MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-18-g2a555f86eb8a) initialized Starting run at 05:35:21 UTC on 2023-07-14. Successfully read inputs file ... Castro git describe: 23.07-14-g10cafd240 AMReX git describe: 23.07-18-g2a555f86e Microphysics git describe: 23.07-25-ge5c0f75c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018384265 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368612044 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.370419428 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327975043 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329626568 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356357712 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345330342 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312247174 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313886622 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311972003 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310938179 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.049832158 seconds Ending run at 05:35:24 UTC on 2023-07-14. Run time = 3.591976693 Run time without initialization = 3.405146233 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.59 ... 3.591 ... 3.592 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2961 2.3588 2.3973 66.74% Gravity::make_radial_gravity() 21 0.316 0.3298 0.3409 9.49% check_for_negative_density() 10 0.02977 0.07285 0.1366 3.80% Castro::estTimeStep() 21 0.02505 0.06917 0.1198 3.34% Castro::initData() 1 0.03865 0.07998 0.1142 3.18% FabArray::setVal() 143 0.06417 0.07662 0.09156 2.55% amrex::Copy() 193 0.07004 0.07827 0.08961 2.49% FabArray::ParallelCopy_finish() 41 0.03792 0.05719 0.07413 2.06% Amr::writePlotFile() 2 0.04829 0.05106 0.05233 1.46% Castro::reset_internal_energy(Fab) 1008 0.04795 0.04923 0.05105 1.42% Castro::normalize_species() 62 0.04139 0.0421 0.04266 1.19% FabArray::ParallelCopy_nowait() 41 0.03486 0.04098 0.0425 1.18% StateData::FillBoundary(geom) 41 0.03287 0.03514 0.03912 1.09% FillPatchIterator::Initialize 41 0.03004 0.0337 0.0367 1.02% Castro::construct_new_gravity_source() 10 0.02194 0.02542 0.03064 0.85% Gravity::interpolate_monopole_grav() 21 0.02769 0.02826 0.03025 0.84% Castro::initialize_do_advance() 10 0.01302 0.01822 0.02228 0.62% Castro::computeTemp() 63 0.01864 0.01964 0.02023 0.56% VisMF::Write(FabArray) 2 0.01351 0.01439 0.01766 0.49% Castro::initialize_advance() 10 0.009853 0.01275 0.01559 0.43% FabArray::Saxpy() 20 0.01072 0.01307 0.0141 0.39% FabArray::setDomainBndry() 41 0.008539 0.011 0.01252 0.35% MultiFab::contains_nan() 20 0.009439 0.01075 0.01225 0.34% Castro::construct_old_gravity_source() 10 0.006937 0.009566 0.01023 0.28% Castro::initMFs() 1 0.007182 0.007716 0.008622 0.24% main() 1 0.005114 0.006502 0.007141 0.20% StateData::define() 4 0.005971 0.006333 0.00698 0.19% Castro::construct_new_source() 50 0.005742 0.006172 0.006526 0.18% Castro::enforce_min_density() 62 0.005803 0.006073 0.006451 0.18% Castro::swap_state_time_levels() 10 0.002992 0.004652 0.005471 0.15% Amr::coarseTimeStep() 10 0.00138 0.002962 0.004156 0.12% Gravity::get_new_grav_vector() 11 0.002999 0.003685 0.004058 0.11% Gravity::get_old_grav_vector() 10 0.001532 0.001997 0.002544 0.07% Castro::buildMetrics() 1 0.001672 0.001808 0.002154 0.06% Castro::finalize_do_advance() 10 0.0006795 0.001695 0.002123 0.06% AmrLevel::FillPatch() 41 0.0009125 0.00104 0.001185 0.03% Amr::timeStep() 10 0.0001771 0.0002492 0.0004563 0.01% Amr::InitAmr() 1 0.0002646 0.0002992 0.0004513 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002758 0.0002944 0.0003159 0.01% Castro::do_advance_ctu() 10 0.0001526 0.0001858 0.000222 0.01% DistributionMapping::LeastUsedCPUs() 1 7.756e-06 0.0001634 0.0001952 0.01% Castro::clean_state() 62 0.0001382 0.0001498 0.0001659 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001011 0.0001173 0.0001391 0.00% StateDataPhysBCFunct::() 41 8.337e-05 9.948e-05 0.0001389 0.00% Castro::do_old_sources() 10 9.401e-05 9.916e-05 0.0001096 0.00% Castro::finalize_advance() 10 8.347e-05 9.257e-05 0.0001065 0.00% Castro::enforce_consistent_e() 1 7.855e-05 8.54e-05 9.581e-05 0.00% Castro::Castro() 1 6.154e-05 7.161e-05 9.401e-05 0.00% Amr::FinalizeInit() 1 3.414e-06 1.532e-05 8.782e-05 0.00% FabArray::ParallelCopy() 41 7.076e-05 7.641e-05 8.574e-05 0.00% Castro::do_new_sources() 10 5.834e-05 6.445e-05 7.787e-05 0.00% Castro::construct_old_source() 50 4.706e-05 6.651e-05 7.531e-05 0.00% FillPatchSingleLevel 41 6.404e-05 6.77e-05 7.144e-05 0.00% Castro::subcycle_advance_ctu() 10 4.469e-05 5.636e-05 6.649e-05 0.00% Amr::writeSmallPlotFile() 1 2.855e-05 4.19e-05 5.949e-05 0.00% Castro::construct_new_gravity() 10 3.119e-05 4.298e-05 5.727e-05 0.00% FabArrayBase::getCPC() 41 4.362e-05 4.804e-05 5.496e-05 0.00% Castro::check_for_nan() 20 1.952e-05 2.823e-05 5.479e-05 0.00% Castro::construct_old_gravity() 10 3.611e-05 4.676e-05 5.25e-05 0.00% Castro::advance() 10 3.711e-05 4.565e-05 5.237e-05 0.00% Castro::apply_source_to_state() 20 3.629e-05 4.305e-05 5.137e-05 0.00% Amr::defBaseLevel() 1 2.355e-05 3.052e-05 3.727e-05 0.00% Castro::enforce_speed_limit() 62 2.71e-05 2.913e-05 3.088e-05 0.00% Castro::expand_state() 10 1.925e-05 2.546e-05 3.063e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.694e-05 2.273e-05 3.028e-05 0.00% FabArrayBase::CPC::define() 2 2.024e-05 2.352e-05 2.673e-05 0.00% Gravity::swapTimeLevels() 10 1.096e-05 1.513e-05 1.926e-05 0.00% Castro::post_timestep() 10 1.263e-05 1.592e-05 1.906e-05 0.00% Amr::InitializeInit() 1 1.773e-06 3.949e-06 1.446e-05 0.00% Gravity::set_mass_offset() 10 8.133e-06 1.174e-05 1.374e-05 0.00% Castro::computeNewDt() 9 8.475e-06 9.643e-06 1.255e-05 0.00% Amr::initSubcycle() 1 8.597e-06 9.465e-06 1.035e-05 0.00% Castro::create_source_corrector() 10 7.072e-06 8.308e-06 9.568e-06 0.00% Castro::FluxRegCrseInit 10 5.27e-06 7.266e-06 9.331e-06 0.00% Castro::retry_advance_ctu() 10 5.851e-06 7.388e-06 8.628e-06 0.00% Amr::init() 1 2.184e-06 3.259e-06 8.563e-06 0.00% Amr::initialInit() 1 1.399e-06 2.531e-06 7.862e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.133e-06 5.414e-06 6.185e-06 0.00% Castro::post_init() 1 3.286e-06 4.052e-06 5.902e-06 0.00% Castro::computeInitialDt() 2 4.067e-06 4.801e-06 5.542e-06 0.00% Castro::post_regrid() 1 1.837e-06 3.081e-06 3.981e-06 0.00% Castro::FluxRegFineAdd() 10 1.917e-06 2.216e-06 2.62e-06 0.00% DistributionMapping::Distribute() 1 1.021e-06 1.416e-06 2.052e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.59 3.591 3.592 100.00% Amr::coarseTimeStep() 10 3.348 3.348 3.348 93.21% Amr::timeStep() 10 3.334 3.336 3.337 92.90% Castro::advance() 10 3.318 3.319 3.321 92.44% Castro::subcycle_advance_ctu() 10 3.225 3.235 3.244 90.31% Castro::do_advance_ctu() 10 3.225 3.235 3.244 90.31% Castro::construct_ctu_hydro_source() 10 2.448 2.452 2.454 68.32% Gravity::make_radial_gravity() 21 0.3358 0.3468 0.3576 9.95% Gravity::get_new_grav_vector() 11 0.233 0.2339 0.2347 6.53% AmrLevel::FillPatch() 41 0.1893 0.2089 0.2239 6.23% Castro::construct_new_gravity() 10 0.2038 0.205 0.2058 5.73% Castro::construct_old_gravity() 10 0.1886 0.1968 0.2057 5.73% Gravity::get_old_grav_vector() 10 0.1874 0.196 0.2051 5.71% FillPatchIterator::Initialize 41 0.1591 0.1784 0.1913 5.33% Castro::initialize_do_advance() 10 0.1624 0.177 0.1888 5.26% Amr::init() 1 0.1863 0.1864 0.1864 5.19% Amr::initialInit() 1 0.1677 0.1681 0.169 4.70% FillPatchIterator::FillFromLevel0() 41 0.1188 0.1337 0.1442 4.01% FillPatchSingleLevel 41 0.1186 0.1336 0.1441 4.01% check_for_negative_density() 10 0.02977 0.07285 0.1366 3.80% Amr::InitializeInit() 1 0.06005 0.1022 0.1358 3.78% Amr::defBaseLevel() 1 0.06004 0.1021 0.1358 3.78% Castro::expand_state() 10 0.107 0.1219 0.1351 3.76% Castro::estTimeStep() 21 0.02505 0.06917 0.1198 3.34% Castro::clean_state() 62 0.1151 0.1166 0.1188 3.31% Castro::initData() 1 0.04268 0.08391 0.1182 3.29% FabArray::ParallelCopy() 41 0.08018 0.09831 0.1097 3.05% Amr::FinalizeInit() 1 0.03237 0.06596 0.108 3.01% Castro::do_old_sources() 10 0.08991 0.09314 0.09548 2.66% FabArray::setVal() 143 0.06417 0.07662 0.09156 2.55% Castro::initialize_advance() 10 0.07199 0.08075 0.0905 2.52% amrex::Copy() 193 0.07004 0.07827 0.08961 2.49% Castro::do_new_sources() 10 0.05921 0.06748 0.0808 2.25% Castro::computeInitialDt() 2 0.002201 0.03579 0.0779 2.17% FabArray::ParallelCopy_finish() 41 0.03792 0.05719 0.07413 2.06% Castro::computeTemp() 63 0.06776 0.06916 0.07157 1.99% Amr::writePlotFile() 2 0.06733 0.06821 0.06865 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04825 0.04953 0.05135 1.43% Castro::reset_internal_energy(Fab) 1008 0.04795 0.04923 0.05105 1.42% Castro::normalize_species() 62 0.04139 0.0421 0.04266 1.19% FabArray::ParallelCopy_nowait() 41 0.03493 0.04105 0.04257 1.19% StateDataPhysBCFunct::() 41 0.03297 0.03524 0.03923 1.09% StateData::FillBoundary(geom) 41 0.03287 0.03514 0.03912 1.09% Castro::construct_new_source() 50 0.02809 0.03159 0.03699 1.03% Castro::finalize_do_advance() 10 0.0135 0.02663 0.03559 0.99% Castro::construct_new_gravity_source() 10 0.02194 0.02542 0.03064 0.85% Castro::post_init() 1 0.02942 0.02978 0.03033 0.84% Gravity::interpolate_monopole_grav() 21 0.02769 0.02826 0.03025 0.84% VisMF::Write(FabArray) 2 0.01351 0.01439 0.01766 0.49% Castro::post_timestep() 10 0.01546 0.01598 0.01654 0.46% Castro::apply_source_to_state() 20 0.01076 0.01311 0.01414 0.39% FabArray::Saxpy() 20 0.01072 0.01307 0.0141 0.39% FabArray::setDomainBndry() 41 0.008539 0.011 0.01252 0.35% Castro::Castro() 1 0.01116 0.01168 0.01249 0.35% Castro::check_for_nan() 20 0.009459 0.01078 0.01228 0.34% MultiFab::contains_nan() 20 0.009439 0.01075 0.01225 0.34% Castro::construct_old_source() 50 0.006985 0.009632 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.006937 0.009566 0.01023 0.28% Castro::initMFs() 1 0.007182 0.007716 0.008622 0.24% Castro::computeNewDt() 9 0.008445 0.008457 0.008464 0.24% AmrLevel::AmrLevel(dm) 1 0.005991 0.006355 0.006997 0.19% StateData::define() 4 0.005971 0.006333 0.00698 0.19% Castro::enforce_min_density() 62 0.005803 0.006073 0.006451 0.18% Castro::swap_state_time_levels() 10 0.002992 0.004652 0.005471 0.15% Castro::finalize_advance() 10 0.002894 0.003771 0.004783 0.13% Castro::buildMetrics() 1 0.001787 0.001941 0.002318 0.06% Castro::post_regrid() 1 0.001527 0.001632 0.00197 0.05% Amr::InitAmr() 1 0.0002746 0.0003087 0.0004614 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.316e-05 0.0001703 0.0002028 0.01% DistributionMapping::LeastUsedCPUs() 1 7.756e-06 0.0001634 0.0001952 0.01% Castro::enforce_consistent_e() 1 7.855e-05 8.54e-05 9.581e-05 0.00% FabArrayBase::getCPC() 41 6.439e-05 7.156e-05 7.931e-05 0.00% Amr::writeSmallPlotFile() 1 2.855e-05 4.19e-05 5.949e-05 0.00% Castro::enforce_speed_limit() 62 2.71e-05 2.913e-05 3.088e-05 0.00% FabArrayBase::CPC::define() 2 2.024e-05 2.352e-05 2.673e-05 0.00% Gravity::swapTimeLevels() 10 1.096e-05 1.513e-05 1.926e-05 0.00% Gravity::set_mass_offset() 10 8.133e-06 1.174e-05 1.374e-05 0.00% Amr::initSubcycle() 1 8.597e-06 9.465e-06 1.035e-05 0.00% Castro::create_source_corrector() 10 7.072e-06 8.308e-06 9.568e-06 0.00% Castro::FluxRegCrseInit 10 5.27e-06 7.266e-06 9.331e-06 0.00% Castro::retry_advance_ctu() 10 5.851e-06 7.388e-06 8.628e-06 0.00% Castro::FluxRegFineAdd() 10 1.917e-06 2.216e-06 2.62e-06 0.00% DistributionMapping::Distribute() 1 1.021e-06 1.416e-06 2.052e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-18-g2a555f86eb8a) finalized