MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-40-ge0583fbd54cc) initialized Starting run at 05:37:53 UTC on 2023-07-25. Successfully read inputs file ... Castro git describe: 23.07-18-g440d64b97 AMReX git describe: 23.07-40-ge0583fbd5 Microphysics git describe: 23.07-47-geb5189fa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01594067 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.384188683 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.392543766 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331541943 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330761509 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.366705852 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337312922 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312708519 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312540724 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314572266 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312649238 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.048635801 seconds Ending run at 05:37:56 UTC on 2023-07-25. Run time = 3.635147137 Run time without initialization = 3.451736225 Average number of zones advanced per microsecond: 0.759 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.634 ... 3.635 ... 3.635 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3179 2.3737 2.4430 67.20% Gravity::make_radial_gravity() 21 0.3278 0.3329 0.3403 9.36% check_for_negative_density() 10 0.02782 0.09905 0.1577 4.34% Castro::estTimeStep() 21 0.0269 0.07437 0.1247 3.43% Castro::initData() 1 0.03859 0.07759 0.1162 3.20% amrex::Copy() 193 0.07203 0.07909 0.08672 2.39% FabArray::setVal() 143 0.06451 0.07505 0.08604 2.37% FabArray::ParallelCopy_finish() 41 0.03639 0.05006 0.0629 1.73% VisMF::Write(FabArray) 2 0.01322 0.01862 0.05492 1.51% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05035 0.05407 1.49% Amr::writePlotFile() 2 0.006907 0.0432 0.04851 1.33% FabArray::ParallelCopy_nowait() 41 0.04053 0.04248 0.04366 1.20% Castro::normalize_species() 62 0.04101 0.04178 0.04336 1.19% StateData::FillBoundary(geom) 41 0.03416 0.03709 0.03976 1.09% FillPatchIterator::Initialize 41 0.02946 0.03393 0.0365 1.00% Castro::construct_new_gravity_source() 10 0.02222 0.0262 0.03265 0.90% Gravity::interpolate_monopole_grav() 21 0.02773 0.02811 0.02863 0.79% Castro::initialize_do_advance() 10 0.01378 0.0186 0.0222 0.61% Castro::computeTemp() 63 0.01927 0.01982 0.02081 0.57% Castro::initialize_advance() 10 0.009424 0.01274 0.01643 0.45% FabArray::Saxpy() 20 0.01227 0.01341 0.01393 0.38% FabArray::setDomainBndry() 41 0.008932 0.01151 0.01287 0.35% MultiFab::contains_nan() 20 0.009527 0.01083 0.01215 0.33% Castro::construct_old_gravity_source() 10 0.009006 0.01041 0.01076 0.30% Castro::initMFs() 1 0.00711 0.007459 0.009276 0.26% Castro::construct_new_source() 50 0.006172 0.006409 0.006794 0.19% main() 1 0.005395 0.006145 0.006764 0.19% StateData::define() 4 0.005833 0.005969 0.00674 0.19% Castro::enforce_min_density() 62 0.005873 0.00612 0.006431 0.18% Gravity::get_new_grav_vector() 11 0.00294 0.003844 0.006067 0.17% Castro::swap_state_time_levels() 10 0.003518 0.004768 0.004969 0.14% Amr::coarseTimeStep() 10 0.001097 0.003089 0.004625 0.13% Castro::finalize_do_advance() 10 0.001755 0.002092 0.002565 0.07% Gravity::get_old_grav_vector() 10 0.001616 0.001919 0.002189 0.06% Castro::buildMetrics() 1 0.001653 0.001698 0.001942 0.05% AmrLevel::FillPatch() 41 0.001208 0.0015 0.001926 0.05% Amr::InitAmr() 1 0.0002962 0.000321 0.0004283 0.01% Amr::timeStep() 10 0.000186 0.000235 0.0004256 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002853 0.0003019 0.0003233 0.01% Castro::do_advance_ctu() 10 0.0001504 0.0001649 0.0001861 0.01% Castro::clean_state() 62 0.0001256 0.0001461 0.00016 0.00% DistributionMapping::LeastUsedCPUs() 1 8.226e-06 0.0001155 0.0001323 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001004 0.0001074 0.0001252 0.00% Castro::finalize_advance() 10 8.575e-05 0.0001033 0.0001195 0.00% Castro::do_old_sources() 10 7.484e-05 9.141e-05 0.0001046 0.00% StateDataPhysBCFunct::() 41 7.931e-05 8.876e-05 0.0001033 0.00% Amr::FinalizeInit() 1 4.303e-06 1.711e-05 0.0001032 0.00% Castro::Castro() 1 5.879e-05 7.875e-05 0.0001012 0.00% Castro::enforce_consistent_e() 1 7.463e-05 8.56e-05 0.000101 0.00% Castro::construct_old_source() 50 4.711e-05 6.847e-05 7.932e-05 0.00% FabArray::ParallelCopy() 41 5.973e-05 6.851e-05 7.746e-05 0.00% FillPatchSingleLevel 41 5.814e-05 6.38e-05 7.392e-05 0.00% Castro::do_new_sources() 10 5.284e-05 6.126e-05 6.6e-05 0.00% Castro::apply_source_to_state() 20 3.368e-05 4.315e-05 6.425e-05 0.00% Amr::writeSmallPlotFile() 1 2.797e-05 4.714e-05 6.146e-05 0.00% Castro::subcycle_advance_ctu() 10 4.655e-05 5.306e-05 6.127e-05 0.00% Castro::construct_new_gravity() 10 3.361e-05 3.979e-05 5.715e-05 0.00% FabArrayBase::getCPC() 41 4.245e-05 4.78e-05 5.435e-05 0.00% Castro::construct_old_gravity() 10 4.148e-05 4.767e-05 5.268e-05 0.00% Castro::advance() 10 3.993e-05 4.71e-05 5.097e-05 0.00% Amr::defBaseLevel() 1 2.341e-05 3.446e-05 4.174e-05 0.00% Castro::enforce_speed_limit() 62 2.498e-05 2.844e-05 3.112e-05 0.00% FabArrayBase::CPC::define() 2 1.904e-05 2.576e-05 2.946e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.539e-05 2.003e-05 2.646e-05 0.00% Castro::expand_state() 10 1.966e-05 2.244e-05 2.621e-05 0.00% Castro::check_for_nan() 20 2.204e-05 2.27e-05 2.468e-05 0.00% Gravity::swapTimeLevels() 10 1.09e-05 1.491e-05 1.814e-05 0.00% Gravity::set_mass_offset() 10 8.935e-06 1.059e-05 1.503e-05 0.00% Castro::post_timestep() 10 1.289e-05 1.391e-05 1.479e-05 0.00% Castro::computeNewDt() 9 9.215e-06 1.092e-05 1.308e-05 0.00% Castro::post_regrid() 1 1.868e-06 4.364e-06 1.142e-05 0.00% Amr::initSubcycle() 1 8.587e-06 9.026e-06 9.975e-06 0.00% Castro::create_source_corrector() 10 6.841e-06 8.452e-06 9.58e-06 0.00% Castro::retry_advance_ctu() 10 6.684e-06 7.528e-06 8.562e-06 0.00% Castro::FluxRegCrseInit 10 6.121e-06 6.884e-06 7.466e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.512e-06 4.932e-06 6.337e-06 0.00% Castro::computeInitialDt() 2 4.148e-06 4.506e-06 4.85e-06 0.00% Amr::InitializeInit() 1 1.791e-06 2.533e-06 4.819e-06 0.00% Castro::post_init() 1 2.984e-06 3.956e-06 4.567e-06 0.00% Amr::init() 1 1.746e-06 2.441e-06 3.297e-06 0.00% Castro::FluxRegFineAdd() 10 1.989e-06 2.448e-06 2.795e-06 0.00% Amr::initialInit() 1 1.335e-06 1.758e-06 2.625e-06 0.00% DistributionMapping::Distribute() 1 8.62e-07 1.044e-06 1.213e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.634 3.635 3.635 100.00% Amr::coarseTimeStep() 10 3.396 3.396 3.396 93.43% Amr::timeStep() 10 3.382 3.383 3.385 93.12% Castro::advance() 10 3.366 3.367 3.368 92.64% Castro::subcycle_advance_ctu() 10 3.278 3.286 3.292 90.56% Castro::do_advance_ctu() 10 3.277 3.286 3.292 90.56% Castro::construct_ctu_hydro_source() 10 2.49 2.494 2.499 68.74% Gravity::make_radial_gravity() 21 0.3446 0.3496 0.357 9.82% Gravity::get_new_grav_vector() 11 0.2326 0.2351 0.2378 6.54% AmrLevel::FillPatch() 41 0.1897 0.2066 0.2274 6.26% Castro::construct_new_gravity() 10 0.2085 0.2103 0.2123 5.84% Castro::construct_old_gravity() 10 0.1914 0.1984 0.2049 5.64% Gravity::get_old_grav_vector() 10 0.1908 0.1978 0.2041 5.62% FillPatchIterator::Initialize 41 0.1594 0.1755 0.1945 5.35% Castro::initialize_do_advance() 10 0.1634 0.1757 0.1887 5.19% Amr::init() 1 0.1828 0.1829 0.183 5.03% Amr::initialInit() 1 0.1667 0.1668 0.167 4.59% check_for_negative_density() 10 0.02782 0.09905 0.1577 4.34% FillPatchIterator::FillFromLevel0() 41 0.115 0.13 0.1453 4.00% FillPatchSingleLevel 41 0.1149 0.1299 0.1452 3.99% Amr::InitializeInit() 1 0.06047 0.09954 0.1383 3.80% Amr::defBaseLevel() 1 0.06047 0.09954 0.1383 3.80% Castro::expand_state() 10 0.1087 0.1201 0.134 3.69% Castro::estTimeStep() 21 0.0269 0.07437 0.1247 3.43% Castro::clean_state() 62 0.1147 0.1176 0.1242 3.42% Castro::initData() 1 0.04276 0.08154 0.1201 3.30% FabArray::ParallelCopy() 41 0.07907 0.09268 0.1067 2.93% Amr::FinalizeInit() 1 0.02834 0.06728 0.1065 2.93% Castro::do_old_sources() 10 0.09121 0.0949 0.1003 2.76% amrex::Copy() 193 0.07203 0.07909 0.08672 2.39% FabArray::setVal() 143 0.06451 0.07505 0.08604 2.37% Castro::initialize_advance() 10 0.07059 0.07714 0.08594 2.36% Castro::do_new_sources() 10 0.05916 0.06908 0.0826 2.27% Castro::computeInitialDt() 2 0.002018 0.04077 0.07986 2.20% Castro::computeTemp() 63 0.06831 0.07047 0.07521 2.07% Amr::writePlotFile() 2 0.06471 0.06483 0.06502 1.79% FabArray::ParallelCopy_finish() 41 0.03639 0.05006 0.0629 1.73% VisMF::Write(FabArray) 2 0.01322 0.01862 0.05492 1.51% Castro::reset_internal_energy(MultiFab) 63 0.04873 0.05065 0.05439 1.50% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05035 0.05407 1.49% FabArray::ParallelCopy_nowait() 41 0.0406 0.04255 0.04373 1.20% Castro::normalize_species() 62 0.04101 0.04178 0.04336 1.19% StateDataPhysBCFunct::() 41 0.03425 0.03718 0.03985 1.10% StateData::FillBoundary(geom) 41 0.03416 0.03709 0.03976 1.09% Castro::construct_new_source() 50 0.02842 0.03261 0.03944 1.08% Castro::finalize_do_advance() 10 0.01265 0.02663 0.03759 1.03% Castro::construct_new_gravity_source() 10 0.02222 0.0262 0.03265 0.90% Gravity::interpolate_monopole_grav() 21 0.02773 0.02811 0.02863 0.79% Castro::post_init() 1 0.02581 0.02598 0.02618 0.72% Castro::post_timestep() 10 0.01561 0.0163 0.01746 0.48% Castro::apply_source_to_state() 20 0.01231 0.01346 0.01396 0.38% FabArray::Saxpy() 20 0.01227 0.01341 0.01393 0.38% FabArray::setDomainBndry() 41 0.008932 0.01151 0.01287 0.35% Castro::Castro() 1 0.01161 0.01185 0.01268 0.35% Castro::check_for_nan() 20 0.009549 0.01085 0.01218 0.34% MultiFab::contains_nan() 20 0.009527 0.01083 0.01215 0.33% Castro::construct_old_source() 50 0.009054 0.01048 0.01082 0.30% Castro::construct_old_gravity_source() 10 0.009006 0.01041 0.01076 0.30% Castro::initMFs() 1 0.00711 0.007459 0.009276 0.26% Castro::computeNewDt() 9 0.009073 0.009082 0.00909 0.25% AmrLevel::AmrLevel(dm) 1 0.005849 0.005989 0.006766 0.19% StateData::define() 4 0.005833 0.005969 0.00674 0.19% Castro::enforce_min_density() 62 0.005873 0.00612 0.006431 0.18% Castro::swap_state_time_levels() 10 0.003518 0.004768 0.004969 0.14% Castro::finalize_advance() 10 0.002941 0.003484 0.004012 0.11% Castro::buildMetrics() 1 0.001782 0.001832 0.0021 0.06% Castro::post_regrid() 1 0.001517 0.001584 0.001639 0.05% Amr::InitAmr() 1 0.0003049 0.00033 0.0004369 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.263e-05 0.0001215 0.0001398 0.00% DistributionMapping::LeastUsedCPUs() 1 8.226e-06 0.0001155 0.0001323 0.00% Castro::enforce_consistent_e() 1 7.463e-05 8.56e-05 0.000101 0.00% FabArrayBase::getCPC() 41 6.922e-05 7.356e-05 8.017e-05 0.00% Amr::writeSmallPlotFile() 1 2.797e-05 4.714e-05 6.146e-05 0.00% Castro::enforce_speed_limit() 62 2.498e-05 2.844e-05 3.112e-05 0.00% FabArrayBase::CPC::define() 2 1.904e-05 2.576e-05 2.946e-05 0.00% Gravity::swapTimeLevels() 10 1.09e-05 1.491e-05 1.814e-05 0.00% Gravity::set_mass_offset() 10 8.935e-06 1.059e-05 1.503e-05 0.00% Amr::initSubcycle() 1 8.587e-06 9.026e-06 9.975e-06 0.00% Castro::create_source_corrector() 10 6.841e-06 8.452e-06 9.58e-06 0.00% Castro::retry_advance_ctu() 10 6.684e-06 7.528e-06 8.562e-06 0.00% Castro::FluxRegCrseInit 10 6.121e-06 6.884e-06 7.466e-06 0.00% Castro::FluxRegFineAdd() 10 1.989e-06 2.448e-06 2.795e-06 0.00% DistributionMapping::Distribute() 1 8.62e-07 1.044e-06 1.213e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-40-ge0583fbd54cc) finalized