MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (23.07-32-g587542a395e4) initialized
Starting run at 17:18:56 UTC on 2023-07-21.
Successfully read inputs file ...
Castro git describe: 23.07-17-g6ddff09fd
AMReX git describe: 23.07-32-g587542a39
Microphysics git describe: 23.07-37-g5a7415fe
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.015306108 seconds
[Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.361153877
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.345933025
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.33121537
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.331589843
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.341880721
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.373647139
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.315140302
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.315332442
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.317042957
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.315337151
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.010584247 seconds
Ending run at 17:19:00 UTC on 2023-07-21.
Run time = 3.545750759
Run time without initialization = 3.366564175
Average number of zones advanced per microsecond: 0.779
Average number of zones advanced per microsecond per rank: 0.097
TinyProfiler total time across processes [min...avg...max]: 3.544 ... 3.545 ... 3.546
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.2641 2.3619 2.4010 67.71%
Gravity::make_radial_gravity() 21 0.3105 0.3177 0.3357 9.47%
check_for_negative_density() 10 0.02761 0.0693 0.1698 4.79%
Castro::initData() 1 0.03844 0.07751 0.1137 3.21%
Castro::estTimeStep() 21 0.03081 0.07065 0.113 3.19%
FabArray::ParallelCopy_finish() 41 0.03443 0.06862 0.1076 3.04%
FabArray::setVal() 143 0.06278 0.07372 0.09029 2.55%
amrex::Copy() 193 0.06494 0.07791 0.08732 2.46%
Castro::reset_internal_energy(Fab) 1008 0.04793 0.04977 0.05126 1.45%
FabArray::ParallelCopy_nowait() 41 0.03505 0.04099 0.04317 1.22%
Castro::normalize_species() 62 0.04085 0.04218 0.04306 1.21%
FillPatchIterator::Initialize 41 0.02801 0.0339 0.04096 1.16%
StateData::FillBoundary(geom) 41 0.03349 0.03717 0.04051 1.14%
Gravity::interpolate_monopole_grav() 21 0.02788 0.02823 0.02859 0.81%
Castro::construct_new_gravity_source() 10 0.0214 0.02358 0.02529 0.71%
Castro::initialize_do_advance() 10 0.01184 0.01923 0.02494 0.70%
Castro::computeTemp() 63 0.0193 0.01968 0.02007 0.57%
VisMF::Write(FabArray) 2 0.01402 0.01452 0.01761 0.50%
Castro::initialize_advance() 10 0.004414 0.01038 0.01452 0.41%
FabArray::Saxpy() 20 0.01072 0.01287 0.01379 0.39%
FabArray::setDomainBndry() 41 0.008434 0.01112 0.01232 0.35%
MultiFab::contains_nan() 20 0.009406 0.01039 0.01125 0.32%
Castro::construct_old_gravity_source() 10 0.006597 0.009395 0.01003 0.28%
Amr::writePlotFile() 2 0.006505 0.008825 0.009277 0.26%
Castro::initMFs() 1 0.007046 0.007518 0.008855 0.25%
Castro::construct_new_source() 50 0.005703 0.0065 0.006921 0.20%
main() 1 0.005316 0.006089 0.006803 0.19%
StateData::define() 4 0.005814 0.00606 0.006719 0.19%
Amr::coarseTimeStep() 10 0.001424 0.005309 0.006514 0.18%
Castro::enforce_min_density() 62 0.005857 0.006134 0.006439 0.18%
Castro::swap_state_time_levels() 10 0.002224 0.004544 0.004926 0.14%
Gravity::get_new_grav_vector() 11 0.003316 0.00386 0.004306 0.12%
Gravity::get_old_grav_vector() 10 0.001559 0.001952 0.002243 0.06%
Castro::finalize_do_advance() 10 0.000624 0.001684 0.002048 0.06%
Castro::buildMetrics() 1 0.001684 0.00176 0.001954 0.06%
AmrLevel::FillPatch() 41 0.0009363 0.001118 0.001301 0.04%
Amr::InitAmr() 1 0.0002694 0.0003119 0.0005562 0.02%
Amr::timeStep() 10 0.0002272 0.0002835 0.0004122 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002967 0.000315 0.0003563 0.01%
DistributionMapping::LeastUsedCPUs() 1 9.196e-06 0.0002751 0.0003213 0.01%
Castro::computeNewDt() 9 1.23e-05 8.059e-05 0.0002575 0.01%
Castro::do_advance_ctu() 10 0.0001673 0.0002028 0.0002388 0.01%
Castro::finalize_advance() 10 8.925e-05 0.0001119 0.0002034 0.01%
Castro::clean_state() 62 0.0001446 0.0001565 0.0001837 0.01%
FillPatchIterator::FillFromLevel0() 41 0.0001048 0.0001227 0.0001521 0.00%
Castro::enforce_consistent_e() 1 7.932e-05 9.078e-05 0.0001177 0.00%
StateDataPhysBCFunct::() 41 8.793e-05 0.0001005 0.000114 0.00%
Amr::FinalizeInit() 1 3.244e-06 1.864e-05 0.0001087 0.00%
Castro::do_old_sources() 10 8.83e-05 9.463e-05 0.0001037 0.00%
FabArray::ParallelCopy() 41 6.228e-05 7.8e-05 8.927e-05 0.00%
Castro::Castro() 1 5.945e-05 6.906e-05 8.711e-05 0.00%
Castro::construct_old_source() 50 5.983e-05 7.29e-05 8.107e-05 0.00%
FabArrayBase::getCPC() 41 4.273e-05 5.463e-05 7.769e-05 0.00%
FillPatchSingleLevel 41 6.511e-05 7.012e-05 7.379e-05 0.00%
Castro::advance() 10 4.561e-05 5.874e-05 7.15e-05 0.00%
Castro::construct_old_gravity() 10 4.401e-05 5.372e-05 7.102e-05 0.00%
Castro::do_new_sources() 10 5.865e-05 6.383e-05 6.95e-05 0.00%
Castro::subcycle_advance_ctu() 10 5.227e-05 5.885e-05 6.452e-05 0.00%
Amr::writeSmallPlotFile() 1 2.829e-05 5.238e-05 6.45e-05 0.00%
Castro::construct_new_gravity() 10 3.785e-05 4.363e-05 5.767e-05 0.00%
Castro::apply_source_to_state() 20 4.112e-05 4.721e-05 5.637e-05 0.00%
Amr::defBaseLevel() 1 2.42e-05 3.227e-05 4.814e-05 0.00%
FabArrayBase::CPC::define() 2 2.004e-05 2.488e-05 3.623e-05 0.00%
Castro::enforce_speed_limit() 62 2.776e-05 3.01e-05 3.276e-05 0.00%
Castro::expand_state() 10 2.095e-05 2.609e-05 2.994e-05 0.00%
Castro::post_timestep() 10 1.386e-05 1.79e-05 2.881e-05 0.00%
Castro::check_for_nan() 20 2.037e-05 2.325e-05 2.564e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.607e-05 1.856e-05 2.179e-05 0.00%
Castro::retry_advance_ctu() 10 7.578e-06 9.838e-06 2.061e-05 0.00%
Castro::FluxRegCrseInit 10 7.278e-06 9.661e-06 2.052e-05 0.00%
Gravity::set_mass_offset() 10 1.015e-05 1.434e-05 1.835e-05 0.00%
Gravity::swapTimeLevels() 10 1.263e-05 1.417e-05 1.582e-05 0.00%
Amr::initSubcycle() 1 8.53e-06 9.341e-06 1.117e-05 0.00%
Castro::create_source_corrector() 10 8.244e-06 8.808e-06 1.015e-05 0.00%
Amr::initialInit() 1 1.282e-06 2.256e-06 7.43e-06 0.00%
Amr::InitializeInit() 1 1.837e-06 2.543e-06 6.183e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.747e-06 4.257e-06 5.745e-06 0.00%
Castro::computeInitialDt() 2 3.564e-06 4.638e-06 5.527e-06 0.00%
Castro::post_regrid() 1 1.769e-06 3.52e-06 5.397e-06 0.00%
Castro::post_init() 1 3.374e-06 4.25e-06 5.132e-06 0.00%
Amr::init() 1 1.76e-06 2.354e-06 2.874e-06 0.00%
Castro::FluxRegFineAdd() 10 2.197e-06 2.4e-06 2.7e-06 0.00%
DistributionMapping::Distribute() 1 9.15e-07 1.028e-06 1.148e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.544 3.545 3.546 100.00%
Amr::coarseTimeStep() 10 3.349 3.349 3.349 94.46%
Amr::timeStep() 10 3.327 3.329 3.333 93.99%
Castro::advance() 10 3.311 3.312 3.315 93.48%
Castro::subcycle_advance_ctu() 10 3.22 3.234 3.243 91.46%
Castro::do_advance_ctu() 10 3.22 3.234 3.243 91.46%
Castro::construct_ctu_hydro_source() 10 2.447 2.452 2.454 69.22%
Gravity::make_radial_gravity() 21 0.3263 0.3336 0.3488 9.84%
AmrLevel::FillPatch() 41 0.1888 0.2225 0.2452 6.91%
Gravity::get_new_grav_vector() 11 0.2181 0.2197 0.2208 6.23%
FillPatchIterator::Initialize 41 0.1604 0.1922 0.2133 6.02%
Castro::construct_old_gravity() 10 0.1926 0.1987 0.213 6.01%
Gravity::get_old_grav_vector() 10 0.1921 0.1979 0.2124 5.99%
Castro::initialize_do_advance() 10 0.1731 0.1894 0.2022 5.70%
Castro::construct_new_gravity() 10 0.1943 0.1954 0.1961 5.53%
Amr::init() 1 0.1785 0.1787 0.1788 5.04%
FillPatchIterator::FillFromLevel0() 41 0.118 0.1472 0.1769 4.99%
FillPatchSingleLevel 41 0.1178 0.1471 0.1767 4.98%
check_for_negative_density() 10 0.02761 0.0693 0.1698 4.79%
Amr::initialInit() 1 0.163 0.1634 0.1636 4.61%
Castro::expand_state() 10 0.1131 0.133 0.1481 4.18%
FabArray::ParallelCopy() 41 0.07715 0.1098 0.1429 4.03%
Amr::InitializeInit() 1 0.06024 0.09954 0.1356 3.82%
Amr::defBaseLevel() 1 0.06023 0.09954 0.1356 3.82%
Castro::clean_state() 62 0.1139 0.1173 0.1194 3.37%
Castro::initData() 1 0.0426 0.08148 0.1179 3.32%
Castro::estTimeStep() 21 0.03081 0.07065 0.113 3.19%
FabArray::ParallelCopy_finish() 41 0.03443 0.06862 0.1076 3.04%
Amr::FinalizeInit() 1 0.02769 0.06388 0.1034 2.92%
Castro::do_old_sources() 10 0.09218 0.09763 0.1025 2.89%
FabArray::setVal() 143 0.06278 0.07372 0.09029 2.55%
Castro::initialize_advance() 10 0.06464 0.07495 0.08874 2.50%
amrex::Copy() 193 0.06494 0.07791 0.08732 2.46%
Castro::computeInitialDt() 2 0.001999 0.03803 0.07738 2.18%
Castro::computeTemp() 63 0.06786 0.06976 0.07166 2.02%
Castro::do_new_sources() 10 0.06053 0.06404 0.0689 1.94%
Castro::reset_internal_energy(MultiFab) 63 0.04829 0.05008 0.05159 1.45%
Castro::reset_internal_energy(Fab) 1008 0.04793 0.04977 0.05126 1.45%
FabArray::ParallelCopy_nowait() 41 0.03516 0.04107 0.04323 1.22%
Castro::normalize_species() 62 0.04085 0.04218 0.04306 1.21%
StateDataPhysBCFunct::() 41 0.0336 0.03727 0.04061 1.15%
StateData::FillBoundary(geom) 41 0.03349 0.03717 0.04051 1.14%
Castro::construct_new_source() 50 0.0271 0.03008 0.03201 0.90%
Gravity::interpolate_monopole_grav() 21 0.02788 0.02823 0.02859 0.81%
Amr::writePlotFile() 2 0.02586 0.02602 0.02618 0.74%
Castro::post_init() 1 0.02499 0.02526 0.02539 0.72%
Castro::construct_new_gravity_source() 10 0.0214 0.02358 0.02529 0.71%
Castro::finalize_do_advance() 10 0.01582 0.02051 0.02345 0.66%
Castro::post_timestep() 10 0.01579 0.01628 0.01797 0.51%
VisMF::Write(FabArray) 2 0.01402 0.01452 0.01761 0.50%
Castro::computeNewDt() 9 0.0128 0.01388 0.0142 0.40%
Castro::apply_source_to_state() 20 0.01076 0.01292 0.01384 0.39%
FabArray::Saxpy() 20 0.01072 0.01287 0.01379 0.39%
Castro::Castro() 1 0.01135 0.01166 0.01244 0.35%
FabArray::setDomainBndry() 41 0.008434 0.01112 0.01232 0.35%
Castro::check_for_nan() 20 0.009426 0.01041 0.01128 0.32%
MultiFab::contains_nan() 20 0.009406 0.01039 0.01125 0.32%
Castro::construct_old_source() 50 0.006657 0.009468 0.01011 0.29%
Castro::construct_old_gravity_source() 10 0.006597 0.009395 0.01003 0.28%
Castro::initMFs() 1 0.007046 0.007518 0.008855 0.25%
AmrLevel::AmrLevel(dm) 1 0.00583 0.006078 0.00674 0.19%
StateData::define() 4 0.005814 0.00606 0.006719 0.19%
Castro::enforce_min_density() 62 0.005857 0.006134 0.006439 0.18%
Castro::finalize_advance() 10 0.002981 0.003751 0.005568 0.16%
Castro::swap_state_time_levels() 10 0.002224 0.004544 0.004926 0.14%
Castro::buildMetrics() 1 0.001813 0.001891 0.002108 0.06%
Castro::post_regrid() 1 0.001516 0.001615 0.001681 0.05%
Amr::InitAmr() 1 0.0002786 0.0003212 0.0005674 0.02%
DistributionMapping::SFCProcessorMapDoIt() 1 1.427e-05 0.0002804 0.0003281 0.01%
DistributionMapping::LeastUsedCPUs() 1 9.196e-06 0.0002751 0.0003213 0.01%
Castro::enforce_consistent_e() 1 7.932e-05 9.078e-05 0.0001177 0.00%
FabArrayBase::getCPC() 41 6.661e-05 7.95e-05 0.0001073 0.00%
Amr::writeSmallPlotFile() 1 2.829e-05 5.238e-05 6.45e-05 0.00%
FabArrayBase::CPC::define() 2 2.004e-05 2.488e-05 3.623e-05 0.00%
Castro::enforce_speed_limit() 62 2.776e-05 3.01e-05 3.276e-05 0.00%
Castro::retry_advance_ctu() 10 7.578e-06 9.838e-06 2.061e-05 0.00%
Castro::FluxRegCrseInit 10 7.278e-06 9.661e-06 2.052e-05 0.00%
Gravity::set_mass_offset() 10 1.015e-05 1.434e-05 1.835e-05 0.00%
Gravity::swapTimeLevels() 10 1.263e-05 1.417e-05 1.582e-05 0.00%
Amr::initSubcycle() 1 8.53e-06 9.341e-06 1.117e-05 0.00%
Castro::create_source_corrector() 10 8.244e-06 8.808e-06 1.015e-05 0.00%
Castro::FluxRegFineAdd() 10 2.197e-06 2.4e-06 2.7e-06 0.00%
DistributionMapping::Distribute() 1 9.15e-07 1.028e-06 1.148e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
Pinned Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize() 8 8 29 B 34 B 46 B 8192 KiB 8192 KiB 8192 KiB
---------------------------------------------------------------------------------------------------------------------
AMReX (23.07-32-g587542a395e4) finalized