MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-27-gb523c3297d00) initialized Starting run at 05:36:02 UTC on 2023-07-19. Successfully read inputs file ... Castro git describe: 23.07-16-gcd2cd9695 AMReX git describe: 23.07-27-gb523c3297 Microphysics git describe: 23.07-34-g0ef8cc66 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019193041 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367790652 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352683021 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334012176 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333615113 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358355963 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350311193 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315525079 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314850259 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315981426 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314322819 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010743968 seconds Ending run at 05:36:05 UTC on 2023-07-19. Run time = 3.579083514 Run time without initialization = 3.376116298 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.578 ... 3.579 ... 3.579 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3532 2.3799 2.4264 67.79% Gravity::make_radial_gravity() 21 0.3309 0.3435 0.3549 9.91% Castro::estTimeStep() 21 0.02546 0.0635 0.1204 3.36% Castro::initData() 1 0.03861 0.08582 0.1168 3.26% FabArray::setVal() 143 0.06432 0.07502 0.09056 2.53% check_for_negative_density() 10 0.01211 0.06287 0.0877 2.45% amrex::Copy() 193 0.06545 0.07616 0.08674 2.42% FabArray::ParallelCopy_finish() 41 0.03596 0.05659 0.07747 2.16% Castro::reset_internal_energy(Fab) 1008 0.04859 0.05104 0.05414 1.51% Castro::normalize_species() 62 0.04169 0.04283 0.04379 1.22% FabArray::ParallelCopy_nowait() 41 0.03654 0.04152 0.04345 1.21% StateData::FillBoundary(geom) 41 0.03229 0.0354 0.03868 1.08% FillPatchIterator::Initialize 41 0.02972 0.03369 0.03633 1.02% Castro::construct_new_gravity_source() 10 0.02228 0.02538 0.02967 0.83% Gravity::interpolate_monopole_grav() 21 0.02793 0.02854 0.02898 0.81% Castro::initialize_do_advance() 10 0.01295 0.01824 0.02286 0.64% Castro::computeTemp() 63 0.0194 0.02008 0.02106 0.59% VisMF::Write(FabArray) 2 0.01384 0.01493 0.01878 0.52% Castro::initialize_advance() 10 0.008736 0.01171 0.01513 0.42% Amr::writePlotFile() 2 0.009066 0.01333 0.01503 0.42% FabArray::Saxpy() 20 0.01082 0.01272 0.01338 0.37% FabArray::setDomainBndry() 41 0.008904 0.01103 0.0124 0.35% MultiFab::contains_nan() 20 0.009706 0.01057 0.0115 0.32% Castro::initMFs() 1 0.007076 0.008268 0.01054 0.29% Castro::construct_old_gravity_source() 10 0.007061 0.009579 0.01023 0.29% StateData::define() 4 0.00586 0.006798 0.008635 0.24% main() 1 0.005535 0.006483 0.007132 0.20% Castro::construct_new_source() 50 0.005806 0.006315 0.006625 0.19% Castro::enforce_min_density() 62 0.005854 0.006081 0.006582 0.18% Gravity::get_new_grav_vector() 11 0.00302 0.003946 0.005859 0.16% Castro::swap_state_time_levels() 10 0.003899 0.004683 0.005857 0.16% Amr::coarseTimeStep() 10 0.001055 0.002383 0.003447 0.10% Castro::buildMetrics() 1 0.001661 0.00195 0.002475 0.07% Gravity::get_old_grav_vector() 10 0.001568 0.00191 0.002364 0.07% Castro::finalize_do_advance() 10 0.0007388 0.001697 0.002064 0.06% AmrLevel::FillPatch() 41 0.0009066 0.001116 0.001307 0.04% Amr::InitAmr() 1 0.0002651 0.0003753 0.0006409 0.02% Amr::timeStep() 10 0.0001705 0.0002458 0.0005387 0.02% DistributionMapping::LeastUsedCPUs() 1 8.633e-06 0.0003031 0.0004182 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002813 0.0003112 0.0003419 0.01% Castro::clean_state() 62 0.000136 0.0001713 0.0002171 0.01% Castro::do_advance_ctu() 10 0.0001414 0.0001703 0.0002003 0.01% Castro::enforce_consistent_e() 1 7.761e-05 9.625e-05 0.0001427 0.00% Castro::Castro() 1 5.914e-05 7.689e-05 0.0001364 0.00% FillPatchIterator::FillFromLevel0() 41 9.648e-05 0.000105 0.0001196 0.00% Castro::finalize_advance() 10 7.469e-05 9.068e-05 0.0001185 0.00% Castro::construct_old_source() 50 5.608e-05 7.389e-05 0.000115 0.00% StateDataPhysBCFunct::() 41 8.309e-05 9.411e-05 0.0001126 0.00% Castro::do_old_sources() 10 7.825e-05 9.54e-05 0.0001119 0.00% FillPatchSingleLevel 41 6.877e-05 7.678e-05 9.329e-05 0.00% Amr::FinalizeInit() 1 3.951e-06 1.495e-05 8.605e-05 0.00% FabArray::ParallelCopy() 41 6.519e-05 7.249e-05 8.385e-05 0.00% Amr::writeSmallPlotFile() 1 3.731e-05 5.094e-05 8.176e-05 0.00% Castro::do_new_sources() 10 5.101e-05 6.386e-05 7.062e-05 0.00% Castro::subcycle_advance_ctu() 10 4.137e-05 4.833e-05 5.86e-05 0.00% Castro::advance() 10 4.079e-05 4.545e-05 5.512e-05 0.00% FabArrayBase::getCPC() 41 4.136e-05 4.774e-05 5.399e-05 0.00% Castro::apply_source_to_state() 20 3.4e-05 4.327e-05 5.355e-05 0.00% Castro::construct_old_gravity() 10 3.81e-05 4.449e-05 5.229e-05 0.00% Castro::construct_new_gravity() 10 3.255e-05 3.853e-05 4.607e-05 0.00% Amr::defBaseLevel() 1 2.409e-05 3.013e-05 3.559e-05 0.00% Castro::enforce_speed_limit() 62 2.451e-05 2.752e-05 3.202e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.266e-05 1.978e-05 3.101e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.605e-05 2.975e-05 0.00% Castro::expand_state() 10 1.944e-05 2.407e-05 2.833e-05 0.00% Castro::check_for_nan() 20 1.937e-05 2.091e-05 2.343e-05 0.00% Gravity::swapTimeLevels() 10 1.078e-05 1.4e-05 1.931e-05 0.00% Amr::initSubcycle() 1 8.635e-06 1.105e-05 1.636e-05 0.00% Castro::create_source_corrector() 10 6.913e-06 9.181e-06 1.562e-05 0.00% Castro::post_timestep() 10 1.194e-05 1.349e-05 1.553e-05 0.00% Gravity::set_mass_offset() 10 9.033e-06 1.107e-05 1.4e-05 0.00% Castro::computeNewDt() 9 8.891e-06 1.041e-05 1.292e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.705e-06 5.264e-06 9.066e-06 0.00% Castro::retry_advance_ctu() 10 6.686e-06 7.37e-06 9.021e-06 0.00% Castro::FluxRegCrseInit 10 6.293e-06 6.805e-06 7.589e-06 0.00% Amr::InitializeInit() 1 1.944e-06 2.714e-06 6.312e-06 0.00% Castro::post_init() 1 3.338e-06 4.329e-06 5.617e-06 0.00% Castro::computeInitialDt() 2 3.655e-06 4.617e-06 5.434e-06 0.00% Castro::post_regrid() 1 2.287e-06 3.172e-06 4.192e-06 0.00% Castro::FluxRegFineAdd() 10 2.011e-06 2.414e-06 2.926e-06 0.00% Amr::init() 1 2.285e-06 2.504e-06 2.814e-06 0.00% Amr::initialInit() 1 1.269e-06 1.705e-06 2.062e-06 0.00% DistributionMapping::Distribute() 1 9.17e-07 1.025e-06 1.213e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.578 3.578 3.579 100.00% Amr::coarseTimeStep() 10 3.358 3.358 3.358 93.83% Amr::timeStep() 10 3.345 3.346 3.347 93.51% Castro::advance() 10 3.328 3.329 3.331 93.06% Castro::subcycle_advance_ctu() 10 3.237 3.247 3.255 90.94% Castro::do_advance_ctu() 10 3.237 3.247 3.255 90.93% Castro::construct_ctu_hydro_source() 10 2.462 2.465 2.472 69.07% Gravity::make_radial_gravity() 21 0.3462 0.3592 0.3688 10.30% Gravity::get_new_grav_vector() 11 0.242 0.2463 0.2495 6.97% AmrLevel::FillPatch() 41 0.1826 0.2089 0.2267 6.33% Castro::construct_new_gravity() 10 0.2038 0.2074 0.2092 5.85% Castro::construct_old_gravity() 10 0.1906 0.1966 0.2032 5.68% Gravity::get_old_grav_vector() 10 0.1899 0.1959 0.2026 5.66% Amr::init() 1 0.2021 0.2024 0.2025 5.66% FillPatchIterator::Initialize 41 0.1539 0.1787 0.1956 5.47% Castro::initialize_do_advance() 10 0.1628 0.1778 0.1882 5.26% Amr::initialInit() 1 0.1818 0.1826 0.183 5.11% FillPatchIterator::FillFromLevel0() 41 0.113 0.1339 0.1497 4.18% FillPatchSingleLevel 41 0.1129 0.1338 0.1496 4.18% Amr::InitializeInit() 1 0.05976 0.1092 0.1394 3.89% Amr::defBaseLevel() 1 0.05976 0.1092 0.1394 3.89% Castro::expand_state() 10 0.1054 0.1225 0.1353 3.78% Castro::clean_state() 62 0.1156 0.1195 0.1234 3.45% Amr::FinalizeInit() 1 0.04337 0.07334 0.1232 3.44% Castro::initData() 1 0.04254 0.08997 0.1205 3.37% Castro::estTimeStep() 21 0.02546 0.0635 0.1204 3.36% FabArray::ParallelCopy() 41 0.07825 0.09826 0.1142 3.19% Castro::do_old_sources() 10 0.08776 0.09314 0.09754 2.73% FabArray::setVal() 143 0.06432 0.07502 0.09056 2.53% Castro::initialize_advance() 10 0.07052 0.07844 0.08867 2.48% check_for_negative_density() 10 0.01211 0.06287 0.0877 2.45% amrex::Copy() 193 0.06545 0.07616 0.08674 2.42% Castro::computeInitialDt() 2 0.002599 0.03286 0.08239 2.30% Castro::do_new_sources() 10 0.05972 0.06714 0.07814 2.18% FabArray::ParallelCopy_finish() 41 0.03596 0.05659 0.07747 2.16% Castro::computeTemp() 63 0.06848 0.07143 0.07554 2.11% Castro::reset_internal_energy(MultiFab) 63 0.0489 0.05135 0.05449 1.52% Castro::reset_internal_energy(Fab) 1008 0.04859 0.05104 0.05414 1.51% Castro::normalize_species() 62 0.04169 0.04283 0.04379 1.22% FabArray::ParallelCopy_nowait() 41 0.03662 0.04159 0.04352 1.22% Castro::post_init() 1 0.03954 0.04019 0.04083 1.14% StateDataPhysBCFunct::() 41 0.03237 0.03549 0.03877 1.08% StateData::FillBoundary(geom) 41 0.03229 0.0354 0.03868 1.08% Castro::construct_new_source() 50 0.02857 0.0317 0.03623 1.01% Amr::writePlotFile() 2 0.03006 0.0307 0.03157 0.88% Castro::finalize_do_advance() 10 0.01241 0.02369 0.03154 0.88% Castro::construct_new_gravity_source() 10 0.02228 0.02538 0.02967 0.83% Gravity::interpolate_monopole_grav() 21 0.02793 0.02854 0.02898 0.81% VisMF::Write(FabArray) 2 0.01384 0.01493 0.01878 0.52% Castro::post_timestep() 10 0.01601 0.0162 0.01641 0.46% Castro::Castro() 1 0.01082 0.01209 0.01486 0.42% Castro::apply_source_to_state() 20 0.01086 0.01276 0.01343 0.38% FabArray::Saxpy() 20 0.01082 0.01272 0.01338 0.37% FabArray::setDomainBndry() 41 0.008904 0.01103 0.0124 0.35% Castro::check_for_nan() 20 0.009726 0.01059 0.01152 0.32% MultiFab::contains_nan() 20 0.009706 0.01057 0.0115 0.32% Castro::initMFs() 1 0.007076 0.008268 0.01054 0.29% Castro::construct_old_source() 50 0.007123 0.009652 0.01031 0.29% Castro::construct_old_gravity_source() 10 0.007061 0.009579 0.01023 0.29% Castro::computeNewDt() 9 0.00863 0.00867 0.008696 0.24% AmrLevel::AmrLevel(dm) 1 0.005878 0.006817 0.008666 0.24% StateData::define() 4 0.00586 0.006798 0.008635 0.24% Castro::enforce_min_density() 62 0.005854 0.006081 0.006582 0.18% Castro::swap_state_time_levels() 10 0.003899 0.004683 0.005857 0.16% Castro::finalize_advance() 10 0.002952 0.003849 0.004893 0.14% Castro::post_regrid() 1 0.001536 0.001919 0.002939 0.08% Castro::buildMetrics() 1 0.001782 0.0021 0.002697 0.08% Amr::InitAmr() 1 0.0002742 0.0003863 0.0006573 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.354e-05 0.0003094 0.000428 0.01% DistributionMapping::LeastUsedCPUs() 1 8.633e-06 0.0003031 0.0004182 0.01% Castro::enforce_consistent_e() 1 7.761e-05 9.625e-05 0.0001427 0.00% FabArrayBase::getCPC() 41 6.418e-05 7.379e-05 8.292e-05 0.00% Amr::writeSmallPlotFile() 1 3.731e-05 5.094e-05 8.176e-05 0.00% Castro::enforce_speed_limit() 62 2.451e-05 2.752e-05 3.202e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.605e-05 2.975e-05 0.00% Gravity::swapTimeLevels() 10 1.078e-05 1.4e-05 1.931e-05 0.00% Amr::initSubcycle() 1 8.635e-06 1.105e-05 1.636e-05 0.00% Castro::create_source_corrector() 10 6.913e-06 9.181e-06 1.562e-05 0.00% Gravity::set_mass_offset() 10 9.033e-06 1.107e-05 1.4e-05 0.00% Castro::retry_advance_ctu() 10 6.686e-06 7.37e-06 9.021e-06 0.00% Castro::FluxRegCrseInit 10 6.293e-06 6.805e-06 7.589e-06 0.00% Castro::FluxRegFineAdd() 10 2.011e-06 2.414e-06 2.926e-06 0.00% DistributionMapping::Distribute() 1 9.17e-07 1.025e-06 1.213e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-27-gb523c3297d00) finalized