MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-15-g6dfdd48dc476) initialized Starting run at 05:29:54 UTC on 2023-07-12. Successfully read inputs file ... Castro git describe: 23.07-14-g10cafd240 AMReX git describe: 23.07-15-g6dfdd48dc Microphysics git describe: 23.07-22-ga7473400 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017222793 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362004781 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.346840008 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333445668 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331048275 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365361531 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337901388 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313898005 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31329659 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313433905 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313904734 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01050967 seconds Ending run at 05:29:58 UTC on 2023-07-12. Run time = 3.584020431 Run time without initialization = 3.349324208 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.582 ... 3.583 ... 3.584 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3194 2.3668 2.3986 66.92% Gravity::make_radial_gravity() 21 0.3198 0.3301 0.3412 9.52% Castro::estTimeStep() 21 0.03419 0.1046 0.1595 4.45% Castro::initData() 1 0.04015 0.08884 0.1576 4.40% check_for_negative_density() 10 0.03283 0.0689 0.1174 3.28% FabArray::ParallelCopy_finish() 41 0.03724 0.05281 0.08911 2.49% amrex::Copy() 193 0.06278 0.07481 0.0847 2.36% FabArray::setVal() 143 0.06118 0.06846 0.08055 2.25% Castro::reset_internal_energy(Fab) 1008 0.04799 0.05016 0.05224 1.46% FabArray::ParallelCopy_nowait() 41 0.03622 0.04124 0.04337 1.21% Castro::normalize_species() 62 0.04108 0.04167 0.04244 1.18% StateData::FillBoundary(geom) 41 0.03367 0.03699 0.04099 1.14% FillPatchIterator::Initialize 41 0.02934 0.03337 0.0355 0.99% Gravity::interpolate_monopole_grav() 21 0.02822 0.02856 0.02911 0.81% Castro::construct_new_gravity_source() 10 0.02224 0.02466 0.02805 0.78% Castro::initialize_do_advance() 10 0.01227 0.01784 0.02108 0.59% Castro::computeTemp() 63 0.01901 0.01977 0.02028 0.57% VisMF::Write(FabArray) 2 0.01404 0.01495 0.01797 0.50% Castro::initialize_advance() 10 0.004109 0.01049 0.01454 0.41% FabArray::Saxpy() 20 0.01086 0.01268 0.01336 0.37% MultiFab::contains_nan() 20 0.01079 0.01141 0.01226 0.34% FabArray::setDomainBndry() 41 0.008698 0.01095 0.01206 0.34% Amr::writePlotFile() 2 0.007315 0.01017 0.01097 0.31% Castro::initMFs() 1 0.007087 0.008352 0.01038 0.29% Castro::construct_old_gravity_source() 10 0.007135 0.00959 0.01017 0.28% StateData::define() 4 0.005879 0.006932 0.008626 0.24% main() 1 0.005143 0.006126 0.006923 0.19% Castro::construct_new_source() 50 0.005657 0.006192 0.006415 0.18% Castro::enforce_min_density() 62 0.005801 0.005987 0.006238 0.17% Gravity::get_new_grav_vector() 11 0.003202 0.003884 0.006019 0.17% Castro::swap_state_time_levels() 10 0.003415 0.004604 0.005535 0.15% Amr::coarseTimeStep() 10 0.001072 0.002123 0.002774 0.08% Castro::buildMetrics() 1 0.001684 0.001989 0.002457 0.07% Gravity::get_old_grav_vector() 10 0.001571 0.001886 0.002215 0.06% Castro::finalize_do_advance() 10 0.0006775 0.001544 0.001881 0.05% AmrLevel::FillPatch() 41 0.0009666 0.001079 0.001212 0.03% Amr::InitAmr() 1 0.0002789 0.0003549 0.0004941 0.01% Amr::timeStep() 10 0.0001938 0.0002461 0.0004218 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002764 0.0002993 0.0003458 0.01% DistributionMapping::LeastUsedCPUs() 1 6.544e-06 0.0001626 0.0002406 0.01% Castro::do_advance_ctu() 10 0.0001484 0.0001675 0.0001909 0.01% Castro::clean_state() 62 0.0001256 0.0001423 0.0001518 0.00% Castro::enforce_consistent_e() 1 7.795e-05 9.743e-05 0.0001463 0.00% StateDataPhysBCFunct::() 41 8.215e-05 0.0001016 0.0001375 0.00% FillPatchIterator::FillFromLevel0() 41 8.674e-05 0.0001072 0.0001257 0.00% Castro::finalize_advance() 10 8.475e-05 0.0001026 0.0001187 0.00% Castro::do_old_sources() 10 6.999e-05 9.496e-05 0.000103 0.00% Castro::construct_old_source() 50 4.954e-05 6.904e-05 8.727e-05 0.00% FabArray::ParallelCopy() 41 6.742e-05 7.493e-05 8.463e-05 0.00% Castro::advance() 10 3.493e-05 4.909e-05 7.713e-05 0.00% Castro::Castro() 1 5.907e-05 6.744e-05 7.673e-05 0.00% FillPatchSingleLevel 41 5.472e-05 6.888e-05 7.623e-05 0.00% Amr::FinalizeInit() 1 3.983e-06 1.451e-05 7.511e-05 0.00% Castro::do_new_sources() 10 5.072e-05 6.508e-05 7.272e-05 0.00% Amr::writeSmallPlotFile() 1 2.731e-05 4.752e-05 6.696e-05 0.00% FabArrayBase::getCPC() 41 4.355e-05 5.093e-05 6.256e-05 0.00% Castro::subcycle_advance_ctu() 10 4.935e-05 5.156e-05 5.425e-05 0.00% Castro::construct_old_gravity() 10 4.131e-05 4.841e-05 5.418e-05 0.00% Castro::apply_source_to_state() 20 2.98e-05 4.225e-05 4.831e-05 0.00% Castro::construct_new_gravity() 10 3.42e-05 4.132e-05 4.82e-05 0.00% Amr::defBaseLevel() 1 2.801e-05 3.556e-05 4.329e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.416e-05 2.312e-05 3.231e-05 0.00% Castro::enforce_speed_limit() 62 2.474e-05 2.812e-05 3.064e-05 0.00% FabArrayBase::CPC::define() 2 2.086e-05 2.434e-05 2.848e-05 0.00% Castro::expand_state() 10 2.02e-05 2.367e-05 2.698e-05 0.00% Castro::check_for_nan() 20 1.904e-05 2.223e-05 2.384e-05 0.00% Castro::post_init() 1 3.114e-06 6.174e-06 2.106e-05 0.00% Castro::post_timestep() 10 1.268e-05 1.433e-05 1.817e-05 0.00% Gravity::swapTimeLevels() 10 1.14e-05 1.382e-05 1.749e-05 0.00% Amr::initSubcycle() 1 9.363e-06 1.151e-05 1.579e-05 0.00% Gravity::set_mass_offset() 10 8.856e-06 1.186e-05 1.541e-05 0.00% Castro::computeNewDt() 9 7.907e-06 9.62e-06 1.15e-05 0.00% Castro::retry_advance_ctu() 10 6.753e-06 7.706e-06 9.552e-06 0.00% Castro::create_source_corrector() 10 7.019e-06 8.254e-06 9.204e-06 0.00% Castro::FluxRegCrseInit 10 5.624e-06 6.952e-06 8.855e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.725e-06 4.858e-06 6.983e-06 0.00% Castro::computeInitialDt() 2 3.741e-06 4.694e-06 6.53e-06 0.00% Amr::InitializeInit() 1 2.061e-06 2.781e-06 5.358e-06 0.00% Castro::post_regrid() 1 2.112e-06 3.109e-06 4.43e-06 0.00% Amr::init() 1 2.17e-06 2.477e-06 3.086e-06 0.00% Castro::FluxRegFineAdd() 10 1.94e-06 2.188e-06 2.405e-06 0.00% Amr::initialInit() 1 1.429e-06 1.809e-06 2.117e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.238e-06 1.447e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.582 3.583 3.584 100.00% Amr::coarseTimeStep() 10 3.332 3.332 3.332 92.97% Amr::timeStep() 10 3.32 3.32 3.321 92.67% Castro::advance() 10 3.304 3.304 3.305 92.21% Castro::subcycle_advance_ctu() 10 3.221 3.23 3.241 90.43% Castro::do_advance_ctu() 10 3.221 3.23 3.241 90.43% Castro::construct_ctu_hydro_source() 10 2.454 2.458 2.461 68.65% Gravity::make_radial_gravity() 21 0.3356 0.3457 0.3556 9.92% Amr::init() 1 0.234 0.2342 0.2343 6.54% Gravity::get_new_grav_vector() 11 0.2264 0.2287 0.2306 6.44% AmrLevel::FillPatch() 41 0.1784 0.205 0.2213 6.17% Amr::initialInit() 1 0.2167 0.217 0.2176 6.07% Castro::construct_old_gravity() 10 0.194 0.1998 0.2105 5.87% Gravity::get_old_grav_vector() 10 0.1935 0.1993 0.2099 5.86% Castro::construct_new_gravity() 10 0.1995 0.2013 0.2023 5.65% FillPatchIterator::Initialize 41 0.1529 0.1758 0.1975 5.51% Amr::InitializeInit() 1 0.06087 0.1121 0.1855 5.18% Amr::defBaseLevel() 1 0.06087 0.1121 0.1855 5.18% Castro::initialize_do_advance() 10 0.1586 0.1745 0.1826 5.09% Castro::initData() 1 0.04382 0.09287 0.1621 4.52% FillPatchIterator::FillFromLevel0() 41 0.1131 0.1315 0.1595 4.45% Castro::estTimeStep() 21 0.03419 0.1046 0.1595 4.45% FillPatchSingleLevel 41 0.113 0.1314 0.1594 4.45% Amr::FinalizeInit() 1 0.0313 0.1049 0.1559 4.35% Castro::expand_state() 10 0.1003 0.1196 0.1306 3.65% Castro::computeInitialDt() 2 0.002344 0.07585 0.127 3.54% FabArray::ParallelCopy() 41 0.07901 0.0942 0.1255 3.50% Castro::clean_state() 62 0.1138 0.117 0.1201 3.35% check_for_negative_density() 10 0.03283 0.0689 0.1174 3.28% Castro::do_old_sources() 10 0.08835 0.09251 0.09644 2.69% FabArray::ParallelCopy_finish() 41 0.03724 0.05281 0.08911 2.49% amrex::Copy() 193 0.06278 0.07481 0.0847 2.36% FabArray::setVal() 143 0.06118 0.06846 0.08055 2.25% Castro::initialize_advance() 10 0.05865 0.07104 0.07976 2.23% Castro::do_new_sources() 10 0.05937 0.0661 0.07584 2.12% Castro::computeTemp() 63 0.06729 0.07023 0.07264 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04828 0.05046 0.05256 1.47% Castro::reset_internal_energy(Fab) 1008 0.04799 0.05016 0.05224 1.46% FabArray::ParallelCopy_nowait() 41 0.03631 0.04131 0.04345 1.21% Castro::normalize_species() 62 0.04108 0.04167 0.04244 1.18% StateDataPhysBCFunct::() 41 0.03381 0.0371 0.04108 1.15% StateData::FillBoundary(geom) 41 0.03367 0.03699 0.04099 1.14% Castro::construct_new_source() 50 0.02835 0.03085 0.03442 0.96% Gravity::interpolate_monopole_grav() 21 0.02822 0.02856 0.02911 0.81% Castro::finalize_do_advance() 10 0.01135 0.02193 0.0291 0.81% Castro::post_init() 1 0.02833 0.0286 0.02897 0.81% Castro::construct_new_gravity_source() 10 0.02224 0.02466 0.02805 0.78% Amr::writePlotFile() 2 0.02723 0.02773 0.02804 0.78% VisMF::Write(FabArray) 2 0.01404 0.01495 0.01797 0.50% Castro::post_timestep() 10 0.01544 0.01587 0.01636 0.46% Castro::Castro() 1 0.0104 0.01211 0.01469 0.41% Castro::apply_source_to_state() 20 0.0109 0.01272 0.0134 0.37% FabArray::Saxpy() 20 0.01086 0.01268 0.01336 0.37% Castro::check_for_nan() 20 0.01081 0.01143 0.01228 0.34% MultiFab::contains_nan() 20 0.01079 0.01141 0.01226 0.34% FabArray::setDomainBndry() 41 0.008698 0.01095 0.01206 0.34% Castro::initMFs() 1 0.007087 0.008352 0.01038 0.29% Castro::construct_old_source() 50 0.007191 0.009659 0.01025 0.29% Castro::construct_old_gravity_source() 10 0.007135 0.00959 0.01017 0.28% AmrLevel::AmrLevel(dm) 1 0.005904 0.006955 0.008648 0.24% StateData::define() 4 0.005879 0.006932 0.008626 0.24% Castro::computeNewDt() 9 0.008343 0.008348 0.008355 0.23% Castro::enforce_min_density() 62 0.005801 0.005987 0.006238 0.17% Castro::swap_state_time_levels() 10 0.003415 0.004604 0.005535 0.15% Castro::finalize_advance() 10 0.003029 0.003538 0.00402 0.11% Castro::buildMetrics() 1 0.001798 0.002136 0.002673 0.07% Castro::post_regrid() 1 0.001509 0.001633 0.001953 0.05% Amr::InitAmr() 1 0.0002891 0.0003664 0.0005099 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.213e-05 0.0001687 0.0002489 0.01% DistributionMapping::LeastUsedCPUs() 1 6.544e-06 0.0001626 0.0002406 0.01% Castro::enforce_consistent_e() 1 7.795e-05 9.743e-05 0.0001463 0.00% FabArrayBase::getCPC() 41 6.847e-05 7.527e-05 8.82e-05 0.00% Amr::writeSmallPlotFile() 1 2.731e-05 4.752e-05 6.696e-05 0.00% Castro::enforce_speed_limit() 62 2.474e-05 2.812e-05 3.064e-05 0.00% FabArrayBase::CPC::define() 2 2.086e-05 2.434e-05 2.848e-05 0.00% Gravity::swapTimeLevels() 10 1.14e-05 1.382e-05 1.749e-05 0.00% Amr::initSubcycle() 1 9.363e-06 1.151e-05 1.579e-05 0.00% Gravity::set_mass_offset() 10 8.856e-06 1.186e-05 1.541e-05 0.00% Castro::retry_advance_ctu() 10 6.753e-06 7.706e-06 9.552e-06 0.00% Castro::create_source_corrector() 10 7.019e-06 8.254e-06 9.204e-06 0.00% Castro::FluxRegCrseInit 10 5.624e-06 6.952e-06 8.855e-06 0.00% Castro::FluxRegFineAdd() 10 1.94e-06 2.188e-06 2.405e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.238e-06 1.447e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-15-g6dfdd48dc476) finalized