MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-17-g5117d21af790) initialized Starting run at 05:35:27 UTC on 2023-07-13. Successfully read inputs file ... Castro git describe: 23.07-14-g10cafd240 AMReX git describe: 23.07-17-g5117d21af Microphysics git describe: 23.07-25-ge5c0f75c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015668397 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372584798 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.381476082 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341716431 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337506292 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.366116014 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339370091 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313070737 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318204085 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311926972 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312103378 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010318816 seconds Ending run at 05:35:30 UTC on 2023-07-13. Run time = 3.622769864 Run time without initialization = 3.412113827 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.621 ... 3.622 ... 3.623 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3418 2.3717 2.4097 66.51% Gravity::make_radial_gravity() 21 0.3256 0.3406 0.3489 9.63% Castro::initData() 1 0.04025 0.08274 0.1389 3.83% Castro::estTimeStep() 21 0.03615 0.09889 0.1347 3.72% check_for_negative_density() 10 0.04843 0.08844 0.1201 3.32% amrex::Copy() 193 0.06522 0.07824 0.09023 2.49% FabArray::ParallelCopy_finish() 41 0.03869 0.05884 0.08905 2.46% FabArray::setVal() 143 0.06029 0.06907 0.08197 2.26% Castro::reset_internal_energy(Fab) 1008 0.04767 0.05019 0.05225 1.44% Castro::normalize_species() 62 0.04093 0.04211 0.0444 1.23% FabArray::ParallelCopy_nowait() 41 0.03686 0.04229 0.04426 1.22% StateData::FillBoundary(geom) 41 0.03471 0.03798 0.04168 1.15% FillPatchIterator::Initialize 41 0.02964 0.03475 0.03671 1.01% Castro::construct_new_gravity_source() 10 0.02203 0.02577 0.03165 0.87% Gravity::interpolate_monopole_grav() 21 0.02839 0.02885 0.0296 0.82% Castro::initialize_do_advance() 10 0.01243 0.01834 0.02209 0.61% Castro::computeTemp() 63 0.01747 0.01962 0.02086 0.58% VisMF::Write(FabArray) 2 0.01293 0.01393 0.01656 0.46% Castro::initialize_advance() 10 0.004571 0.01055 0.0147 0.41% FabArray::setDomainBndry() 41 0.008782 0.01178 0.01334 0.37% FabArray::Saxpy() 20 0.01083 0.01238 0.01311 0.36% MultiFab::contains_nan() 20 0.01093 0.01163 0.01247 0.34% Amr::writePlotFile() 2 0.006931 0.009629 0.01155 0.32% Castro::initMFs() 1 0.007124 0.008161 0.01057 0.29% Castro::construct_old_gravity_source() 10 0.007797 0.00983 0.01039 0.29% StateData::define() 4 0.005978 0.006732 0.008549 0.24% main() 1 0.004904 0.006241 0.006902 0.19% Castro::construct_new_source() 50 0.005708 0.006023 0.006462 0.18% Castro::enforce_min_density() 62 0.005563 0.006017 0.006248 0.17% Castro::swap_state_time_levels() 10 0.00343 0.004512 0.004872 0.13% Amr::coarseTimeStep() 10 0.002051 0.00337 0.004788 0.13% Gravity::get_new_grav_vector() 11 0.002918 0.003702 0.004674 0.13% Castro::buildMetrics() 1 0.001712 0.001934 0.002453 0.07% Gravity::get_old_grav_vector() 10 0.001613 0.002012 0.002429 0.07% Castro::finalize_do_advance() 10 0.0006515 0.00148 0.001779 0.05% AmrLevel::FillPatch() 41 0.0008628 0.001015 0.001292 0.04% Amr::timeStep() 10 0.0001712 0.0002423 0.0005129 0.01% Amr::InitAmr() 1 0.0002742 0.0003498 0.0004996 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002841 0.0003103 0.0003599 0.01% DistributionMapping::LeastUsedCPUs() 1 6.935e-06 0.0001788 0.000257 0.01% Castro::do_advance_ctu() 10 0.0001461 0.0001707 0.0001862 0.01% Castro::clean_state() 62 0.0001383 0.000149 0.0001581 0.00% StateDataPhysBCFunct::() 41 9.33e-05 0.000112 0.0001393 0.00% Castro::enforce_consistent_e() 1 7.762e-05 8.959e-05 0.0001221 0.00% FillPatchIterator::FillFromLevel0() 41 9.873e-05 0.0001111 0.0001189 0.00% Castro::finalize_advance() 10 8.909e-05 0.000101 0.0001128 0.00% Castro::do_old_sources() 10 8.234e-05 9.854e-05 0.0001086 0.00% Castro::construct_new_gravity() 10 3.289e-05 4.852e-05 9.516e-05 0.00% FabArray::ParallelCopy() 41 6.698e-05 7.574e-05 9.483e-05 0.00% Castro::construct_old_source() 50 5.246e-05 7.388e-05 8.662e-05 0.00% Amr::FinalizeInit() 1 3.865e-06 1.693e-05 8.497e-05 0.00% FillPatchSingleLevel 41 6.622e-05 7.3e-05 8.418e-05 0.00% Castro::Castro() 1 5.955e-05 7.078e-05 8.302e-05 0.00% Amr::writeSmallPlotFile() 1 2.973e-05 5.31e-05 7.003e-05 0.00% Castro::do_new_sources() 10 5.383e-05 6.304e-05 6.993e-05 0.00% FabArrayBase::getCPC() 41 4.771e-05 5.214e-05 6.268e-05 0.00% Castro::subcycle_advance_ctu() 10 4.141e-05 5.175e-05 6.254e-05 0.00% Castro::construct_old_gravity() 10 4.027e-05 4.932e-05 6.09e-05 0.00% Castro::apply_source_to_state() 20 3.746e-05 4.306e-05 5.229e-05 0.00% Castro::advance() 10 3.953e-05 4.573e-05 4.872e-05 0.00% Amr::defBaseLevel() 1 2.855e-05 3.77e-05 4.86e-05 0.00% Castro::expand_state() 10 2.005e-05 2.681e-05 3.274e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.424e-05 2.144e-05 3.222e-05 0.00% Castro::enforce_speed_limit() 62 2.66e-05 2.808e-05 3.061e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.373e-05 2.911e-05 0.00% Castro::check_for_nan() 20 2.018e-05 2.244e-05 2.417e-05 0.00% Gravity::swapTimeLevels() 10 1.07e-05 1.36e-05 1.821e-05 0.00% Castro::post_timestep() 10 1.259e-05 1.454e-05 1.752e-05 0.00% Amr::initSubcycle() 1 8.898e-06 1.115e-05 1.664e-05 0.00% Castro::create_source_corrector() 10 7.138e-06 9.199e-06 1.432e-05 0.00% Castro::computeNewDt() 9 8.468e-06 1.043e-05 1.32e-05 0.00% Gravity::set_mass_offset() 10 9.512e-06 1.139e-05 1.315e-05 0.00% Amr::initialInit() 1 1.352e-06 2.735e-06 9.113e-06 0.00% Castro::retry_advance_ctu() 10 6.893e-06 7.789e-06 8.83e-06 0.00% Castro::post_init() 1 2.638e-06 4.396e-06 8.625e-06 0.00% Castro::FluxRegCrseInit 10 6.452e-06 7.421e-06 8.365e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.821e-06 5.035e-06 6.647e-06 0.00% Castro::computeInitialDt() 2 3.897e-06 4.452e-06 5.472e-06 0.00% Amr::InitializeInit() 1 1.847e-06 2.527e-06 5.043e-06 0.00% Castro::post_regrid() 1 1.844e-06 3.116e-06 4.653e-06 0.00% Amr::init() 1 1.928e-06 2.47e-06 3.211e-06 0.00% Castro::FluxRegFineAdd() 10 1.853e-06 2.209e-06 2.519e-06 0.00% DistributionMapping::Distribute() 1 8.98e-07 1.165e-06 1.376e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.621 3.622 3.623 100.00% Amr::coarseTimeStep() 10 3.395 3.395 3.395 93.71% Amr::timeStep() 10 3.38 3.381 3.383 93.37% Castro::advance() 10 3.365 3.365 3.366 92.90% Castro::subcycle_advance_ctu() 10 3.279 3.29 3.297 91.01% Castro::do_advance_ctu() 10 3.279 3.29 3.297 91.01% Castro::construct_ctu_hydro_source() 10 2.479 2.482 2.485 68.60% Gravity::make_radial_gravity() 21 0.3426 0.3567 0.3621 9.99% Gravity::get_new_grav_vector() 11 0.2373 0.2399 0.2424 6.69% AmrLevel::FillPatch() 41 0.1997 0.2172 0.231 6.38% Castro::construct_new_gravity() 10 0.2136 0.2156 0.2174 6.00% Amr::init() 1 0.21 0.2102 0.2102 5.80% Castro::construct_old_gravity() 10 0.1935 0.2031 0.2081 5.74% Gravity::get_old_grav_vector() 10 0.193 0.2025 0.2075 5.73% FillPatchIterator::Initialize 41 0.1669 0.1861 0.2045 5.64% Amr::initialInit() 1 0.1941 0.1943 0.1946 5.37% Castro::initialize_do_advance() 10 0.1707 0.1806 0.189 5.22% Amr::InitializeInit() 1 0.06141 0.1058 0.1662 4.59% Amr::defBaseLevel() 1 0.0614 0.1058 0.1662 4.59% FillPatchIterator::FillFromLevel0() 41 0.1187 0.1396 0.1653 4.56% FillPatchSingleLevel 41 0.1186 0.1394 0.1652 4.56% Castro::initData() 1 0.04408 0.08659 0.1428 3.94% Castro::estTimeStep() 21 0.03615 0.09889 0.1347 3.72% Castro::expand_state() 10 0.113 0.1248 0.1338 3.69% Amr::FinalizeInit() 1 0.0279 0.08858 0.1329 3.67% FabArray::ParallelCopy() 41 0.08101 0.1013 0.1261 3.48% Castro::clean_state() 62 0.112 0.1175 0.1232 3.40% check_for_negative_density() 10 0.04843 0.08844 0.1201 3.32% Castro::computeInitialDt() 2 0.001951 0.06257 0.1069 2.95% Castro::do_old_sources() 10 0.09415 0.09742 0.101 2.79% amrex::Copy() 193 0.06522 0.07824 0.09023 2.49% FabArray::ParallelCopy_finish() 41 0.03869 0.05884 0.08905 2.46% Castro::initialize_advance() 10 0.06338 0.07126 0.08207 2.27% FabArray::setVal() 143 0.06029 0.06907 0.08197 2.26% Castro::do_new_sources() 10 0.05778 0.06642 0.08007 2.21% Castro::computeTemp() 63 0.06543 0.07012 0.07347 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04796 0.0505 0.05261 1.45% Castro::reset_internal_energy(Fab) 1008 0.04767 0.05019 0.05225 1.44% Castro::normalize_species() 62 0.04093 0.04211 0.0444 1.23% FabArray::ParallelCopy_nowait() 41 0.03695 0.04236 0.04433 1.22% StateDataPhysBCFunct::() 41 0.03484 0.0381 0.04177 1.15% StateData::FillBoundary(geom) 41 0.03471 0.03798 0.04168 1.15% Castro::finalize_do_advance() 10 0.01338 0.0287 0.03869 1.07% Castro::construct_new_source() 50 0.02797 0.03179 0.03811 1.05% Castro::construct_new_gravity_source() 10 0.02203 0.02577 0.03165 0.87% Gravity::interpolate_monopole_grav() 21 0.02839 0.02885 0.0296 0.82% Amr::writePlotFile() 2 0.02603 0.02622 0.02639 0.73% Castro::post_init() 1 0.02536 0.0255 0.02566 0.71% Castro::post_timestep() 10 0.01522 0.0161 0.0174 0.48% VisMF::Write(FabArray) 2 0.01293 0.01393 0.01656 0.46% Castro::Castro() 1 0.01115 0.01219 0.01483 0.41% FabArray::setDomainBndry() 41 0.008782 0.01178 0.01334 0.37% Castro::apply_source_to_state() 20 0.01088 0.01242 0.01315 0.36% FabArray::Saxpy() 20 0.01083 0.01238 0.01311 0.36% Castro::check_for_nan() 20 0.01095 0.01166 0.01249 0.34% MultiFab::contains_nan() 20 0.01093 0.01163 0.01247 0.34% Castro::initMFs() 1 0.007124 0.008161 0.01057 0.29% Castro::construct_old_source() 50 0.00785 0.009904 0.01046 0.29% Castro::construct_old_gravity_source() 10 0.007797 0.00983 0.01039 0.29% Castro::computeNewDt() 9 0.009092 0.009117 0.009124 0.25% AmrLevel::AmrLevel(dm) 1 0.005992 0.006753 0.008575 0.24% StateData::define() 4 0.005978 0.006732 0.008549 0.24% Castro::enforce_min_density() 62 0.005563 0.006017 0.006248 0.17% Castro::swap_state_time_levels() 10 0.00343 0.004512 0.004872 0.13% Castro::finalize_advance() 10 0.002966 0.003611 0.004229 0.12% Castro::buildMetrics() 1 0.001838 0.002085 0.002662 0.07% Castro::post_regrid() 1 0.001476 0.001563 0.001646 0.05% Amr::InitAmr() 1 0.0002839 0.000361 0.0005162 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.221e-05 0.000185 0.0002649 0.01% DistributionMapping::LeastUsedCPUs() 1 6.935e-06 0.0001788 0.000257 0.01% Castro::enforce_consistent_e() 1 7.762e-05 8.959e-05 0.0001221 0.00% FabArrayBase::getCPC() 41 6.993e-05 7.587e-05 8.597e-05 0.00% Amr::writeSmallPlotFile() 1 2.973e-05 5.31e-05 7.003e-05 0.00% Castro::enforce_speed_limit() 62 2.66e-05 2.808e-05 3.061e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.373e-05 2.911e-05 0.00% Gravity::swapTimeLevels() 10 1.07e-05 1.36e-05 1.821e-05 0.00% Amr::initSubcycle() 1 8.898e-06 1.115e-05 1.664e-05 0.00% Castro::create_source_corrector() 10 7.138e-06 9.199e-06 1.432e-05 0.00% Gravity::set_mass_offset() 10 9.512e-06 1.139e-05 1.315e-05 0.00% Castro::retry_advance_ctu() 10 6.893e-06 7.789e-06 8.83e-06 0.00% Castro::FluxRegCrseInit 10 6.452e-06 7.421e-06 8.365e-06 0.00% Castro::FluxRegFineAdd() 10 1.853e-06 2.209e-06 2.519e-06 0.00% DistributionMapping::Distribute() 1 8.98e-07 1.165e-06 1.376e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-17-g5117d21af790) finalized