MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-42-g8aa7dc6ef40b) initialized Starting run at 05:20:41 UTC on 2023-07-26. Successfully read inputs file ... Castro git describe: 23.07-20-g4174f17eb AMReX git describe: 23.07-42-g8aa7dc6ef Microphysics git describe: 23.07-47-geb5189fa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018693179 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.395527497 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.363589653 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332405531 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330044888 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362967437 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330560223 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311143757 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311094616 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31199162 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313045438 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01029688 seconds Ending run at 05:20:45 UTC on 2023-07-26. Run time = 3.636257843 Run time without initialization = 3.380001018 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.635 ... 3.636 ... 3.636 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3015 2.3548 2.4325 66.89% Gravity::make_radial_gravity() 21 0.3364 0.3456 0.3607 9.92% Castro::initData() 1 0.03829 0.1019 0.163 4.48% check_for_negative_density() 10 0.0225 0.1051 0.1614 4.44% Castro::estTimeStep() 21 0.02188 0.09609 0.1605 4.41% FabArray::ParallelCopy_finish() 41 0.03391 0.05652 0.09349 2.57% amrex::Copy() 193 0.06444 0.07509 0.08563 2.35% FabArray::setVal() 143 0.05645 0.06694 0.07793 2.14% Castro::reset_internal_energy(Fab) 1008 0.04804 0.05123 0.05493 1.51% Castro::normalize_species() 62 0.041 0.04241 0.04348 1.20% FabArray::ParallelCopy_nowait() 41 0.03544 0.04066 0.04253 1.17% StateData::FillBoundary(geom) 41 0.03509 0.03772 0.04104 1.13% FillPatchIterator::Initialize 41 0.02912 0.03408 0.03745 1.03% Gravity::interpolate_monopole_grav() 21 0.02784 0.02843 0.02927 0.80% Castro::construct_new_gravity_source() 10 0.02211 0.02441 0.02741 0.75% Castro::computeTemp() 63 0.01873 0.02035 0.02206 0.61% Castro::initialize_do_advance() 10 0.01182 0.01801 0.02128 0.59% VisMF::Write(FabArray) 2 0.01339 0.01514 0.01974 0.54% Castro::initialize_advance() 10 0.004087 0.01048 0.01472 0.40% Amr::writePlotFile() 2 0.007424 0.01157 0.01406 0.39% FabArray::Saxpy() 20 0.01082 0.0125 0.01333 0.37% MultiFab::contains_nan() 20 0.009543 0.01061 0.01176 0.32% FabArray::setDomainBndry() 41 0.008655 0.01069 0.01176 0.32% Castro::initMFs() 1 0.00711 0.009087 0.01052 0.29% Castro::construct_old_gravity_source() 10 0.007114 0.009527 0.01021 0.28% StateData::define() 4 0.00589 0.007433 0.008577 0.24% Castro::swap_state_time_levels() 10 0.003352 0.005341 0.006714 0.18% main() 1 0.00549 0.005991 0.006562 0.18% Castro::construct_new_source() 50 0.005759 0.006197 0.006479 0.18% Castro::enforce_min_density() 62 0.005706 0.006174 0.006378 0.18% Gravity::get_new_grav_vector() 11 0.003121 0.003801 0.004409 0.12% Amr::coarseTimeStep() 10 0.00186 0.002213 0.002639 0.07% Castro::buildMetrics() 1 0.001676 0.002121 0.00246 0.07% Gravity::get_old_grav_vector() 10 0.001675 0.001916 0.002195 0.06% Castro::finalize_do_advance() 10 0.0005739 0.001691 0.002113 0.06% AmrLevel::FillPatch() 41 0.0007877 0.001117 0.001478 0.04% Amr::timeStep() 10 0.0001672 0.0002385 0.0005179 0.01% Amr::InitAmr() 1 0.0002993 0.0004216 0.0005139 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002903 0.0003133 0.000326 0.01% DistributionMapping::LeastUsedCPUs() 1 6.929e-06 0.0001154 0.0002504 0.01% Castro::do_advance_ctu() 10 0.0001373 0.0001747 0.0002047 0.01% Castro::enforce_consistent_e() 1 7.783e-05 0.00011 0.0001622 0.00% Castro::clean_state() 62 0.0001329 0.0001487 0.0001565 0.00% FillPatchIterator::FillFromLevel0() 41 9.835e-05 0.0001111 0.0001299 0.00% StateDataPhysBCFunct::() 41 7.751e-05 9.353e-05 0.0001173 0.00% Castro::finalize_advance() 10 7.716e-05 9.438e-05 0.00011 0.00% Castro::do_old_sources() 10 6.756e-05 8.924e-05 0.0001041 0.00% Castro::Castro() 1 5.77e-05 7.434e-05 9.077e-05 0.00% Castro::construct_old_source() 50 5.082e-05 6.843e-05 8.09e-05 0.00% FabArray::ParallelCopy() 41 6.306e-05 7.156e-05 7.986e-05 0.00% FillPatchSingleLevel 41 5.52e-05 6.587e-05 7.595e-05 0.00% Amr::FinalizeInit() 1 4.695e-06 1.415e-05 7.139e-05 0.00% Castro::do_new_sources() 10 5.299e-05 6.389e-05 7.036e-05 0.00% FabArrayBase::getCPC() 41 4.54e-05 5.102e-05 5.925e-05 0.00% Castro::subcycle_advance_ctu() 10 4.292e-05 5.236e-05 5.833e-05 0.00% Castro::advance() 10 4.022e-05 4.567e-05 5.713e-05 0.00% Amr::writeSmallPlotFile() 1 2.891e-05 4.492e-05 5.515e-05 0.00% Castro::construct_old_gravity() 10 4.011e-05 4.794e-05 5.495e-05 0.00% Castro::construct_new_gravity() 10 3.279e-05 3.891e-05 4.854e-05 0.00% Castro::apply_source_to_state() 20 3.552e-05 4.148e-05 4.575e-05 0.00% FabArrayBase::CPC::define() 2 2.465e-05 2.784e-05 3.45e-05 0.00% Amr::defBaseLevel() 1 2.699e-05 3.088e-05 3.346e-05 0.00% Castro::enforce_speed_limit() 62 2.406e-05 2.917e-05 3.258e-05 0.00% Castro::expand_state() 10 2.194e-05 2.538e-05 3.037e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.566e-05 2.223e-05 2.845e-05 0.00% Castro::check_for_nan() 20 2.194e-05 2.303e-05 2.388e-05 0.00% Gravity::swapTimeLevels() 10 1.079e-05 1.414e-05 2.168e-05 0.00% Castro::post_timestep() 10 1.32e-05 1.522e-05 1.682e-05 0.00% Amr::initSubcycle() 1 9.135e-06 1.269e-05 1.6e-05 0.00% Gravity::set_mass_offset() 10 9.272e-06 1.168e-05 1.358e-05 0.00% Castro::computeNewDt() 9 8.39e-06 1.092e-05 1.271e-05 0.00% Castro::create_source_corrector() 10 6.075e-06 8.524e-06 1.034e-05 0.00% Castro::retry_advance_ctu() 10 6.714e-06 7.546e-06 8.447e-06 0.00% Castro::FluxRegCrseInit 10 5.581e-06 7.28e-06 8.139e-06 0.00% Castro::post_regrid() 1 2.822e-06 4.143e-06 7.686e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.172e-06 4.785e-06 6.882e-06 0.00% Castro::computeInitialDt() 2 4.545e-06 5.073e-06 6.469e-06 0.00% Castro::post_init() 1 4.186e-06 4.726e-06 5.537e-06 0.00% Amr::InitializeInit() 1 2.099e-06 2.786e-06 5.294e-06 0.00% Amr::init() 1 1.98e-06 2.49e-06 2.983e-06 0.00% Castro::FluxRegFineAdd() 10 1.985e-06 2.364e-06 2.949e-06 0.00% Amr::initialInit() 1 1.448e-06 1.942e-06 2.584e-06 0.00% DistributionMapping::Distribute() 1 1.04e-06 1.192e-06 1.357e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.635 3.636 3.636 100.00% Amr::coarseTimeStep() 10 3.363 3.363 3.363 92.49% Amr::timeStep() 10 3.35 3.351 3.351 92.16% Castro::advance() 10 3.334 3.335 3.335 91.72% Castro::subcycle_advance_ctu() 10 3.249 3.26 3.274 90.03% Castro::do_advance_ctu() 10 3.249 3.259 3.274 90.03% Castro::construct_ctu_hydro_source() 10 2.477 2.481 2.485 68.33% Gravity::make_radial_gravity() 21 0.3522 0.3612 0.374 10.29% Amr::init() 1 0.2556 0.2557 0.2558 7.04% Gravity::get_new_grav_vector() 11 0.2334 0.2359 0.2383 6.55% Amr::initialInit() 1 0.2366 0.237 0.2374 6.53% AmrLevel::FillPatch() 41 0.1943 0.2098 0.2264 6.23% Castro::construct_old_gravity() 10 0.2008 0.2094 0.2199 6.05% Gravity::get_old_grav_vector() 10 0.2002 0.2088 0.2193 6.03% FillPatchIterator::Initialize 41 0.1634 0.1801 0.2022 5.56% Castro::construct_new_gravity() 10 0.1954 0.1967 0.1982 5.45% Amr::InitializeInit() 1 0.05827 0.1271 0.1928 5.30% Amr::defBaseLevel() 1 0.05827 0.1271 0.1928 5.30% Castro::initialize_do_advance() 10 0.1698 0.1792 0.1867 5.13% Amr::FinalizeInit() 1 0.04432 0.1099 0.1783 4.90% Castro::initData() 1 0.04182 0.1064 0.1688 4.64% FillPatchIterator::FillFromLevel0() 41 0.1174 0.1353 0.1644 4.52% FillPatchSingleLevel 41 0.1173 0.1352 0.1643 4.52% check_for_negative_density() 10 0.0225 0.1051 0.1614 4.44% Castro::estTimeStep() 21 0.02188 0.09609 0.1605 4.41% Castro::computeInitialDt() 2 0.003193 0.06897 0.1379 3.79% Castro::expand_state() 10 0.1124 0.1233 0.136 3.74% FabArray::ParallelCopy() 41 0.07608 0.09733 0.1291 3.55% Castro::clean_state() 62 0.1143 0.1194 0.1245 3.42% Castro::do_old_sources() 10 0.08899 0.09212 0.09483 2.61% FabArray::ParallelCopy_finish() 41 0.03391 0.05652 0.09349 2.57% amrex::Copy() 193 0.06444 0.07509 0.08563 2.35% Castro::initialize_advance() 10 0.05612 0.07165 0.08205 2.26% FabArray::setVal() 143 0.05645 0.06694 0.07793 2.14% Castro::computeTemp() 63 0.06709 0.07188 0.07653 2.10% Castro::do_new_sources() 10 0.05871 0.06446 0.07278 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04836 0.05154 0.05526 1.52% Castro::reset_internal_energy(Fab) 1008 0.04804 0.05123 0.05493 1.51% Castro::normalize_species() 62 0.041 0.04241 0.04348 1.20% FabArray::ParallelCopy_nowait() 41 0.03552 0.04074 0.0426 1.17% StateDataPhysBCFunct::() 41 0.03517 0.03781 0.04113 1.13% StateData::FillBoundary(geom) 41 0.03509 0.03772 0.04104 1.13% Castro::post_init() 1 0.03996 0.04028 0.04081 1.12% Castro::construct_new_source() 50 0.02831 0.03061 0.03389 0.93% Amr::writePlotFile() 2 0.02856 0.02909 0.02963 0.81% Gravity::interpolate_monopole_grav() 21 0.02784 0.02843 0.02927 0.80% Castro::construct_new_gravity_source() 10 0.02211 0.02441 0.02741 0.75% Castro::finalize_do_advance() 10 0.01183 0.0204 0.02736 0.75% VisMF::Write(FabArray) 2 0.01339 0.01514 0.01974 0.54% Castro::post_timestep() 10 0.01536 0.016 0.01644 0.45% Castro::Castro() 1 0.01025 0.01309 0.01532 0.42% Castro::apply_source_to_state() 20 0.01085 0.01254 0.01337 0.37% FabArray::Saxpy() 20 0.01082 0.0125 0.01333 0.37% Castro::check_for_nan() 20 0.009567 0.01064 0.01178 0.32% MultiFab::contains_nan() 20 0.009543 0.01061 0.01176 0.32% FabArray::setDomainBndry() 41 0.008655 0.01069 0.01176 0.32% Castro::initMFs() 1 0.00711 0.009087 0.01052 0.29% Castro::construct_old_source() 50 0.007175 0.009595 0.01029 0.28% Castro::construct_old_gravity_source() 10 0.007114 0.009527 0.01021 0.28% AmrLevel::AmrLevel(dm) 1 0.005909 0.007455 0.008602 0.24% StateData::define() 4 0.00589 0.007433 0.008577 0.24% Castro::computeNewDt() 9 0.008425 0.008432 0.00844 0.23% Castro::swap_state_time_levels() 10 0.003352 0.005341 0.006714 0.18% Castro::enforce_min_density() 62 0.005706 0.006174 0.006378 0.18% Castro::finalize_advance() 10 0.002899 0.003433 0.004031 0.11% Castro::post_regrid() 1 0.001549 0.002273 0.002862 0.08% Castro::buildMetrics() 1 0.001786 0.002291 0.002682 0.07% Amr::InitAmr() 1 0.0003087 0.0004343 0.0005299 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.251e-05 0.0001214 0.0002584 0.01% DistributionMapping::LeastUsedCPUs() 1 6.929e-06 0.0001154 0.0002504 0.01% Castro::enforce_consistent_e() 1 7.783e-05 0.00011 0.0001622 0.00% FabArrayBase::getCPC() 41 7.005e-05 7.886e-05 9.376e-05 0.00% Amr::writeSmallPlotFile() 1 2.891e-05 4.492e-05 5.515e-05 0.00% FabArrayBase::CPC::define() 2 2.465e-05 2.784e-05 3.45e-05 0.00% Castro::enforce_speed_limit() 62 2.406e-05 2.917e-05 3.258e-05 0.00% Gravity::swapTimeLevels() 10 1.079e-05 1.414e-05 2.168e-05 0.00% Amr::initSubcycle() 1 9.135e-06 1.269e-05 1.6e-05 0.00% Gravity::set_mass_offset() 10 9.272e-06 1.168e-05 1.358e-05 0.00% Castro::create_source_corrector() 10 6.075e-06 8.524e-06 1.034e-05 0.00% Castro::retry_advance_ctu() 10 6.714e-06 7.546e-06 8.447e-06 0.00% Castro::FluxRegCrseInit 10 5.581e-06 7.28e-06 8.139e-06 0.00% Castro::FluxRegFineAdd() 10 1.985e-06 2.364e-06 2.949e-06 0.00% DistributionMapping::Distribute() 1 1.04e-06 1.192e-06 1.357e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-42-g8aa7dc6ef40b) finalized