MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-51-gbba6d9c2bc68) initialized Starting run at 05:37:05 UTC on 2023-07-28. Successfully read inputs file ... Castro git describe: 23.07-20-g4174f17eb AMReX git describe: 23.07-51-gbba6d9c2b Microphysics git describe: 23.07-48-g588beb9c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018723668 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368321081 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.369082441 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341457133 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.342435673 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.373789339 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335242523 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314283789 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312497396 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312821343 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313279908 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010914883 seconds Ending run at 05:37:09 UTC on 2023-07-28. Run time = 3.651298069 Run time without initialization = 3.401666439 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.65 ... 3.651 ... 3.651 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2825 2.3748 2.4803 67.93% Gravity::make_radial_gravity() 21 0.3264 0.3341 0.3472 9.51% check_for_negative_density() 10 0.0073 0.1181 0.2117 5.80% Castro::estTimeStep() 21 0.0231 0.1071 0.1608 4.40% Castro::initData() 1 0.03859 0.08737 0.158 4.33% FabArray::ParallelCopy_finish() 41 0.03912 0.05608 0.09309 2.55% amrex::Copy() 193 0.06331 0.07503 0.08402 2.30% FabArray::setVal() 143 0.05818 0.06753 0.07748 2.12% Castro::reset_internal_energy(Fab) 1008 0.04882 0.05018 0.05322 1.46% Castro::normalize_species() 62 0.04083 0.04209 0.04345 1.19% FabArray::ParallelCopy_nowait() 41 0.03679 0.04121 0.04263 1.17% StateData::FillBoundary(geom) 41 0.03413 0.03716 0.04039 1.11% FillPatchIterator::Initialize 41 0.03003 0.03327 0.03582 0.98% Gravity::interpolate_monopole_grav() 21 0.02774 0.02821 0.02902 0.79% Castro::construct_new_gravity_source() 10 0.02201 0.0245 0.02741 0.75% Castro::computeTemp() 63 0.0187 0.01979 0.02075 0.57% VisMF::Write(FabArray) 2 0.014 0.01528 0.02009 0.55% Castro::initialize_do_advance() 10 0.01273 0.01726 0.01942 0.53% Castro::initialize_advance() 10 0.004137 0.01051 0.01475 0.40% Amr::writePlotFile() 2 0.007883 0.01251 0.01462 0.40% FabArray::Saxpy() 20 0.01084 0.01266 0.01342 0.37% MultiFab::contains_nan() 20 0.01076 0.01167 0.01265 0.35% FabArray::setDomainBndry() 41 0.008733 0.0111 0.01237 0.34% Castro::initMFs() 1 0.006957 0.008089 0.01061 0.29% Castro::construct_old_gravity_source() 10 0.007059 0.009596 0.01019 0.28% StateData::define() 4 0.005744 0.006554 0.008483 0.23% Castro::enforce_min_density() 62 0.005807 0.006134 0.006769 0.19% main() 1 0.00522 0.006216 0.006751 0.18% Castro::swap_state_time_levels() 10 0.002704 0.004865 0.006611 0.18% Castro::construct_new_source() 50 0.005725 0.006246 0.006508 0.18% Gravity::get_new_grav_vector() 11 0.00312 0.003705 0.004386 0.12% Amr::coarseTimeStep() 10 0.00174 0.002473 0.003296 0.09% Castro::buildMetrics() 1 0.001638 0.001884 0.002439 0.07% Gravity::get_old_grav_vector() 10 0.00151 0.001916 0.002257 0.06% Castro::finalize_do_advance() 10 0.0006861 0.001595 0.001974 0.05% AmrLevel::FillPatch() 41 0.0008804 0.001181 0.001448 0.04% Amr::InitAmr() 1 0.000265 0.0003423 0.000497 0.01% Amr::timeStep() 10 0.000184 0.0002371 0.0004482 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002705 0.0003002 0.0003307 0.01% DistributionMapping::LeastUsedCPUs() 1 5.653e-06 0.0001787 0.0002612 0.01% Castro::do_advance_ctu() 10 0.0001431 0.0001774 0.0002116 0.01% Castro::clean_state() 62 0.0001489 0.0001655 0.0001834 0.01% Castro::enforce_consistent_e() 1 7.892e-05 9.57e-05 0.0001404 0.00% Castro::finalize_advance() 10 8.998e-05 0.0001051 0.0001321 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001053 0.0001171 0.0001317 0.00% Castro::do_old_sources() 10 8.235e-05 9.947e-05 0.0001143 0.00% StateDataPhysBCFunct::() 41 8.284e-05 9.131e-05 9.867e-05 0.00% FabArray::ParallelCopy() 41 7.145e-05 7.909e-05 9.188e-05 0.00% Castro::construct_old_source() 50 6.058e-05 7.268e-05 9.156e-05 0.00% FillPatchSingleLevel 41 7.063e-05 7.792e-05 8.86e-05 0.00% Castro::Castro() 1 5.437e-05 7.13e-05 8.269e-05 0.00% Castro::do_new_sources() 10 5.578e-05 6.815e-05 8.031e-05 0.00% Amr::FinalizeInit() 1 4.361e-06 1.43e-05 7.863e-05 0.00% FabArrayBase::getCPC() 41 5.084e-05 6.033e-05 6.888e-05 0.00% Amr::writeSmallPlotFile() 1 2.927e-05 5.607e-05 6.717e-05 0.00% Castro::subcycle_advance_ctu() 10 4.873e-05 5.384e-05 5.941e-05 0.00% Castro::construct_old_gravity() 10 3.937e-05 4.784e-05 5.697e-05 0.00% Castro::advance() 10 4.343e-05 4.686e-05 5.389e-05 0.00% Castro::construct_new_gravity() 10 3.513e-05 4.01e-05 5.29e-05 0.00% Castro::apply_source_to_state() 20 4.102e-05 4.529e-05 5.059e-05 0.00% Amr::defBaseLevel() 1 2.423e-05 3.539e-05 4.499e-05 0.00% Castro::enforce_speed_limit() 62 2.693e-05 3.118e-05 3.49e-05 0.00% FabArrayBase::CPC::define() 2 2.093e-05 2.692e-05 3.37e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.478e-05 2.093e-05 2.947e-05 0.00% Castro::expand_state() 10 1.987e-05 2.408e-05 2.799e-05 0.00% Castro::check_for_nan() 20 1.994e-05 2.138e-05 2.225e-05 0.00% Gravity::swapTimeLevels() 10 1.114e-05 1.47e-05 1.883e-05 0.00% Castro::post_timestep() 10 1.239e-05 1.435e-05 1.569e-05 0.00% Amr::initSubcycle() 1 8.664e-06 1.055e-05 1.542e-05 0.00% Gravity::set_mass_offset() 10 9.103e-06 1.123e-05 1.46e-05 0.00% Castro::computeNewDt() 9 1e-05 1.232e-05 1.333e-05 0.00% Castro::create_source_corrector() 10 7.395e-06 8.635e-06 9.382e-06 0.00% Castro::FluxRegCrseInit 10 6.021e-06 7.408e-06 8.858e-06 0.00% Amr::initialInit() 1 1.468e-06 3.249e-06 8.212e-06 0.00% Castro::retry_advance_ctu() 10 6.667e-06 7.028e-06 7.703e-06 0.00% Castro::computeInitialDt() 2 4.174e-06 5.333e-06 6.455e-06 0.00% Castro::post_regrid() 1 1.843e-06 3.335e-06 6.264e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.623e-06 4.742e-06 5.642e-06 0.00% Castro::post_init() 1 3.009e-06 4.308e-06 5.608e-06 0.00% Amr::InitializeInit() 1 1.819e-06 2.506e-06 4.84e-06 0.00% Amr::init() 1 1.713e-06 2.311e-06 2.93e-06 0.00% Castro::FluxRegFineAdd() 10 1.897e-06 2.274e-06 2.686e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.193e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.65 3.651 3.651 100.00% Amr::coarseTimeStep() 10 3.384 3.384 3.384 92.68% Amr::timeStep() 10 3.371 3.371 3.372 92.35% Castro::advance() 10 3.355 3.355 3.356 91.91% Castro::subcycle_advance_ctu() 10 3.271 3.281 3.294 90.22% Castro::do_advance_ctu() 10 3.27 3.28 3.294 90.21% Castro::construct_ctu_hydro_source() 10 2.511 2.515 2.518 68.97% Gravity::make_radial_gravity() 21 0.3423 0.3499 0.3605 9.87% Amr::init() 1 0.249 0.2491 0.2492 6.83% Gravity::get_new_grav_vector() 11 0.2316 0.2339 0.2359 6.46% Amr::initialInit() 1 0.2292 0.23 0.2307 6.32% AmrLevel::FillPatch() 41 0.1848 0.2086 0.2264 6.20% check_for_negative_density() 10 0.0073 0.1181 0.2117 5.80% Castro::construct_old_gravity() 10 0.1954 0.1998 0.209 5.72% Gravity::get_old_grav_vector() 10 0.1948 0.1992 0.2084 5.71% FillPatchIterator::Initialize 41 0.1575 0.1793 0.2033 5.57% Castro::construct_new_gravity() 10 0.1937 0.1952 0.1965 5.38% Amr::InitializeInit() 1 0.05959 0.1103 0.1866 5.11% Amr::defBaseLevel() 1 0.05959 0.1103 0.1866 5.11% Castro::initialize_do_advance() 10 0.1648 0.1761 0.1836 5.03% Amr::FinalizeInit() 1 0.04409 0.1196 0.1705 4.67% FillPatchIterator::FillFromLevel0() 41 0.1169 0.1349 0.1645 4.51% FillPatchSingleLevel 41 0.1168 0.1348 0.1644 4.50% Castro::initData() 1 0.04233 0.09149 0.1631 4.47% Castro::estTimeStep() 21 0.0231 0.1071 0.1608 4.40% Castro::expand_state() 10 0.1068 0.1214 0.1317 3.61% Castro::computeInitialDt() 2 0.003148 0.07953 0.1304 3.57% FabArray::ParallelCopy() 41 0.07989 0.09746 0.1301 3.56% Castro::clean_state() 62 0.114 0.1176 0.1229 3.37% Castro::do_old_sources() 10 0.08788 0.09312 0.0973 2.66% FabArray::ParallelCopy_finish() 41 0.03912 0.05608 0.09309 2.55% amrex::Copy() 193 0.06331 0.07503 0.08402 2.30% Castro::initialize_advance() 10 0.05668 0.0712 0.08118 2.22% FabArray::setVal() 143 0.05818 0.06753 0.07748 2.12% Castro::computeTemp() 63 0.06781 0.07027 0.0743 2.03% Castro::do_new_sources() 10 0.05944 0.06495 0.07339 2.01% Castro::reset_internal_energy(MultiFab) 63 0.0491 0.05048 0.05355 1.47% Castro::reset_internal_energy(Fab) 1008 0.04882 0.05018 0.05322 1.46% Castro::normalize_species() 62 0.04083 0.04209 0.04345 1.19% FabArray::ParallelCopy_nowait() 41 0.03688 0.04129 0.04272 1.17% Castro::post_init() 1 0.03928 0.03978 0.04048 1.11% StateDataPhysBCFunct::() 41 0.03422 0.03725 0.04047 1.11% StateData::FillBoundary(geom) 41 0.03413 0.03716 0.04039 1.11% Castro::construct_new_source() 50 0.02818 0.03074 0.03392 0.93% Amr::writePlotFile() 2 0.02931 0.03014 0.03104 0.85% Gravity::interpolate_monopole_grav() 21 0.02774 0.02821 0.02902 0.79% Castro::construct_new_gravity_source() 10 0.02201 0.0245 0.02741 0.75% Castro::finalize_do_advance() 10 0.01158 0.02057 0.02694 0.74% VisMF::Write(FabArray) 2 0.014 0.01528 0.02009 0.55% Castro::post_timestep() 10 0.01561 0.01587 0.01621 0.44% Castro::Castro() 1 0.01084 0.01205 0.01491 0.41% Castro::apply_source_to_state() 20 0.01088 0.01271 0.01346 0.37% FabArray::Saxpy() 20 0.01084 0.01266 0.01342 0.37% Castro::check_for_nan() 20 0.01078 0.0117 0.01268 0.35% MultiFab::contains_nan() 20 0.01076 0.01167 0.01265 0.35% FabArray::setDomainBndry() 41 0.008733 0.0111 0.01237 0.34% Castro::initMFs() 1 0.006957 0.008089 0.01061 0.29% Castro::construct_old_source() 50 0.007122 0.009669 0.01027 0.28% Castro::construct_old_gravity_source() 10 0.007059 0.009596 0.01019 0.28% Castro::computeNewDt() 9 0.008607 0.008617 0.008622 0.24% AmrLevel::AmrLevel(dm) 1 0.005759 0.006575 0.008507 0.23% StateData::define() 4 0.005744 0.006554 0.008483 0.23% Castro::enforce_min_density() 62 0.005807 0.006134 0.006769 0.19% Castro::swap_state_time_levels() 10 0.002704 0.004865 0.006611 0.18% Castro::finalize_advance() 10 0.002941 0.003504 0.004216 0.12% Castro::post_regrid() 1 0.001496 0.001941 0.002874 0.08% Castro::buildMetrics() 1 0.001756 0.002031 0.002661 0.07% Amr::InitAmr() 1 0.000274 0.0003528 0.0005109 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.094e-05 0.0001847 0.0002679 0.01% DistributionMapping::LeastUsedCPUs() 1 5.653e-06 0.0001787 0.0002612 0.01% Castro::enforce_consistent_e() 1 7.892e-05 9.57e-05 0.0001404 0.00% FabArrayBase::getCPC() 41 8.204e-05 8.726e-05 9.819e-05 0.00% Amr::writeSmallPlotFile() 1 2.927e-05 5.607e-05 6.717e-05 0.00% Castro::enforce_speed_limit() 62 2.693e-05 3.118e-05 3.49e-05 0.00% FabArrayBase::CPC::define() 2 2.093e-05 2.692e-05 3.37e-05 0.00% Gravity::swapTimeLevels() 10 1.114e-05 1.47e-05 1.883e-05 0.00% Amr::initSubcycle() 1 8.664e-06 1.055e-05 1.542e-05 0.00% Gravity::set_mass_offset() 10 9.103e-06 1.123e-05 1.46e-05 0.00% Castro::create_source_corrector() 10 7.395e-06 8.635e-06 9.382e-06 0.00% Castro::FluxRegCrseInit 10 6.021e-06 7.408e-06 8.858e-06 0.00% Castro::retry_advance_ctu() 10 6.667e-06 7.028e-06 7.703e-06 0.00% Castro::FluxRegFineAdd() 10 1.897e-06 2.274e-06 2.686e-06 0.00% DistributionMapping::Distribute() 1 8.41e-07 1.193e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-51-gbba6d9c2bc68) finalized