_advance() 10 0.1684 0.1773 0.1835 5.09% FillPatchIterator::FillFromLevel0() 41 0.115 0.1338 0.1609 4.46% Amr::InitializeInit() 1 0.08627 0.1104 0.1609 4.46% Amr::defBaseLevel() 1 0.08627 0.1104 0.1609 4.46% FillPatchSingleLevel 41 0.1149 0.1337 0.1608 4.46% Castro::initData() 1 0.06909 0.09129 0.1419 3.93% Castro::expand_state() 10 0.1095 0.1209 0.1285 3.56% check_for_negative_density() 10 0.01823 0.08003 0.1269 3.52% FabArray::ParallelCopy() 41 0.07591 0.09562 0.1267 3.51% Castro::clean_state() 62 0.1139 0.1179 0.1226 3.40% Castro::estTimeStep() 21 0.02099 0.08283 0.1143 3.17% Amr::FinalizeInit() 1 0.03188 0.0818 0.1063 2.95% Castro::do_old_sources() 10 0.09131 0.09511 0.09869 2.74% FabArray::ParallelCopy_finish() 41 0.03338 0.0539 0.09053 2.51% amrex::Copy() 193 0.06391 0.07761 0.08608 2.39% FabArray::setVal() 143 0.06149 0.06863 0.08006 2.22% Castro::initialize_advance() 10 0.05937 0.07102 0.07937 2.20% Castro::computeInitialDt() 2 0.002352 0.05272 0.07696 2.13% Castro::do_new_sources() 10 0.05876 0.06564 0.07562 2.10% Castro::computeTemp() 63 0.06783 0.07084 0.07502 2.08% Castro::reset_internal_energy(MultiFab) 63 0.04941 0.05085 0.05355 1.48% Castro::reset_internal_energy(Fab) 1008 0.0491 0.05054 0.05322 1.48% Castro::normalize_species() 62 0.04083 0.04193 0.04367 1.21% FabArray::ParallelCopy_nowait() 41 0.03609 0.04164 0.04307 1.19% StateDataPhysBCFunct::() 41 0.03399 0.03804 0.04265 1.18% StateData::FillBoundary(geom) 41 0.03387 0.03793 0.04252 1.18% Castro::construct_new_source() 50 0.02869 0.03088 0.03413 0.95% Castro::finalize_do_advance() 10 0.01178 0.02305 0.03132 0.87% Gravity::interpolate_monopole_grav() 21 0.02832 0.02877 0.02948 0.82% Castro::post_init() 1 0.02787 0.02856 0.02901 0.80% Amr::writePlotFile() 2 0.02688 0.02731 0.02787 0.77% Castro::construct_new_gravity_source() 10 0.02255 0.02467 0.02784 0.77% VisMF::Write(FabArray) 2 0.01385 0.01461 0.01761 0.49% Castro::post_timestep() 10 0.01567 0.01602 0.01661 0.46% Castro::Castro() 1 0.01091 0.01215 0.01508 0.42% Castro::apply_source_to_state() 20 0.01088 0.01271 0.01369 0.38% FabArray::Saxpy() 20 0.01083 0.01267 0.01364 0.38% FabArray::setDomainBndry() 41 0.008518 0.01162 0.01314 0.36% Castro::check_for_nan() 20 0.01106 0.01181 0.01301 0.36% MultiFab::contains_nan() 20 0.01104 0.01179 0.01298 0.36% Castro::initMFs() 1 0.007009 0.008187 0.0108 0.30% Castro::construct_old_source() 50 0.007318 0.00978 0.01065 0.30% Castro::construct_old_gravity_source() 10 0.007258 0.009713 0.01058 0.29% Castro::computeNewDt() 9 0.008685 0.008695 0.008705 0.24% AmrLevel::AmrLevel(dm) 1 0.005812 0.006621 0.008546 0.24% StateData::define() 4 0.005799 0.0066 0.008512 0.24% Castro::enforce_min_density() 62 0.005714 0.006055 0.006192 0.17% Castro::swap_state_time_levels() 10 0.003377 0.004603 0.005419 0.15% Castro::finalize_advance() 10 0.003023 0.003478 0.003967 0.11% Castro::buildMetrics() 1 0.001749 0.002028 0.002679 0.07% Castro::post_regrid() 1 0.001556 0.001716 0.001962 0.05% Amr::InitAmr() 1 0.0002818 0.0003622 0.000655 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.233e-05 0.0003202 0.000402 0.01% DistributionMapping::LeastUsedCPUs() 1 7.201e-06 0.0003139 0.0003945 0.01% Castro::enforce_consistent_e() 1 7.951e-05 0.0001062 0.0001508 0.00% FabArrayBase::getCPC() 41 7.539e-05 8.343e-05 0.0001043 0.00% Amr::writeSmallPlotFile() 1 2.979e-05 5.33e-05 6.193e-05 0.00% Castro::enforce_speed_limit() 62 2.553e-05 3.153e-05 4.636e-05 0.00% FabArrayBase::CPC::define() 2 2.245e-05 2.65e-05 3.124e-05 0.00% Gravity::swapTimeLevels() 10 1.174e-05 1.417e-05 1.976e-05 0.00% Amr::initSubcycle() 1 8.844e-06 1.115e-05 1.612e-05 0.00% Gravity::set_mass_offset() 10 9.951e-06 1.19e-05 1.42e-05 0.00% Castro::create_source_corrector() 10 6.956e-06 8.425e-06 1.147e-05 0.00% Castro::FluxRegCrseInit 10 6.268e-06 7.435e-06 9.255e-06 0.00% Castro::retry_advance_ctu() 10 7.425e-06 7.882e-06 8.354e-06 0.00% Castro::FluxRegFineAdd() 10 2.008e-06 2.33e-06 2.618e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.167e-06 1.424e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-13-gb41f85ab36ac) finalized