MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-29-gdbfa3b0daa3c) initialized Starting run at 05:22:40 UTC on 2023-07-20. Successfully read inputs file ... Castro git describe: 23.07-16-gcd2cd9695 AMReX git describe: 23.07-29-gdbfa3b0da Microphysics git describe: 23.07-34-g0ef8cc66 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016349331 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365125658 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352087367 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330738271 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329960456 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353921983 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350229338 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314118153 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314615804 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313683429 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313496514 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010188097 seconds Ending run at 05:22:44 UTC on 2023-07-20. Run time = 3.565544459 Run time without initialization = 3.354921791 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.565 ... 3.565 ... 3.566 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3022 2.3596 2.3897 67.02% Gravity::make_radial_gravity() 21 0.3207 0.3271 0.3376 9.47% Castro::estTimeStep() 21 0.03991 0.09484 0.1455 4.08% Castro::initData() 1 0.03907 0.08042 0.1375 3.86% check_for_negative_density() 10 0.03393 0.06408 0.1232 3.46% FabArray::setVal() 143 0.06482 0.07562 0.09003 2.52% amrex::Copy() 193 0.06628 0.07758 0.08485 2.38% FabArray::ParallelCopy_finish() 41 0.03447 0.05981 0.08474 2.38% Castro::reset_internal_energy(Fab) 1008 0.0477 0.04938 0.05153 1.45% Castro::normalize_species() 62 0.04093 0.04229 0.04387 1.23% FabArray::ParallelCopy_nowait() 41 0.03546 0.04099 0.0431 1.21% FillPatchIterator::Initialize 41 0.02987 0.03395 0.03821 1.07% StateData::FillBoundary(geom) 41 0.03256 0.03516 0.03632 1.02% Castro::construct_new_gravity_source() 10 0.02219 0.02576 0.03079 0.86% Gravity::interpolate_monopole_grav() 21 0.02816 0.02858 0.03055 0.86% Castro::initialize_do_advance() 10 0.01292 0.01852 0.02361 0.66% Castro::computeTemp() 63 0.01772 0.01899 0.02051 0.58% VisMF::Write(FabArray) 2 0.01367 0.01431 0.017 0.48% Castro::initialize_advance() 10 0.008827 0.0118 0.01568 0.44% FabArray::Saxpy() 20 0.01092 0.01315 0.01421 0.40% FabArray::setDomainBndry() 41 0.00887 0.01109 0.01226 0.34% MultiFab::contains_nan() 20 0.009526 0.01064 0.0117 0.33% Amr::writePlotFile() 2 0.006936 0.01003 0.01079 0.30% Castro::construct_old_gravity_source() 10 0.007134 0.009622 0.01026 0.29% Castro::initMFs() 1 0.007146 0.007601 0.00893 0.25% StateData::define() 4 0.005885 0.00611 0.00676 0.19% Castro::construct_new_source() 50 0.005784 0.006204 0.00654 0.18% Castro::enforce_min_density() 62 0.005685 0.005973 0.00625 0.18% main() 1 0.005511 0.005886 0.006042 0.17% Castro::swap_state_time_levels() 10 0.003414 0.004591 0.004836 0.14% Amr::coarseTimeStep() 10 0.001219 0.002909 0.004158 0.12% Gravity::get_new_grav_vector() 11 0.003165 0.00356 0.003901 0.11% Gravity::get_old_grav_vector() 10 0.001521 0.001898 0.002343 0.07% Castro::finalize_do_advance() 10 0.0005867 0.001801 0.002304 0.06% Castro::buildMetrics() 1 0.001695 0.001765 0.001967 0.06% AmrLevel::FillPatch() 41 0.0009934 0.001185 0.001398 0.04% Amr::InitAmr() 1 0.0002706 0.0002986 0.0004204 0.01% Amr::timeStep() 10 0.0001544 0.0002291 0.0004095 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002816 0.0003051 0.0003464 0.01% Castro::do_advance_ctu() 10 0.0001339 0.0001841 0.0002128 0.01% Castro::clean_state() 62 0.0001382 0.0001503 0.0001757 0.00% DistributionMapping::LeastUsedCPUs() 1 7.407e-06 0.0001332 0.0001589 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001002 0.0001097 0.0001329 0.00% StateDataPhysBCFunct::() 41 7.762e-05 9.911e-05 0.000116 0.00% Castro::do_old_sources() 10 7.214e-05 9.469e-05 0.0001108 0.00% Castro::construct_old_source() 50 5.989e-05 7.737e-05 0.0001088 0.00% Castro::finalize_advance() 10 7.74e-05 9.599e-05 0.0001076 0.00% Castro::enforce_consistent_e() 1 7.755e-05 8.655e-05 0.0001068 0.00% Castro::Castro() 1 5.441e-05 6.665e-05 9.319e-05 0.00% FabArray::ParallelCopy() 41 6.458e-05 7.492e-05 8.587e-05 0.00% FillPatchSingleLevel 41 6.81e-05 7.266e-05 8.503e-05 0.00% FabArrayBase::getCPC() 41 4.151e-05 5.003e-05 7.279e-05 0.00% Castro::do_new_sources() 10 5.263e-05 6.463e-05 7.185e-05 0.00% Amr::FinalizeInit() 1 3.879e-06 1.265e-05 6.94e-05 0.00% Amr::writeSmallPlotFile() 1 2.74e-05 4.145e-05 6.433e-05 0.00% Castro::advance() 10 3.922e-05 4.804e-05 6.353e-05 0.00% Castro::subcycle_advance_ctu() 10 3.914e-05 5.367e-05 6.236e-05 0.00% Castro::apply_source_to_state() 20 3.699e-05 4.51e-05 5.821e-05 0.00% Castro::construct_old_gravity() 10 3.805e-05 4.606e-05 5.648e-05 0.00% Amr::defBaseLevel() 1 2.458e-05 3.385e-05 4.663e-05 0.00% Castro::construct_new_gravity() 10 3.472e-05 4.021e-05 4.566e-05 0.00% FabArrayBase::CPC::define() 2 1.947e-05 2.511e-05 3.689e-05 0.00% Castro::enforce_speed_limit() 62 2.427e-05 2.766e-05 3.473e-05 0.00% Castro::expand_state() 10 2.085e-05 2.525e-05 3.104e-05 0.00% Castro::check_for_nan() 20 1.819e-05 2.13e-05 2.79e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.326e-05 1.879e-05 2.25e-05 0.00% Gravity::swapTimeLevels() 10 1.199e-05 1.472e-05 2.138e-05 0.00% Castro::post_timestep() 10 1.174e-05 1.461e-05 1.699e-05 0.00% Gravity::set_mass_offset() 10 8.969e-06 1.129e-05 1.57e-05 0.00% Castro::computeNewDt() 9 9.113e-06 1.083e-05 1.347e-05 0.00% Castro::create_source_corrector() 10 7.93e-06 9.439e-06 1.142e-05 0.00% Amr::initSubcycle() 1 8.7e-06 9.303e-06 1.023e-05 0.00% Castro::retry_advance_ctu() 10 6.599e-06 7.697e-06 9.406e-06 0.00% Amr::initialInit() 1 1.379e-06 2.758e-06 8.882e-06 0.00% Castro::post_init() 1 2.981e-06 4.42e-06 8.519e-06 0.00% Castro::FluxRegCrseInit 10 6.76e-06 7.38e-06 8.349e-06 0.00% Amr::init() 1 1.703e-06 2.889e-06 7.632e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.884e-06 4.825e-06 5.888e-06 0.00% Castro::computeInitialDt() 2 3.459e-06 4.331e-06 5.415e-06 0.00% Amr::InitializeInit() 1 1.692e-06 2.46e-06 4.883e-06 0.00% Castro::post_regrid() 1 2.098e-06 2.846e-06 3.537e-06 0.00% Castro::FluxRegFineAdd() 10 1.795e-06 2.307e-06 2.762e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.018e-06 1.163e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.565 3.565 3.566 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 93.64% Amr::timeStep() 10 3.325 3.326 3.328 93.33% Castro::advance() 10 3.309 3.31 3.311 92.86% Castro::subcycle_advance_ctu() 10 3.217 3.228 3.236 90.76% Castro::do_advance_ctu() 10 3.217 3.228 3.236 90.75% Castro::construct_ctu_hydro_source() 10 2.442 2.444 2.446 68.61% Gravity::make_radial_gravity() 21 0.3374 0.3436 0.3515 9.86% Gravity::get_new_grav_vector() 11 0.23 0.2313 0.2322 6.51% AmrLevel::FillPatch() 41 0.1915 0.2118 0.2282 6.40% Amr::init() 1 0.21 0.2102 0.2102 5.89% Castro::construct_old_gravity() 10 0.1923 0.1986 0.2052 5.76% Gravity::get_old_grav_vector() 10 0.1917 0.1978 0.2046 5.74% Castro::construct_new_gravity() 10 0.2025 0.203 0.2034 5.70% FillPatchIterator::Initialize 41 0.1613 0.1814 0.1955 5.48% Amr::initialInit() 1 0.193 0.1933 0.1936 5.43% Castro::initialize_do_advance() 10 0.1669 0.1781 0.1907 5.35% Amr::InitializeInit() 1 0.06077 0.1025 0.1612 4.52% Amr::defBaseLevel() 1 0.06076 0.1025 0.1612 4.52% FillPatchIterator::FillFromLevel0() 41 0.1116 0.1364 0.1533 4.30% FillPatchSingleLevel 41 0.1115 0.1363 0.1531 4.29% Castro::estTimeStep() 21 0.03991 0.09484 0.1455 4.08% Castro::initData() 1 0.04311 0.08448 0.1417 3.97% Castro::expand_state() 10 0.1077 0.1228 0.1365 3.83% Amr::FinalizeInit() 1 0.03236 0.09075 0.1323 3.71% check_for_negative_density() 10 0.03393 0.06408 0.1232 3.46% FabArray::ParallelCopy() 41 0.076 0.101 0.1204 3.38% Castro::clean_state() 62 0.1127 0.1162 0.1201 3.37% Castro::computeInitialDt() 2 0.002417 0.0611 0.1029 2.89% Castro::do_old_sources() 10 0.08895 0.0927 0.09701 2.72% FabArray::setVal() 143 0.06482 0.07562 0.09003 2.52% Castro::initialize_advance() 10 0.07031 0.07812 0.08884 2.49% amrex::Copy() 193 0.06628 0.07758 0.08485 2.38% FabArray::ParallelCopy_finish() 41 0.03447 0.05981 0.08474 2.38% Castro::do_new_sources() 10 0.05889 0.06815 0.08176 2.29% Castro::computeTemp() 63 0.06582 0.06867 0.07155 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04799 0.04968 0.05184 1.45% Castro::reset_internal_energy(Fab) 1008 0.0477 0.04938 0.05153 1.45% Castro::normalize_species() 62 0.04093 0.04229 0.04387 1.23% FabArray::ParallelCopy_nowait() 41 0.03555 0.04107 0.04317 1.21% Castro::construct_new_source() 50 0.02838 0.03197 0.0372 1.04% Castro::finalize_do_advance() 10 0.01315 0.02696 0.03697 1.04% StateDataPhysBCFunct::() 41 0.03267 0.03526 0.03642 1.02% StateData::FillBoundary(geom) 41 0.03256 0.03516 0.03632 1.02% Castro::construct_new_gravity_source() 10 0.02219 0.02576 0.03079 0.86% Gravity::interpolate_monopole_grav() 21 0.02816 0.02858 0.03055 0.86% Castro::post_init() 1 0.02905 0.02926 0.02953 0.83% Amr::writePlotFile() 2 0.02678 0.02715 0.02741 0.77% VisMF::Write(FabArray) 2 0.01367 0.01431 0.017 0.48% Castro::post_timestep() 10 0.0152 0.0158 0.01659 0.47% Castro::apply_source_to_state() 20 0.01097 0.01319 0.01424 0.40% FabArray::Saxpy() 20 0.01092 0.01315 0.01421 0.40% Castro::Castro() 1 0.01148 0.01176 0.01256 0.35% FabArray::setDomainBndry() 41 0.00887 0.01109 0.01226 0.34% Castro::check_for_nan() 20 0.009546 0.01066 0.01172 0.33% MultiFab::contains_nan() 20 0.009526 0.01064 0.0117 0.33% Castro::construct_old_source() 50 0.007213 0.009699 0.01033 0.29% Castro::construct_old_gravity_source() 10 0.007134 0.009622 0.01026 0.29% Castro::initMFs() 1 0.007146 0.007601 0.00893 0.25% Castro::computeNewDt() 9 0.008586 0.008593 0.008598 0.24% AmrLevel::AmrLevel(dm) 1 0.005903 0.006129 0.006781 0.19% StateData::define() 4 0.005885 0.00611 0.00676 0.19% Castro::enforce_min_density() 62 0.005685 0.005973 0.00625 0.18% Castro::swap_state_time_levels() 10 0.003414 0.004591 0.004836 0.14% Castro::finalize_advance() 10 0.002942 0.003787 0.004657 0.13% Castro::buildMetrics() 1 0.001814 0.001899 0.002121 0.06% Castro::post_regrid() 1 0.001557 0.001652 0.001954 0.05% Amr::InitAmr() 1 0.0002797 0.0003079 0.0004295 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.222e-05 0.0001391 0.0001655 0.00% DistributionMapping::LeastUsedCPUs() 1 7.407e-06 0.0001332 0.0001589 0.00% Castro::enforce_consistent_e() 1 7.755e-05 8.655e-05 0.0001068 0.00% FabArrayBase::getCPC() 41 6.399e-05 7.514e-05 9.884e-05 0.00% Amr::writeSmallPlotFile() 1 2.74e-05 4.145e-05 6.433e-05 0.00% FabArrayBase::CPC::define() 2 1.947e-05 2.511e-05 3.689e-05 0.00% Castro::enforce_speed_limit() 62 2.427e-05 2.766e-05 3.473e-05 0.00% Gravity::swapTimeLevels() 10 1.199e-05 1.472e-05 2.138e-05 0.00% Gravity::set_mass_offset() 10 8.969e-06 1.129e-05 1.57e-05 0.00% Castro::create_source_corrector() 10 7.93e-06 9.439e-06 1.142e-05 0.00% Amr::initSubcycle() 1 8.7e-06 9.303e-06 1.023e-05 0.00% Castro::retry_advance_ctu() 10 6.599e-06 7.697e-06 9.406e-06 0.00% Castro::FluxRegCrseInit 10 6.76e-06 7.38e-06 8.349e-06 0.00% Castro::FluxRegFineAdd() 10 1.795e-06 2.307e-06 2.762e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.018e-06 1.163e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-29-gdbfa3b0daa3c) finalized