MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-32-g587542a395e4) initialized Starting run at 05:35:50 UTC on 2023-07-21. Successfully read inputs file ... Castro git describe: 23.07-16-gcd2cd9695 AMReX git describe: 23.07-32-g587542a39 Microphysics git describe: 23.07-34-g0ef8cc66 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01678939 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365150412 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352037563 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.350296209 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340484461 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363246337 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.354918426 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319929662 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318632047 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.320159549 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.319619921 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010378353 seconds Ending run at 05:35:54 UTC on 2023-07-21. Run time = 3.605165412 Run time without initialization = 3.422603021 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.604 ... 3.605 ... 3.605 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3067 2.3773 2.4739 68.62% Gravity::make_radial_gravity() 21 0.3213 0.3306 0.3416 9.47% check_for_negative_density() 10 0.004059 0.1021 0.1767 4.90% Castro::initData() 1 0.03861 0.07759 0.1142 3.17% Castro::estTimeStep() 21 0.02332 0.06845 0.09662 2.68% FabArray::setVal() 143 0.06591 0.07696 0.09126 2.53% amrex::Copy() 193 0.0683 0.07919 0.08886 2.46% FabArray::ParallelCopy_finish() 41 0.03616 0.05687 0.07046 1.95% Castro::reset_internal_energy(Fab) 1008 0.04868 0.05089 0.05359 1.49% FabArray::ParallelCopy_nowait() 41 0.03659 0.04198 0.04422 1.23% Castro::normalize_species() 62 0.04072 0.04202 0.04388 1.22% StateData::FillBoundary(geom) 41 0.03481 0.03722 0.03979 1.10% FillPatchIterator::Initialize 41 0.02994 0.03504 0.03721 1.03% Castro::construct_new_gravity_source() 10 0.02212 0.0253 0.02939 0.82% Gravity::interpolate_monopole_grav() 21 0.02808 0.02831 0.02874 0.80% Castro::initialize_do_advance() 10 0.01294 0.019 0.02452 0.68% Castro::computeTemp() 63 0.0194 0.01997 0.02061 0.57% VisMF::Write(FabArray) 2 0.01322 0.01415 0.01747 0.48% Castro::initialize_advance() 10 0.009659 0.01246 0.01553 0.43% FabArray::Saxpy() 20 0.01229 0.01293 0.01332 0.37% FabArray::setDomainBndry() 41 0.008523 0.01179 0.01314 0.36% MultiFab::contains_nan() 20 0.009978 0.01082 0.01161 0.32% Amr::writePlotFile() 2 0.006923 0.0104 0.0115 0.32% Castro::construct_old_gravity_source() 10 0.006928 0.009707 0.01048 0.29% Castro::initMFs() 1 0.007109 0.007454 0.009148 0.25% main() 1 0.005541 0.006416 0.007041 0.20% StateData::define() 4 0.005886 0.006045 0.00671 0.19% Castro::enforce_min_density() 62 0.005777 0.006147 0.006592 0.18% Castro::construct_new_source() 50 0.005822 0.006194 0.00644 0.18% Gravity::get_new_grav_vector() 11 0.003034 0.004255 0.006091 0.17% Castro::swap_state_time_levels() 10 0.003516 0.004816 0.005367 0.15% Amr::coarseTimeStep() 10 0.0008406 0.002606 0.003695 0.10% Gravity::get_old_grav_vector() 10 0.001445 0.002 0.002338 0.06% Castro::finalize_do_advance() 10 0.0008054 0.001674 0.001993 0.06% Castro::buildMetrics() 1 0.001651 0.001711 0.001914 0.05% AmrLevel::FillPatch() 41 0.00114 0.001273 0.001406 0.04% Amr::InitAmr() 1 0.0002701 0.0003034 0.0004726 0.01% Amr::timeStep() 10 0.0001782 0.0002477 0.0004698 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002852 0.0003024 0.0003275 0.01% Castro::clean_state() 62 0.0001459 0.000197 0.0002425 0.01% Castro::do_advance_ctu() 10 0.0001616 0.0001941 0.0002331 0.01% DistributionMapping::LeastUsedCPUs() 1 7.108e-06 0.0001802 0.000207 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001055 0.0001207 0.0001544 0.00% Castro::finalize_advance() 10 9.577e-05 0.0001113 0.0001248 0.00% StateDataPhysBCFunct::() 41 8.683e-05 9.822e-05 0.0001231 0.00% Castro::Castro() 1 5.615e-05 8.071e-05 0.000118 0.00% Castro::do_old_sources() 10 7.723e-05 9.593e-05 0.0001168 0.00% Castro::enforce_consistent_e() 1 7.267e-05 8.262e-05 9.573e-05 0.00% Amr::FinalizeInit() 1 4.273e-06 1.618e-05 9.396e-05 0.00% FabArray::ParallelCopy() 41 6.721e-05 7.66e-05 9.252e-05 0.00% Castro::construct_old_source() 50 6.373e-05 7.404e-05 8.334e-05 0.00% FillPatchSingleLevel 41 6.263e-05 6.941e-05 8.132e-05 0.00% Castro::do_new_sources() 10 5.712e-05 6.553e-05 7.249e-05 0.00% FabArrayBase::getCPC() 41 4.836e-05 5.628e-05 6.92e-05 0.00% Castro::subcycle_advance_ctu() 10 5.171e-05 5.897e-05 6.669e-05 0.00% Amr::writeSmallPlotFile() 1 2.679e-05 5.251e-05 6.216e-05 0.00% Castro::construct_old_gravity() 10 4.115e-05 4.97e-05 6.013e-05 0.00% Castro::advance() 10 4.478e-05 4.828e-05 5.441e-05 0.00% Castro::apply_source_to_state() 20 3.93e-05 4.48e-05 5.131e-05 0.00% Amr::defBaseLevel() 1 2.482e-05 3.54e-05 4.64e-05 0.00% Castro::construct_new_gravity() 10 3.669e-05 3.983e-05 4.552e-05 0.00% Castro::enforce_speed_limit() 62 2.702e-05 3.211e-05 3.809e-05 0.00% FabArrayBase::CPC::define() 2 2.117e-05 2.483e-05 3.19e-05 0.00% Castro::expand_state() 10 1.955e-05 2.46e-05 2.777e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.289e-05 1.784e-05 2.685e-05 0.00% Castro::check_for_nan() 20 2.214e-05 2.37e-05 2.509e-05 0.00% Gravity::swapTimeLevels() 10 1.293e-05 1.491e-05 1.635e-05 0.00% Gravity::set_mass_offset() 10 9.606e-06 1.199e-05 1.59e-05 0.00% Castro::post_timestep() 10 1.387e-05 1.475e-05 1.54e-05 0.00% Castro::computeNewDt() 9 1.149e-05 1.243e-05 1.418e-05 0.00% Castro::create_source_corrector() 10 8.24e-06 9.357e-06 1.062e-05 0.00% Amr::initSubcycle() 1 8.767e-06 9.192e-06 9.849e-06 0.00% Amr::initialInit() 1 1.275e-06 3.556e-06 9.228e-06 0.00% Castro::retry_advance_ctu() 10 7.071e-06 7.696e-06 8.704e-06 0.00% Castro::FluxRegCrseInit 10 6.736e-06 7.586e-06 8.388e-06 0.00% Castro::computeInitialDt() 2 4.113e-06 4.989e-06 6.635e-06 0.00% Amr::InitializeInit() 1 2.018e-06 2.859e-06 5.813e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.562e-06 4.197e-06 5.647e-06 0.00% Castro::post_init() 1 3.184e-06 4.326e-06 5.085e-06 0.00% Castro::post_regrid() 1 2.52e-06 3.531e-06 4.632e-06 0.00% Amr::init() 1 1.903e-06 2.779e-06 3.649e-06 0.00% Castro::FluxRegFineAdd() 10 2.01e-06 2.304e-06 2.577e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.002e-06 1.103e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.604 3.605 3.605 100.00% Amr::coarseTimeStep() 10 3.405 3.405 3.405 94.45% Amr::timeStep() 10 3.392 3.393 3.395 94.16% Castro::advance() 10 3.376 3.377 3.378 93.69% Castro::subcycle_advance_ctu() 10 3.284 3.293 3.302 91.59% Castro::do_advance_ctu() 10 3.284 3.293 3.302 91.59% Castro::construct_ctu_hydro_source() 10 2.498 2.502 2.507 69.55% Gravity::make_radial_gravity() 21 0.3381 0.3472 0.3563 9.88% Gravity::get_new_grav_vector() 11 0.2294 0.2335 0.2368 6.57% AmrLevel::FillPatch() 41 0.1954 0.2144 0.2355 6.53% Castro::construct_new_gravity() 10 0.2054 0.2085 0.2111 5.86% Castro::construct_old_gravity() 10 0.1926 0.1988 0.2064 5.73% Gravity::get_old_grav_vector() 10 0.1919 0.1982 0.2058 5.71% FillPatchIterator::Initialize 41 0.1634 0.1833 0.2018 5.60% Castro::initialize_do_advance() 10 0.1657 0.182 0.1962 5.44% Amr::init() 1 0.1819 0.1821 0.1821 5.05% check_for_negative_density() 10 0.004059 0.1021 0.1767 4.90% Amr::initialInit() 1 0.1648 0.165 0.1651 4.58% FillPatchIterator::FillFromLevel0() 41 0.1151 0.1365 0.1519 4.21% FillPatchSingleLevel 41 0.115 0.1364 0.1518 4.21% Castro::expand_state() 10 0.1106 0.1254 0.1412 3.92% Amr::InitializeInit() 1 0.06051 0.09973 0.1364 3.78% Amr::defBaseLevel() 1 0.06051 0.09973 0.1364 3.78% Castro::clean_state() 62 0.1147 0.1186 0.123 3.41% Castro::initData() 1 0.04265 0.08157 0.1185 3.29% FabArray::ParallelCopy() 41 0.07875 0.09901 0.1118 3.10% Amr::FinalizeInit() 1 0.02869 0.06529 0.1046 2.90% Castro::do_old_sources() 10 0.0918 0.09541 0.09949 2.76% Castro::estTimeStep() 21 0.02332 0.06845 0.09662 2.68% FabArray::setVal() 143 0.06591 0.07696 0.09126 2.53% amrex::Copy() 193 0.0683 0.07919 0.08886 2.46% Castro::initialize_advance() 10 0.07097 0.07964 0.08865 2.46% Castro::computeInitialDt() 2 0.002221 0.03887 0.07812 2.17% Castro::do_new_sources() 10 0.05956 0.06719 0.07776 2.16% Castro::computeTemp() 63 0.06836 0.07116 0.07452 2.07% FabArray::ParallelCopy_finish() 41 0.03616 0.05687 0.07046 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04896 0.05119 0.05391 1.50% Castro::reset_internal_energy(Fab) 1008 0.04868 0.05089 0.05359 1.49% FabArray::ParallelCopy_nowait() 41 0.03669 0.04207 0.04429 1.23% Castro::normalize_species() 62 0.04072 0.04202 0.04388 1.22% StateDataPhysBCFunct::() 41 0.03491 0.03731 0.03988 1.11% StateData::FillBoundary(geom) 41 0.03481 0.03722 0.03979 1.10% Castro::construct_new_source() 50 0.02827 0.03149 0.03579 0.99% Castro::finalize_do_advance() 10 0.01154 0.02277 0.03108 0.86% Castro::construct_new_gravity_source() 10 0.02212 0.0253 0.02939 0.82% Gravity::interpolate_monopole_grav() 21 0.02808 0.02831 0.02874 0.80% Amr::writePlotFile() 2 0.0274 0.02754 0.02778 0.77% Castro::post_init() 1 0.02587 0.02611 0.02622 0.73% VisMF::Write(FabArray) 2 0.01322 0.01415 0.01747 0.48% Castro::post_timestep() 10 0.01563 0.0159 0.01627 0.45% Castro::apply_source_to_state() 20 0.01233 0.01297 0.01337 0.37% FabArray::Saxpy() 20 0.01229 0.01293 0.01332 0.37% FabArray::setDomainBndry() 41 0.008523 0.01179 0.01314 0.36% Castro::Castro() 1 0.01159 0.01188 0.01272 0.35% Castro::check_for_nan() 20 0.01 0.01085 0.01163 0.32% MultiFab::contains_nan() 20 0.009978 0.01082 0.01161 0.32% Castro::construct_old_source() 50 0.006998 0.009781 0.01056 0.29% Castro::construct_old_gravity_source() 10 0.006928 0.009707 0.01048 0.29% Castro::initMFs() 1 0.007109 0.007454 0.009148 0.25% Castro::computeNewDt() 9 0.008493 0.008503 0.008511 0.24% AmrLevel::AmrLevel(dm) 1 0.005902 0.006063 0.006729 0.19% StateData::define() 4 0.005886 0.006045 0.00671 0.19% Castro::enforce_min_density() 62 0.005777 0.006147 0.006592 0.18% Castro::swap_state_time_levels() 10 0.003516 0.004816 0.005367 0.15% Castro::finalize_advance() 10 0.002951 0.003844 0.004799 0.13% Castro::buildMetrics() 1 0.001775 0.001843 0.002069 0.06% Castro::post_regrid() 1 0.001535 0.001566 0.001595 0.04% Amr::InitAmr() 1 0.0002795 0.0003126 0.0004825 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.213e-05 0.0001854 0.0002132 0.01% DistributionMapping::LeastUsedCPUs() 1 7.108e-06 0.0001802 0.000207 0.01% Castro::enforce_consistent_e() 1 7.267e-05 8.262e-05 9.573e-05 0.00% FabArrayBase::getCPC() 41 6.987e-05 8.112e-05 9.482e-05 0.00% Amr::writeSmallPlotFile() 1 2.679e-05 5.251e-05 6.216e-05 0.00% Castro::enforce_speed_limit() 62 2.702e-05 3.211e-05 3.809e-05 0.00% FabArrayBase::CPC::define() 2 2.117e-05 2.483e-05 3.19e-05 0.00% Gravity::swapTimeLevels() 10 1.293e-05 1.491e-05 1.635e-05 0.00% Gravity::set_mass_offset() 10 9.606e-06 1.199e-05 1.59e-05 0.00% Castro::create_source_corrector() 10 8.24e-06 9.357e-06 1.062e-05 0.00% Amr::initSubcycle() 1 8.767e-06 9.192e-06 9.849e-06 0.00% Castro::retry_advance_ctu() 10 7.071e-06 7.696e-06 8.704e-06 0.00% Castro::FluxRegCrseInit 10 6.736e-06 7.586e-06 8.388e-06 0.00% Castro::FluxRegFineAdd() 10 2.01e-06 2.304e-06 2.577e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.002e-06 1.103e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 31 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-32-g587542a395e4) finalized