MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-25-g10b6cb26d0ac) initialized Starting run at 05:36:02 UTC on 2023-07-18. Successfully read inputs file ... Castro git describe: 23.07-15-gdb09908b9 AMReX git describe: 23.07-25-g10b6cb26d Microphysics git describe: 23.07-32-g40bb827a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016471348 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362053838 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360900751 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340178516 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337254803 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.376995207 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.348801641 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316658272 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317363546 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317124911 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.320361928 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012091838 seconds Ending run at 05:36:06 UTC on 2023-07-18. Run time = 3.608052627 Run time without initialization = 3.417215871 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.607 ... 3.608 ... 3.608 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2576 2.3729 2.4488 67.87% Gravity::make_radial_gravity() 21 0.3183 0.3288 0.3409 9.45% check_for_negative_density() 10 0.02377 0.1029 0.2244 6.22% Castro::estTimeStep() 21 0.02419 0.07369 0.121 3.35% Castro::initData() 1 0.03986 0.08081 0.1205 3.34% FabArray::setVal() 143 0.06427 0.07635 0.0918 2.54% amrex::Copy() 193 0.0702 0.07912 0.08898 2.47% FabArray::ParallelCopy_finish() 41 0.03635 0.05637 0.06818 1.89% Castro::reset_internal_energy(Fab) 1008 0.04925 0.05043 0.0518 1.44% FabArray::ParallelCopy_nowait() 41 0.03674 0.04202 0.04435 1.23% Castro::normalize_species() 62 0.04167 0.04227 0.04317 1.20% StateData::FillBoundary(geom) 41 0.03249 0.03712 0.04028 1.12% FillPatchIterator::Initialize 41 0.0289 0.03508 0.03747 1.04% Castro::construct_new_gravity_source() 10 0.02267 0.02541 0.0295 0.82% Gravity::interpolate_monopole_grav() 21 0.02754 0.02822 0.02867 0.79% Castro::initialize_do_advance() 10 0.01197 0.01877 0.02265 0.63% Castro::computeTemp() 63 0.01772 0.01981 0.02046 0.57% VisMF::Write(FabArray) 2 0.0136 0.01425 0.017 0.47% Castro::initialize_advance() 10 0.00967 0.01253 0.01575 0.44% FabArray::Saxpy() 20 0.0115 0.01292 0.01385 0.38% FabArray::setDomainBndry() 41 0.008447 0.01172 0.01301 0.36% Amr::writePlotFile() 2 0.008819 0.01144 0.01215 0.34% MultiFab::contains_nan() 20 0.009859 0.01078 0.01137 0.32% Castro::construct_old_gravity_source() 10 0.007118 0.009702 0.01037 0.29% Castro::initMFs() 1 0.007318 0.007785 0.008521 0.24% StateData::define() 4 0.006112 0.006422 0.006918 0.19% main() 1 0.005427 0.006395 0.006733 0.19% Castro::enforce_min_density() 62 0.005941 0.006211 0.006574 0.18% Gravity::get_new_grav_vector() 11 0.002988 0.004296 0.006466 0.18% Castro::construct_new_source() 50 0.005781 0.006214 0.006448 0.18% Castro::swap_state_time_levels() 10 0.003615 0.004938 0.005346 0.15% Amr::coarseTimeStep() 10 0.00189 0.002506 0.003136 0.09% Gravity::get_old_grav_vector() 10 0.001571 0.002022 0.00242 0.07% Castro::finalize_do_advance() 10 0.000649 0.00171 0.002189 0.06% Castro::buildMetrics() 1 0.00175 0.001843 0.001975 0.05% AmrLevel::FillPatch() 41 0.0008775 0.00111 0.001256 0.03% Amr::timeStep() 10 0.0001798 0.0002391 0.0004519 0.01% Castro::clean_state() 62 0.0001506 0.0002106 0.0004219 0.01% Amr::InitAmr() 1 0.0002805 0.000314 0.000418 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002848 0.0002996 0.0003126 0.01% Castro::do_advance_ctu() 10 0.0001518 0.0001721 0.0002073 0.01% DistributionMapping::LeastUsedCPUs() 1 6.498e-06 0.0001028 0.0001379 0.00% StateDataPhysBCFunct::() 41 8.967e-05 0.0001074 0.0001355 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001045 0.0001126 0.0001277 0.00% Castro::enforce_consistent_e() 1 7.71e-05 8.999e-05 0.0001129 0.00% Castro::do_old_sources() 10 7.74e-05 9.198e-05 0.0001076 0.00% Castro::finalize_advance() 10 9.975e-05 0.0001033 0.0001061 0.00% Castro::construct_old_source() 50 4.869e-05 6.949e-05 9.066e-05 0.00% Amr::FinalizeInit() 1 3.803e-06 1.518e-05 9.064e-05 0.00% Castro::Castro() 1 5.595e-05 7.121e-05 8.652e-05 0.00% FabArray::ParallelCopy() 41 6.998e-05 7.322e-05 7.872e-05 0.00% FillPatchSingleLevel 41 5.777e-05 6.967e-05 7.571e-05 0.00% FabArrayBase::getCPC() 41 4.654e-05 5.499e-05 7.242e-05 0.00% Amr::writeSmallPlotFile() 1 2.635e-05 5.494e-05 6.866e-05 0.00% Castro::advance() 10 4.213e-05 5.182e-05 6.829e-05 0.00% Castro::do_new_sources() 10 4.781e-05 6.141e-05 6.726e-05 0.00% Castro::subcycle_advance_ctu() 10 4.479e-05 5.277e-05 6.148e-05 0.00% Castro::construct_old_gravity() 10 4.258e-05 4.812e-05 5.94e-05 0.00% Castro::apply_source_to_state() 20 4.107e-05 4.678e-05 5.734e-05 0.00% Amr::defBaseLevel() 1 2.506e-05 3.904e-05 5.318e-05 0.00% Castro::construct_new_gravity() 10 3.847e-05 4.438e-05 4.954e-05 0.00% Castro::enforce_speed_limit() 62 2.607e-05 3.154e-05 3.885e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.386e-05 2.421e-05 3.531e-05 0.00% Castro::post_timestep() 10 1.341e-05 1.752e-05 3.285e-05 0.00% Castro::expand_state() 10 1.991e-05 2.577e-05 3.019e-05 0.00% FabArrayBase::CPC::define() 2 2.03e-05 2.492e-05 2.979e-05 0.00% Castro::check_for_nan() 20 1.9e-05 2.056e-05 2.248e-05 0.00% Amr::initSubcycle() 1 9.487e-06 1.254e-05 2.039e-05 0.00% Gravity::swapTimeLevels() 10 1.276e-05 1.553e-05 1.912e-05 0.00% Gravity::set_mass_offset() 10 9.554e-06 1.082e-05 1.316e-05 0.00% Castro::computeNewDt() 9 9.724e-06 1.124e-05 1.242e-05 0.00% Castro::create_source_corrector() 10 6.507e-06 8.955e-06 1.136e-05 0.00% Castro::FluxRegCrseInit 10 6.326e-06 7.648e-06 8.706e-06 0.00% Castro::retry_advance_ctu() 10 6.329e-06 7.362e-06 8.309e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.754e-06 5.033e-06 7.037e-06 0.00% Castro::computeInitialDt() 2 3.697e-06 4.45e-06 5.519e-06 0.00% Castro::post_regrid() 1 2.064e-06 2.958e-06 5.039e-06 0.00% Castro::post_init() 1 3.195e-06 4.27e-06 4.969e-06 0.00% Amr::InitializeInit() 1 2.02e-06 2.79e-06 4.291e-06 0.00% Amr::init() 1 1.928e-06 2.305e-06 3.068e-06 0.00% Castro::FluxRegFineAdd() 10 2.027e-06 2.507e-06 3.064e-06 0.00% Amr::initialInit() 1 1.749e-06 2.071e-06 2.754e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.281e-06 1.907e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.607 3.608 3.608 100.00% Amr::coarseTimeStep() 10 3.398 3.398 3.398 94.19% Amr::timeStep() 10 3.385 3.386 3.387 93.86% Castro::advance() 10 3.369 3.37 3.371 93.44% Castro::subcycle_advance_ctu() 10 3.277 3.287 3.297 91.38% Castro::do_advance_ctu() 10 3.277 3.287 3.297 91.38% Castro::construct_ctu_hydro_source() 10 2.495 2.498 2.507 69.49% Gravity::make_radial_gravity() 21 0.3352 0.3455 0.3561 9.87% Gravity::get_new_grav_vector() 11 0.2266 0.2314 0.2344 6.50% AmrLevel::FillPatch() 41 0.1896 0.2136 0.2313 6.41% check_for_negative_density() 10 0.02377 0.1029 0.2244 6.22% Castro::construct_old_gravity() 10 0.193 0.199 0.2097 5.81% Gravity::get_old_grav_vector() 10 0.1925 0.1983 0.209 5.79% Castro::construct_new_gravity() 10 0.2016 0.2054 0.2076 5.75% FillPatchIterator::Initialize 41 0.1623 0.1828 0.1982 5.49% Castro::initialize_do_advance() 10 0.16 0.181 0.1941 5.38% Amr::init() 1 0.1903 0.1904 0.1904 5.28% Amr::initialInit() 1 0.1737 0.1739 0.174 4.82% FillPatchIterator::FillFromLevel0() 41 0.1194 0.136 0.1484 4.11% FillPatchSingleLevel 41 0.1193 0.1359 0.1482 4.11% Amr::InitializeInit() 1 0.06179 0.1034 0.1441 3.99% Amr::defBaseLevel() 1 0.06179 0.1034 0.1441 3.99% Castro::expand_state() 10 0.1071 0.1248 0.1385 3.84% Castro::initData() 1 0.04403 0.08491 0.1243 3.44% Castro::estTimeStep() 21 0.02419 0.07369 0.121 3.35% Castro::clean_state() 62 0.1167 0.1183 0.1209 3.35% Amr::FinalizeInit() 1 0.02987 0.07044 0.1121 3.11% FabArray::ParallelCopy() 41 0.07897 0.09855 0.1112 3.08% Castro::do_old_sources() 10 0.08983 0.09536 0.09974 2.76% FabArray::setVal() 143 0.06427 0.07635 0.0918 2.54% Castro::initialize_advance() 10 0.06889 0.07948 0.08945 2.48% amrex::Copy() 193 0.0702 0.07912 0.08898 2.47% Castro::computeInitialDt() 2 0.002087 0.04271 0.08438 2.34% Castro::do_new_sources() 10 0.06012 0.0674 0.07769 2.15% Castro::computeTemp() 63 0.06864 0.07054 0.0724 2.01% FabArray::ParallelCopy_finish() 41 0.03635 0.05637 0.06818 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04955 0.05073 0.05211 1.44% Castro::reset_internal_energy(Fab) 1008 0.04925 0.05043 0.0518 1.44% FabArray::ParallelCopy_nowait() 41 0.03684 0.0421 0.04442 1.23% Castro::normalize_species() 62 0.04167 0.04227 0.04317 1.20% StateDataPhysBCFunct::() 41 0.0326 0.03723 0.04038 1.12% StateData::FillBoundary(geom) 41 0.03249 0.03712 0.04028 1.12% Castro::construct_new_source() 50 0.02895 0.03163 0.03566 0.99% Castro::finalize_do_advance() 10 0.01315 0.02392 0.03167 0.88% Castro::construct_new_gravity_source() 10 0.02267 0.02541 0.0295 0.82% Amr::writePlotFile() 2 0.02852 0.02868 0.0289 0.80% Gravity::interpolate_monopole_grav() 21 0.02754 0.02822 0.02867 0.79% Castro::post_init() 1 0.02692 0.02715 0.02727 0.76% VisMF::Write(FabArray) 2 0.0136 0.01425 0.017 0.47% Castro::post_timestep() 10 0.01492 0.01576 0.01625 0.45% Castro::apply_source_to_state() 20 0.01156 0.01296 0.01389 0.38% FabArray::Saxpy() 20 0.0115 0.01292 0.01385 0.38% FabArray::setDomainBndry() 41 0.008447 0.01172 0.01301 0.36% Castro::Castro() 1 0.01141 0.01193 0.0127 0.35% Castro::check_for_nan() 20 0.009878 0.0108 0.01139 0.32% MultiFab::contains_nan() 20 0.009859 0.01078 0.01137 0.32% Castro::construct_old_source() 50 0.007167 0.009772 0.01047 0.29% Castro::construct_old_gravity_source() 10 0.007118 0.009702 0.01037 0.29% Castro::computeNewDt() 9 0.008771 0.008788 0.008803 0.24% Castro::initMFs() 1 0.007318 0.007785 0.008521 0.24% AmrLevel::AmrLevel(dm) 1 0.006126 0.006446 0.006954 0.19% StateData::define() 4 0.006112 0.006422 0.006918 0.19% Castro::enforce_min_density() 62 0.005941 0.006211 0.006574 0.18% Castro::swap_state_time_levels() 10 0.003615 0.004938 0.005346 0.15% Castro::finalize_advance() 10 0.002896 0.003681 0.004791 0.13% Castro::buildMetrics() 1 0.001884 0.001999 0.002153 0.06% Castro::post_regrid() 1 0.00161 0.001663 0.001719 0.05% Amr::InitAmr() 1 0.0002902 0.0003265 0.0004274 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.116e-05 0.0001091 0.0001469 0.00% DistributionMapping::LeastUsedCPUs() 1 6.498e-06 0.0001028 0.0001379 0.00% Castro::enforce_consistent_e() 1 7.71e-05 8.999e-05 0.0001129 0.00% FabArrayBase::getCPC() 41 6.752e-05 7.991e-05 9.655e-05 0.00% Amr::writeSmallPlotFile() 1 2.635e-05 5.494e-05 6.866e-05 0.00% Castro::enforce_speed_limit() 62 2.607e-05 3.154e-05 3.885e-05 0.00% FabArrayBase::CPC::define() 2 2.03e-05 2.492e-05 2.979e-05 0.00% Amr::initSubcycle() 1 9.487e-06 1.254e-05 2.039e-05 0.00% Gravity::swapTimeLevels() 10 1.276e-05 1.553e-05 1.912e-05 0.00% Gravity::set_mass_offset() 10 9.554e-06 1.082e-05 1.316e-05 0.00% Castro::create_source_corrector() 10 6.507e-06 8.955e-06 1.136e-05 0.00% Castro::FluxRegCrseInit 10 6.326e-06 7.648e-06 8.706e-06 0.00% Castro::retry_advance_ctu() 10 6.329e-06 7.362e-06 8.309e-06 0.00% Castro::FluxRegFineAdd() 10 2.027e-06 2.507e-06 3.064e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.281e-06 1.907e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-25-g10b6cb26d0ac) finalized