MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-52-g98d22d21af45) initialized Starting run at 05:21:09 UTC on 2023-07-31. Successfully read inputs file ... Castro git describe: 23.07-20-g4174f17eb AMReX git describe: 23.07-52-g98d22d21a Microphysics git describe: 23.07-48-g588beb9c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016398256 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367053643 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342603144 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.356279363 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338364054 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368009108 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347926793 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313837548 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313911174 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315612999 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315148071 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.036250413 seconds Ending run at 05:21:12 UTC on 2023-07-31. Run time = 3.606330992 Run time without initialization = 3.422239609 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.605 ... 3.606 ... 3.606 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2942 2.3678 2.4194 67.09% Gravity::make_radial_gravity() 21 0.3172 0.3297 0.3425 9.50% check_for_negative_density() 10 0.02854 0.07988 0.1557 4.32% Castro::initData() 1 0.03859 0.07637 0.1163 3.22% Castro::estTimeStep() 21 0.02767 0.07446 0.1131 3.14% FabArray::setVal() 143 0.06713 0.07715 0.09127 2.53% amrex::Copy() 193 0.06938 0.07975 0.09062 2.51% FabArray::ParallelCopy_finish() 41 0.03358 0.05973 0.07396 2.05% Castro::reset_internal_energy(Fab) 1008 0.04804 0.04986 0.05142 1.43% Castro::normalize_species() 62 0.04053 0.04279 0.04427 1.23% FabArray::ParallelCopy_nowait() 41 0.03638 0.04177 0.04388 1.22% StateData::FillBoundary(geom) 41 0.03371 0.03741 0.04026 1.12% FillPatchIterator::Initialize 41 0.02928 0.035 0.03899 1.08% Amr::writePlotFile() 2 0.03285 0.03601 0.03694 1.02% Gravity::interpolate_monopole_grav() 21 0.02799 0.02857 0.03072 0.85% Castro::construct_new_gravity_source() 10 0.02228 0.02567 0.03064 0.85% Castro::initialize_do_advance() 10 0.01249 0.01872 0.02273 0.63% Castro::computeTemp() 63 0.01841 0.01966 0.0204 0.57% VisMF::Write(FabArray) 2 0.01336 0.0141 0.01707 0.47% MultiFab::contains_nan() 20 0.01122 0.0124 0.01634 0.45% Castro::initialize_advance() 10 0.009987 0.01257 0.01547 0.43% FabArray::Saxpy() 20 0.01286 0.01357 0.01451 0.40% FabArray::setDomainBndry() 41 0.009032 0.01175 0.01296 0.36% Castro::construct_old_gravity_source() 10 0.006933 0.009968 0.01083 0.30% Castro::initMFs() 1 0.00696 0.007048 0.007384 0.20% StateData::define() 4 0.005787 0.005973 0.006614 0.18% main() 1 0.005173 0.006127 0.00652 0.18% Castro::construct_new_source() 50 0.005812 0.006305 0.006469 0.18% Castro::enforce_min_density() 62 0.005867 0.006043 0.006273 0.17% Gravity::get_new_grav_vector() 11 0.002798 0.003815 0.00569 0.16% Castro::swap_state_time_levels() 10 0.00346 0.004708 0.005166 0.14% Amr::coarseTimeStep() 10 0.001053 0.002445 0.003413 0.09% Gravity::get_old_grav_vector() 10 0.001536 0.002015 0.002366 0.07% Castro::buildMetrics() 1 0.001629 0.001647 0.00166 0.05% Castro::finalize_do_advance() 10 0.0006533 0.001405 0.001614 0.04% AmrLevel::FillPatch() 41 0.000928 0.001022 0.001138 0.03% Amr::timeStep() 10 0.0001764 0.0002376 0.0004675 0.01% Amr::InitAmr() 1 0.0002788 0.0003121 0.0004553 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002749 0.0002998 0.0003649 0.01% Castro::do_advance_ctu() 10 0.0001462 0.0001617 0.0001888 0.01% DistributionMapping::LeastUsedCPUs() 1 7.775e-06 0.0001453 0.000176 0.00% Castro::clean_state() 62 0.0001393 0.0001532 0.0001697 0.00% Castro::do_old_sources() 10 7.452e-05 9.305e-05 0.0001165 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001 0.0001075 0.0001152 0.00% Castro::finalize_advance() 10 7.862e-05 9.527e-05 0.0001148 0.00% Castro::Castro() 1 5.808e-05 8.309e-05 9.981e-05 0.00% Castro::enforce_consistent_e() 1 7.701e-05 8.461e-05 9.153e-05 0.00% StateDataPhysBCFunct::() 41 7.763e-05 8.594e-05 9.149e-05 0.00% Castro::advance() 10 3.851e-05 5.061e-05 8.938e-05 0.00% Castro::construct_old_source() 50 5.063e-05 7.013e-05 8.377e-05 0.00% FillPatchSingleLevel 41 6.873e-05 7.659e-05 7.942e-05 0.00% FabArray::ParallelCopy() 41 6.84e-05 7.476e-05 7.857e-05 0.00% Castro::do_new_sources() 10 5.354e-05 6.183e-05 7.298e-05 0.00% Amr::FinalizeInit() 1 4.513e-06 1.32e-05 6.991e-05 0.00% FabArrayBase::getCPC() 41 4.332e-05 5.401e-05 6.802e-05 0.00% Amr::writeSmallPlotFile() 1 2.835e-05 4.8e-05 6.376e-05 0.00% Castro::construct_old_gravity() 10 4.275e-05 4.933e-05 6.083e-05 0.00% Castro::subcycle_advance_ctu() 10 3.941e-05 4.851e-05 5.944e-05 0.00% Amr::defBaseLevel() 1 2.672e-05 3.697e-05 5.644e-05 0.00% Castro::construct_new_gravity() 10 3.58e-05 4.22e-05 5.473e-05 0.00% Castro::apply_source_to_state() 20 3.673e-05 4.323e-05 4.974e-05 0.00% Castro::enforce_speed_limit() 62 2.532e-05 3.207e-05 3.709e-05 0.00% FabArrayBase::CPC::define() 2 2.143e-05 2.616e-05 3.487e-05 0.00% Castro::check_for_nan() 20 1.974e-05 2.324e-05 3.298e-05 0.00% Castro::expand_state() 10 1.972e-05 2.442e-05 3.065e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.45e-05 1.883e-05 2.516e-05 0.00% Amr::initSubcycle() 1 8.573e-06 1.047e-05 2.017e-05 0.00% Castro::post_timestep() 10 1.315e-05 1.474e-05 1.83e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.36e-05 1.5e-05 0.00% Castro::FluxRegCrseInit 10 5.733e-06 8.914e-06 1.448e-05 0.00% Castro::computeNewDt() 9 9.591e-06 1.179e-05 1.311e-05 0.00% Gravity::set_mass_offset() 10 8.652e-06 1.055e-05 1.215e-05 0.00% Castro::create_source_corrector() 10 7.865e-06 8.754e-06 1.026e-05 0.00% Amr::initialInit() 1 1.291e-06 3.528e-06 9.223e-06 0.00% Castro::retry_advance_ctu() 10 6.334e-06 7.145e-06 7.705e-06 0.00% Castro::computeInitialDt() 2 4.372e-06 5.121e-06 7.391e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.837e-06 4.873e-06 7.062e-06 0.00% Castro::post_init() 1 3.477e-06 4.239e-06 4.923e-06 0.00% Amr::InitializeInit() 1 1.99e-06 2.701e-06 4.913e-06 0.00% Castro::post_regrid() 1 1.576e-06 2.682e-06 4.191e-06 0.00% Amr::init() 1 2.151e-06 2.511e-06 3.33e-06 0.00% Castro::FluxRegFineAdd() 10 1.917e-06 2.252e-06 2.558e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.037e-06 1.225e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.605 3.606 3.606 100.00% Amr::coarseTimeStep() 10 3.38 3.38 3.38 93.71% Amr::timeStep() 10 3.366 3.367 3.369 93.41% Castro::advance() 10 3.35 3.351 3.352 92.94% Castro::subcycle_advance_ctu() 10 3.257 3.267 3.275 90.81% Castro::do_advance_ctu() 10 3.257 3.267 3.275 90.81% Castro::construct_ctu_hydro_source() 10 2.467 2.47 2.474 68.60% Gravity::make_radial_gravity() 21 0.3356 0.3468 0.3579 9.92% Gravity::get_new_grav_vector() 11 0.2326 0.237 0.2389 6.62% AmrLevel::FillPatch() 41 0.1936 0.217 0.2366 6.56% Castro::construct_new_gravity() 10 0.2088 0.2122 0.2137 5.93% Castro::construct_old_gravity() 10 0.1927 0.1981 0.2062 5.72% Gravity::get_old_grav_vector() 10 0.1921 0.1974 0.2055 5.70% FillPatchIterator::Initialize 41 0.1628 0.1861 0.2027 5.62% Castro::initialize_do_advance() 10 0.1657 0.1808 0.1938 5.37% Amr::init() 1 0.1835 0.1836 0.1837 5.09% Amr::initialInit() 1 0.1667 0.1669 0.1671 4.63% check_for_negative_density() 10 0.02854 0.07988 0.1557 4.32% FillPatchIterator::FillFromLevel0() 41 0.1116 0.1393 0.1531 4.25% FillPatchSingleLevel 41 0.1114 0.1392 0.153 4.24% Castro::expand_state() 10 0.109 0.1246 0.1391 3.86% Amr::InitializeInit() 1 0.06055 0.09841 0.1385 3.84% Amr::defBaseLevel() 1 0.06054 0.09841 0.1385 3.84% Castro::clean_state() 62 0.1151 0.1179 0.1211 3.36% Castro::initData() 1 0.04286 0.0805 0.1203 3.34% FabArray::ParallelCopy() 41 0.07593 0.1017 0.1153 3.20% Castro::estTimeStep() 21 0.02767 0.07446 0.1131 3.14% Amr::FinalizeInit() 1 0.02851 0.06847 0.1063 2.95% Castro::do_old_sources() 10 0.09166 0.09601 0.09987 2.77% FabArray::setVal() 143 0.06713 0.07715 0.09127 2.53% amrex::Copy() 193 0.06938 0.07975 0.09062 2.51% Castro::initialize_advance() 10 0.07215 0.07975 0.08965 2.49% Castro::do_new_sources() 10 0.05973 0.06845 0.08113 2.25% Castro::computeInitialDt() 2 0.002225 0.04229 0.08013 2.22% FabArray::ParallelCopy_finish() 41 0.03358 0.05973 0.07396 2.05% Castro::computeTemp() 63 0.06673 0.06981 0.07198 2.00% Amr::writePlotFile() 2 0.05293 0.05312 0.05335 1.48% Castro::reset_internal_energy(MultiFab) 63 0.04832 0.05016 0.05172 1.43% Castro::reset_internal_energy(Fab) 1008 0.04804 0.04986 0.05142 1.43% Castro::normalize_species() 62 0.04053 0.04279 0.04427 1.23% FabArray::ParallelCopy_nowait() 41 0.03648 0.04185 0.04396 1.22% StateDataPhysBCFunct::() 41 0.0338 0.03749 0.04035 1.12% StateData::FillBoundary(geom) 41 0.03371 0.03741 0.04026 1.12% Castro::construct_new_source() 50 0.02864 0.03198 0.03706 1.03% Castro::finalize_do_advance() 10 0.01209 0.02499 0.03396 0.94% Gravity::interpolate_monopole_grav() 21 0.02799 0.02857 0.03072 0.85% Castro::construct_new_gravity_source() 10 0.02228 0.02567 0.03064 0.85% Castro::post_init() 1 0.0257 0.02582 0.026 0.72% VisMF::Write(FabArray) 2 0.01336 0.0141 0.01707 0.47% Castro::post_timestep() 10 0.01575 0.016 0.01648 0.46% Castro::check_for_nan() 20 0.01124 0.01242 0.01637 0.45% MultiFab::contains_nan() 20 0.01122 0.0124 0.01634 0.45% Castro::apply_source_to_state() 20 0.0129 0.01361 0.01456 0.40% FabArray::Saxpy() 20 0.01286 0.01357 0.01451 0.40% FabArray::setDomainBndry() 41 0.009032 0.01175 0.01296 0.36% Castro::Castro() 1 0.01164 0.01173 0.01204 0.33% Castro::construct_old_source() 50 0.006983 0.01004 0.0109 0.30% Castro::construct_old_gravity_source() 10 0.006933 0.009968 0.01083 0.30% Castro::computeNewDt() 9 0.008595 0.0086 0.008603 0.24% Castro::initMFs() 1 0.00696 0.007048 0.007384 0.20% AmrLevel::AmrLevel(dm) 1 0.005801 0.005992 0.006629 0.18% StateData::define() 4 0.005787 0.005973 0.006614 0.18% Castro::enforce_min_density() 62 0.005867 0.006043 0.006273 0.17% Castro::swap_state_time_levels() 10 0.00346 0.004708 0.005166 0.14% Castro::finalize_advance() 10 0.003087 0.003895 0.004813 0.13% Castro::post_regrid() 1 0.001506 0.001611 0.001853 0.05% Castro::buildMetrics() 1 0.001744 0.001774 0.001793 0.05% Amr::InitAmr() 1 0.0002877 0.0003225 0.0004655 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.313e-05 0.0001512 0.0001823 0.01% DistributionMapping::LeastUsedCPUs() 1 7.775e-06 0.0001453 0.000176 0.00% FabArrayBase::getCPC() 41 7.128e-05 8.017e-05 9.594e-05 0.00% Castro::enforce_consistent_e() 1 7.701e-05 8.461e-05 9.153e-05 0.00% Amr::writeSmallPlotFile() 1 2.835e-05 4.8e-05 6.376e-05 0.00% Castro::enforce_speed_limit() 62 2.532e-05 3.207e-05 3.709e-05 0.00% FabArrayBase::CPC::define() 2 2.143e-05 2.616e-05 3.487e-05 0.00% Amr::initSubcycle() 1 8.573e-06 1.047e-05 2.017e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.36e-05 1.5e-05 0.00% Castro::FluxRegCrseInit 10 5.733e-06 8.914e-06 1.448e-05 0.00% Gravity::set_mass_offset() 10 8.652e-06 1.055e-05 1.215e-05 0.00% Castro::create_source_corrector() 10 7.865e-06 8.754e-06 1.026e-05 0.00% Castro::retry_advance_ctu() 10 6.334e-06 7.145e-06 7.705e-06 0.00% Castro::FluxRegFineAdd() 10 1.917e-06 2.252e-06 2.558e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.037e-06 1.225e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-52-g98d22d21af45) finalized