MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-24-g01b750d909b0) initialized Starting run at 05:32:29 UTC on 2023-07-17. Successfully read inputs file ... Castro git describe: 23.07-14-g10cafd240 AMReX git describe: 23.07-24-g01b750d90 Microphysics git describe: 23.07-28-g5fc83334 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01711365 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365070731 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.3649289 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334447696 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337678378 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.370147927 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341741069 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.320547133 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31681335 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316434061 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315720225 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01065538 seconds Ending run at 05:32:32 UTC on 2023-07-17. Run time = 3.604621205 Run time without initialization = 3.401913749 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.603 ... 3.604 ... 3.605 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3162 2.3748 2.4637 68.35% Gravity::make_radial_gravity() 21 0.3131 0.3267 0.3436 9.53% check_for_negative_density() 10 0.01601 0.1102 0.1724 4.78% Castro::estTimeStep() 21 0.02248 0.08305 0.1347 3.74% Castro::initData() 1 0.03854 0.08194 0.1289 3.58% amrex::Copy() 193 0.06421 0.0768 0.08575 2.38% FabArray::setVal() 143 0.0631 0.07111 0.08304 2.30% FabArray::ParallelCopy_finish() 41 0.03533 0.05072 0.07119 1.98% Castro::reset_internal_energy(Fab) 1008 0.04808 0.04986 0.05175 1.44% FabArray::ParallelCopy_nowait() 41 0.0353 0.04123 0.04283 1.19% Castro::normalize_species() 62 0.04056 0.04188 0.04246 1.18% StateData::FillBoundary(geom) 41 0.03379 0.03688 0.04112 1.14% FillPatchIterator::Initialize 41 0.03013 0.03332 0.03549 0.98% Gravity::interpolate_monopole_grav() 21 0.02826 0.02869 0.03017 0.84% Castro::construct_new_gravity_source() 10 0.02225 0.02482 0.02833 0.79% Castro::initialize_do_advance() 10 0.01268 0.01789 0.02125 0.59% Castro::computeTemp() 63 0.01874 0.0197 0.0206 0.57% VisMF::Write(FabArray) 2 0.01416 0.01481 0.01741 0.48% Castro::initialize_advance() 10 0.008942 0.01174 0.01537 0.43% FabArray::Saxpy() 20 0.01054 0.01258 0.01343 0.37% FabArray::setDomainBndry() 41 0.008895 0.01126 0.01283 0.36% MultiFab::contains_nan() 20 0.01049 0.01139 0.01273 0.35% Amr::writePlotFile() 2 0.007785 0.009761 0.01059 0.29% Castro::initMFs() 1 0.006897 0.008159 0.01031 0.29% Castro::construct_old_gravity_source() 10 0.007023 0.009563 0.01007 0.28% StateData::define() 4 0.005867 0.00685 0.008572 0.24% main() 1 0.005165 0.006454 0.006937 0.19% Castro::construct_new_source() 50 0.005672 0.006227 0.006554 0.18% Castro::enforce_min_density() 62 0.005781 0.006035 0.006311 0.18% Gravity::get_new_grav_vector() 11 0.002883 0.003865 0.00603 0.17% Castro::swap_state_time_levels() 10 0.003367 0.004511 0.004754 0.13% Amr::coarseTimeStep() 10 0.001309 0.001907 0.002723 0.08% Gravity::get_old_grav_vector() 10 0.001412 0.001976 0.002545 0.07% Castro::buildMetrics() 1 0.001615 0.001916 0.002434 0.07% Castro::finalize_do_advance() 10 0.0006713 0.001625 0.002035 0.06% AmrLevel::FillPatch() 41 0.001013 0.00116 0.001265 0.04% Amr::InitAmr() 1 0.0002913 0.0003599 0.000486 0.01% Amr::timeStep() 10 0.0001633 0.0002427 0.0004645 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002754 0.0002921 0.0003082 0.01% DistributionMapping::LeastUsedCPUs() 1 8.21e-06 0.0001528 0.000228 0.01% Castro::do_advance_ctu() 10 0.0001451 0.0001713 0.0002041 0.01% Castro::clean_state() 62 0.0001392 0.0001627 0.0001999 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.000116 0.0001396 0.00% StateDataPhysBCFunct::() 41 7.871e-05 0.000106 0.0001266 0.00% Castro::finalize_advance() 10 7.55e-05 0.0001017 0.0001183 0.00% Castro::do_old_sources() 10 6.305e-05 9.326e-05 0.0001108 0.00% Castro::enforce_consistent_e() 1 7.759e-05 8.564e-05 8.978e-05 0.00% FabArray::ParallelCopy() 41 6.441e-05 7.681e-05 8.754e-05 0.00% Castro::Castro() 1 6.138e-05 7.248e-05 8.685e-05 0.00% Castro::construct_old_source() 50 4.235e-05 6.845e-05 7.712e-05 0.00% Castro::do_new_sources() 10 5.292e-05 6.722e-05 7.655e-05 0.00% FillPatchSingleLevel 41 5.705e-05 6.778e-05 7.383e-05 0.00% Amr::FinalizeInit() 1 4.13e-06 1.255e-05 6.724e-05 0.00% Amr::writeSmallPlotFile() 1 2.712e-05 5.349e-05 6.605e-05 0.00% Castro::subcycle_advance_ctu() 10 3.846e-05 5.097e-05 6.319e-05 0.00% Castro::construct_old_gravity() 10 4.175e-05 4.976e-05 6.066e-05 0.00% FabArrayBase::getCPC() 41 4.422e-05 5.14e-05 5.813e-05 0.00% Castro::apply_source_to_state() 20 2.938e-05 4.274e-05 5.154e-05 0.00% Castro::construct_new_gravity() 10 3.51e-05 4.029e-05 5.079e-05 0.00% Castro::advance() 10 3.801e-05 4.395e-05 4.808e-05 0.00% Amr::defBaseLevel() 1 2.557e-05 3.484e-05 4.749e-05 0.00% Castro::enforce_speed_limit() 62 2.398e-05 2.856e-05 3.653e-05 0.00% FabArrayBase::CPC::define() 2 2.21e-05 2.466e-05 2.767e-05 0.00% Castro::check_for_nan() 20 2.149e-05 2.245e-05 2.63e-05 0.00% Castro::expand_state() 10 1.924e-05 2.304e-05 2.629e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.492e-05 2.203e-05 2.538e-05 0.00% Castro::post_timestep() 10 1.443e-05 1.556e-05 1.795e-05 0.00% Gravity::swapTimeLevels() 10 8.421e-06 1.343e-05 1.719e-05 0.00% Amr::initSubcycle() 1 9.166e-06 1.174e-05 1.611e-05 0.00% Gravity::set_mass_offset() 10 8.983e-06 1.099e-05 1.279e-05 0.00% Castro::computeNewDt() 9 9.312e-06 1.092e-05 1.161e-05 0.00% Castro::create_source_corrector() 10 5.959e-06 8.946e-06 1.11e-05 0.00% Castro::FluxRegCrseInit 10 6.835e-06 7.581e-06 8.472e-06 0.00% Castro::retry_advance_ctu() 10 6.742e-06 7.603e-06 8.116e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.574e-06 4.816e-06 7.105e-06 0.00% Castro::post_init() 1 3.073e-06 4.168e-06 5.981e-06 0.00% Castro::computeInitialDt() 2 3.806e-06 4.386e-06 5.264e-06 0.00% Amr::InitializeInit() 1 2.103e-06 2.643e-06 5.027e-06 0.00% Castro::post_regrid() 1 2.319e-06 3.16e-06 4.546e-06 0.00% Amr::init() 1 1.835e-06 2.287e-06 2.759e-06 0.00% Castro::FluxRegFineAdd() 10 1.952e-06 2.217e-06 2.564e-06 0.00% Amr::initialInit() 1 1.432e-06 1.859e-06 2.486e-06 0.00% DistributionMapping::Distribute() 1 9.23e-07 1.274e-06 1.748e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.603 3.604 3.605 100.00% Amr::coarseTimeStep() 10 3.384 3.384 3.384 93.89% Amr::timeStep() 10 3.372 3.373 3.373 93.59% Castro::advance() 10 3.356 3.357 3.357 93.13% Castro::subcycle_advance_ctu() 10 3.271 3.279 3.284 91.12% Castro::do_advance_ctu() 10 3.271 3.278 3.284 91.11% Castro::construct_ctu_hydro_source() 10 2.503 2.507 2.511 69.65% Gravity::make_radial_gravity() 21 0.3286 0.3431 0.3579 9.93% Gravity::get_new_grav_vector() 11 0.2269 0.2293 0.2309 6.41% AmrLevel::FillPatch() 41 0.1849 0.2041 0.2178 6.04% Castro::construct_old_gravity() 10 0.1891 0.1972 0.2087 5.79% Gravity::get_old_grav_vector() 10 0.1884 0.1966 0.2081 5.77% Castro::construct_new_gravity() 10 0.2016 0.2035 0.2043 5.67% Amr::init() 1 0.2021 0.2022 0.2023 5.61% FillPatchIterator::Initialize 41 0.1557 0.1739 0.1864 5.17% Amr::initialInit() 1 0.1849 0.1856 0.1863 5.17% Castro::initialize_do_advance() 10 0.1648 0.173 0.1803 5.00% check_for_negative_density() 10 0.01601 0.1102 0.1724 4.78% Amr::InitializeInit() 1 0.05876 0.1046 0.1559 4.32% Amr::defBaseLevel() 1 0.05875 0.1046 0.1558 4.32% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1293 0.1427 3.96% FillPatchSingleLevel 41 0.1155 0.1292 0.1426 3.96% Castro::estTimeStep() 21 0.02248 0.08305 0.1347 3.74% Castro::initData() 1 0.04233 0.08566 0.1326 3.68% Amr::FinalizeInit() 1 0.02982 0.081 0.1274 3.53% Castro::expand_state() 10 0.1069 0.1181 0.1265 3.51% Castro::clean_state() 62 0.1147 0.117 0.1195 3.32% FabArray::ParallelCopy() 41 0.07796 0.09211 0.1066 2.96% Castro::computeInitialDt() 2 0.002193 0.05359 0.0995 2.76% Castro::do_old_sources() 10 0.08876 0.09295 0.09751 2.70% amrex::Copy() 193 0.06421 0.0768 0.08575 2.38% FabArray::setVal() 143 0.0631 0.07111 0.08304 2.30% Castro::initialize_advance() 10 0.06887 0.07449 0.08219 2.28% Castro::do_new_sources() 10 0.05968 0.06635 0.07625 2.12% Castro::computeTemp() 63 0.06785 0.06985 0.07236 2.01% FabArray::ParallelCopy_finish() 41 0.03533 0.05072 0.07119 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04837 0.05015 0.05205 1.44% Castro::reset_internal_energy(Fab) 1008 0.04808 0.04986 0.05175 1.44% FabArray::ParallelCopy_nowait() 41 0.03537 0.04131 0.04291 1.19% Castro::normalize_species() 62 0.04056 0.04188 0.04246 1.18% StateDataPhysBCFunct::() 41 0.0339 0.03699 0.04122 1.14% StateData::FillBoundary(geom) 41 0.03379 0.03688 0.04112 1.14% Castro::construct_new_source() 50 0.02845 0.03105 0.03488 0.97% Castro::finalize_do_advance() 10 0.01164 0.0227 0.0305 0.85% Gravity::interpolate_monopole_grav() 21 0.02826 0.02869 0.03017 0.84% Castro::construct_new_gravity_source() 10 0.02225 0.02482 0.02833 0.79% Amr::writePlotFile() 2 0.02677 0.02734 0.02802 0.78% Castro::post_init() 1 0.02614 0.02694 0.02747 0.76% VisMF::Write(FabArray) 2 0.01416 0.01481 0.01741 0.48% Castro::post_timestep() 10 0.01581 0.01606 0.01639 0.45% Castro::Castro() 1 0.01029 0.01187 0.01462 0.41% Castro::apply_source_to_state() 20 0.01057 0.01262 0.01347 0.37% FabArray::Saxpy() 20 0.01054 0.01258 0.01343 0.37% FabArray::setDomainBndry() 41 0.008895 0.01126 0.01283 0.36% Castro::check_for_nan() 20 0.01051 0.01142 0.01275 0.35% MultiFab::contains_nan() 20 0.01049 0.01139 0.01273 0.35% Castro::initMFs() 1 0.006897 0.008159 0.01031 0.29% Castro::construct_old_source() 50 0.007065 0.009632 0.01015 0.28% Castro::construct_old_gravity_source() 10 0.007023 0.009563 0.01007 0.28% AmrLevel::AmrLevel(dm) 1 0.00589 0.006872 0.008598 0.24% StateData::define() 4 0.005867 0.00685 0.008572 0.24% Castro::computeNewDt() 9 0.008391 0.008396 0.008399 0.23% Castro::enforce_min_density() 62 0.005781 0.006035 0.006311 0.18% Castro::swap_state_time_levels() 10 0.003367 0.004511 0.004754 0.13% Castro::finalize_advance() 10 0.00298 0.003475 0.004001 0.11% Castro::buildMetrics() 1 0.001724 0.00207 0.002672 0.07% Castro::post_regrid() 1 0.001583 0.001655 0.001721 0.05% Amr::InitAmr() 1 0.0003016 0.0003716 0.0005017 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.354e-05 0.0001589 0.0002368 0.01% DistributionMapping::LeastUsedCPUs() 1 8.21e-06 0.0001528 0.000228 0.01% Castro::enforce_consistent_e() 1 7.759e-05 8.564e-05 8.978e-05 0.00% FabArrayBase::getCPC() 41 7.027e-05 7.605e-05 8.2e-05 0.00% Amr::writeSmallPlotFile() 1 2.712e-05 5.349e-05 6.605e-05 0.00% Castro::enforce_speed_limit() 62 2.398e-05 2.856e-05 3.653e-05 0.00% FabArrayBase::CPC::define() 2 2.21e-05 2.466e-05 2.767e-05 0.00% Gravity::swapTimeLevels() 10 8.421e-06 1.343e-05 1.719e-05 0.00% Amr::initSubcycle() 1 9.166e-06 1.174e-05 1.611e-05 0.00% Gravity::set_mass_offset() 10 8.983e-06 1.099e-05 1.279e-05 0.00% Castro::create_source_corrector() 10 5.959e-06 8.946e-06 1.11e-05 0.00% Castro::FluxRegCrseInit 10 6.835e-06 7.581e-06 8.472e-06 0.00% Castro::retry_advance_ctu() 10 6.742e-06 7.603e-06 8.116e-06 0.00% Castro::FluxRegFineAdd() 10 1.952e-06 2.217e-06 2.564e-06 0.00% DistributionMapping::Distribute() 1 9.23e-07 1.274e-06 1.748e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-24-g01b750d909b0) finalized