MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.07-53-gcf8d9f8e233b) initialized Starting run at 05:22:12 UTC on 2023-08-01. Successfully read inputs file ... Castro git describe: 23.07-20-g4174f17eb AMReX git describe: 23.07-53-gcf8d9f8e2 Microphysics git describe: 23.07-48-g588beb9c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015491041 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369687405 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347548136 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331904443 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331705586 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354082668 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349627795 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318088227 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.362470339 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.330898748 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316325018 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010525292 seconds Ending run at 05:22:16 UTC on 2023-08-01. Run time = 3.632939696 Run time without initialization = 3.430229421 Average number of zones advanced per microsecond: 0.764 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.631 ... 3.632 ... 3.633 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2928 2.3771 2.4511 67.47% Gravity::make_radial_gravity() 21 0.3197 0.328 0.3415 9.40% check_for_negative_density() 10 0.04324 0.1175 0.2045 5.63% Castro::initData() 1 0.04075 0.08596 0.136 3.74% Castro::estTimeStep() 21 0.02271 0.08492 0.1219 3.36% FabArray::ParallelCopy_finish() 41 0.03769 0.06251 0.09456 2.60% amrex::Copy() 193 0.06416 0.07715 0.08631 2.38% FabArray::setVal() 143 0.06396 0.07233 0.08469 2.33% Castro::reset_internal_energy(Fab) 1008 0.04844 0.04968 0.051 1.40% Castro::normalize_species() 62 0.04113 0.0425 0.0439 1.21% FabArray::ParallelCopy_nowait() 41 0.03566 0.04043 0.04264 1.17% StateData::FillBoundary(geom) 41 0.03468 0.03693 0.04018 1.11% FillPatchIterator::Initialize 41 0.02814 0.03295 0.0373 1.03% Castro::construct_new_gravity_source() 10 0.02246 0.02569 0.03039 0.84% Gravity::interpolate_monopole_grav() 21 0.02775 0.02859 0.03028 0.83% Castro::initialize_do_advance() 10 0.01196 0.01776 0.02229 0.61% Castro::computeTemp() 63 0.01806 0.01949 0.0202 0.56% VisMF::Write(FabArray) 2 0.0129 0.01401 0.01674 0.46% FabArray::Saxpy() 20 0.01101 0.01325 0.01432 0.39% Castro::initialize_advance() 10 0.004069 0.01051 0.01424 0.39% FabArray::setDomainBndry() 41 0.008537 0.0112 0.01275 0.35% MultiFab::contains_nan() 20 0.01081 0.01139 0.01217 0.33% Amr::writePlotFile() 2 0.006741 0.009528 0.0117 0.32% Castro::construct_old_gravity_source() 10 0.007105 0.009713 0.01049 0.29% Castro::initMFs() 1 0.006806 0.008087 0.01014 0.28% StateData::define() 4 0.005628 0.006616 0.008302 0.23% main() 1 0.004741 0.005866 0.006581 0.18% Castro::enforce_min_density() 62 0.005871 0.00619 0.006544 0.18% Castro::construct_new_source() 50 0.005746 0.00627 0.006502 0.18% Castro::swap_state_time_levels() 10 0.003353 0.004404 0.004779 0.13% Gravity::get_new_grav_vector() 11 0.003086 0.003608 0.003975 0.11% Amr::coarseTimeStep() 10 0.001736 0.002609 0.003444 0.09% Castro::buildMetrics() 1 0.001613 0.001929 0.002406 0.07% Gravity::get_old_grav_vector() 10 0.001658 0.001964 0.002373 0.07% Castro::finalize_do_advance() 10 0.0005694 0.001568 0.001909 0.05% AmrLevel::FillPatch() 41 0.000901 0.001061 0.001188 0.03% Amr::InitAmr() 1 0.000265 0.0003558 0.0004839 0.01% Amr::timeStep() 10 0.0001764 0.0002473 0.0004467 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002821 0.0002971 0.0003432 0.01% DistributionMapping::LeastUsedCPUs() 1 7.537e-06 0.0001635 0.0002679 0.01% Castro::do_advance_ctu() 10 0.0001573 0.0001861 0.0002366 0.01% Castro::clean_state() 62 0.000149 0.0001714 0.0002042 0.01% FillPatchIterator::FillFromLevel0() 41 0.000104 0.0001186 0.0001553 0.00% Castro::do_old_sources() 10 8.348e-05 0.000107 0.000129 0.00% Castro::finalize_advance() 10 9.596e-05 0.0001105 0.0001233 0.00% StateDataPhysBCFunct::() 41 8.712e-05 9.902e-05 0.0001153 0.00% Castro::enforce_consistent_e() 1 7.703e-05 8.788e-05 0.00011 0.00% Castro::construct_old_source() 50 5.789e-05 7.328e-05 9.928e-05 0.00% FabArray::ParallelCopy() 41 7.525e-05 8.447e-05 9.665e-05 0.00% Castro::Castro() 1 5.325e-05 6.739e-05 9.617e-05 0.00% FillPatchSingleLevel 41 7.284e-05 8.208e-05 9.248e-05 0.00% Amr::FinalizeInit() 1 4.129e-06 1.601e-05 9.216e-05 0.00% Castro::do_new_sources() 10 5.932e-05 6.815e-05 7.23e-05 0.00% FabArrayBase::getCPC() 41 5.346e-05 6.134e-05 7.183e-05 0.00% Castro::subcycle_advance_ctu() 10 4.372e-05 5.465e-05 7.125e-05 0.00% Amr::writeSmallPlotFile() 1 3.152e-05 5.292e-05 6.493e-05 0.00% Castro::construct_old_gravity() 10 4.538e-05 5.263e-05 6.01e-05 0.00% Castro::construct_new_gravity() 10 3.523e-05 4.699e-05 5.962e-05 0.00% Castro::advance() 10 4.108e-05 4.68e-05 5.707e-05 0.00% Castro::apply_source_to_state() 20 4.27e-05 4.859e-05 5.638e-05 0.00% Castro::enforce_speed_limit() 62 2.921e-05 3.311e-05 4.743e-05 0.00% Amr::defBaseLevel() 1 2.355e-05 2.96e-05 3.968e-05 0.00% FabArrayBase::CPC::define() 2 2.174e-05 2.515e-05 3.637e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.022e-05 2.641e-05 3.544e-05 0.00% Castro::expand_state() 10 2.043e-05 2.618e-05 3.105e-05 0.00% Castro::check_for_nan() 20 1.978e-05 2.114e-05 2.309e-05 0.00% Gravity::swapTimeLevels() 10 1.309e-05 1.598e-05 2.213e-05 0.00% Castro::post_timestep() 10 1.388e-05 1.57e-05 2.018e-05 0.00% Amr::initSubcycle() 1 8.731e-06 1.105e-05 1.617e-05 0.00% Gravity::set_mass_offset() 10 9.261e-06 1.209e-05 1.428e-05 0.00% Castro::computeNewDt() 9 9.116e-06 1.24e-05 1.361e-05 0.00% Castro::create_source_corrector() 10 7.668e-06 8.837e-06 1.046e-05 0.00% Castro::FluxRegCrseInit 10 6.65e-06 7.919e-06 8.758e-06 0.00% Castro::retry_advance_ctu() 10 6.145e-06 7.278e-06 8.483e-06 0.00% Amr::initialInit() 1 1.6e-06 3.165e-06 7.257e-06 0.00% Castro::post_regrid() 1 2.092e-06 3.524e-06 6.819e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.747e-06 4.622e-06 5.771e-06 0.00% Castro::computeInitialDt() 2 3.963e-06 4.554e-06 5.498e-06 0.00% Amr::InitializeInit() 1 2.206e-06 2.696e-06 4.989e-06 0.00% Castro::post_init() 1 2.501e-06 3.779e-06 4.876e-06 0.00% Amr::init() 1 1.489e-06 2.3e-06 3.426e-06 0.00% Castro::FluxRegFineAdd() 10 1.951e-06 2.366e-06 3.096e-06 0.00% DistributionMapping::Distribute() 1 8.12e-07 1.084e-06 1.321e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.631 3.632 3.633 100.00% Amr::coarseTimeStep() 10 3.413 3.413 3.413 93.95% Amr::timeStep() 10 3.4 3.401 3.402 93.63% Castro::advance() 10 3.384 3.385 3.386 93.19% Castro::subcycle_advance_ctu() 10 3.297 3.306 3.315 91.24% Castro::do_advance_ctu() 10 3.297 3.306 3.315 91.23% Castro::construct_ctu_hydro_source() 10 2.513 2.516 2.519 69.32% Gravity::make_radial_gravity() 21 0.3355 0.3445 0.3547 9.76% Gravity::get_new_grav_vector() 11 0.23 0.2313 0.233 6.41% AmrLevel::FillPatch() 41 0.1941 0.2145 0.2303 6.34% Castro::construct_old_gravity() 10 0.1918 0.2004 0.209 5.75% Gravity::get_old_grav_vector() 10 0.1911 0.1996 0.2084 5.74% Castro::construct_new_gravity() 10 0.2057 0.2069 0.2079 5.72% FillPatchIterator::Initialize 41 0.164 0.1845 0.2046 5.63% check_for_negative_density() 10 0.04324 0.1175 0.2045 5.63% Amr::init() 1 0.202 0.2022 0.2023 5.57% Castro::initialize_do_advance() 10 0.1656 0.1783 0.1899 5.23% Amr::initialInit() 1 0.1863 0.1866 0.1869 5.15% FillPatchIterator::FillFromLevel0() 41 0.1152 0.1403 0.1679 4.62% FillPatchSingleLevel 41 0.1151 0.1402 0.1677 4.62% Amr::InitializeInit() 1 0.06064 0.1085 0.1585 4.36% Amr::defBaseLevel() 1 0.06063 0.1085 0.1585 4.36% Castro::initData() 1 0.04448 0.08984 0.1403 3.86% Castro::expand_state() 10 0.1081 0.1238 0.1355 3.73% FabArray::ParallelCopy() 41 0.07891 0.1031 0.1304 3.59% Amr::FinalizeInit() 1 0.02824 0.07814 0.1259 3.47% Castro::estTimeStep() 21 0.02271 0.08492 0.1219 3.36% Castro::clean_state() 62 0.1144 0.1173 0.1199 3.30% Castro::computeInitialDt() 2 0.002215 0.05221 0.1 2.75% Castro::do_old_sources() 10 0.08986 0.09439 0.09829 2.71% FabArray::ParallelCopy_finish() 41 0.03769 0.06251 0.09456 2.60% amrex::Copy() 193 0.06416 0.07715 0.08631 2.38% FabArray::setVal() 143 0.06396 0.07233 0.08469 2.33% Castro::initialize_advance() 10 0.06507 0.07465 0.08341 2.30% Castro::do_new_sources() 10 0.05957 0.06805 0.08027 2.21% Castro::computeTemp() 63 0.06751 0.06946 0.07149 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04873 0.04997 0.05129 1.41% Castro::reset_internal_energy(Fab) 1008 0.04844 0.04968 0.051 1.40% Castro::normalize_species() 62 0.04113 0.0425 0.0439 1.21% FabArray::ParallelCopy_nowait() 41 0.03577 0.04052 0.04272 1.18% StateDataPhysBCFunct::() 41 0.03477 0.03702 0.04027 1.11% StateData::FillBoundary(geom) 41 0.03468 0.03693 0.04018 1.11% Castro::construct_new_source() 50 0.02868 0.03196 0.03689 1.02% Castro::finalize_do_advance() 10 0.01341 0.0257 0.03413 0.94% Castro::construct_new_gravity_source() 10 0.02246 0.02569 0.03039 0.84% Gravity::interpolate_monopole_grav() 21 0.02775 0.02859 0.03028 0.83% Amr::writePlotFile() 2 0.02599 0.02619 0.02641 0.73% Castro::post_init() 1 0.02475 0.02529 0.02558 0.70% VisMF::Write(FabArray) 2 0.0129 0.01401 0.01674 0.46% Castro::post_timestep() 10 0.01577 0.01604 0.01631 0.45% Castro::Castro() 1 0.01023 0.0118 0.01439 0.40% Castro::apply_source_to_state() 20 0.01107 0.0133 0.01437 0.40% FabArray::Saxpy() 20 0.01101 0.01325 0.01432 0.39% FabArray::setDomainBndry() 41 0.008537 0.0112 0.01275 0.35% Castro::check_for_nan() 20 0.01083 0.01141 0.01219 0.34% MultiFab::contains_nan() 20 0.01081 0.01139 0.01217 0.33% Castro::construct_old_source() 50 0.007163 0.009787 0.01059 0.29% Castro::construct_old_gravity_source() 10 0.007105 0.009713 0.01049 0.29% Castro::initMFs() 1 0.006806 0.008087 0.01014 0.28% Castro::computeNewDt() 9 0.008594 0.008603 0.00861 0.24% AmrLevel::AmrLevel(dm) 1 0.005656 0.006643 0.008329 0.23% StateData::define() 4 0.005628 0.006616 0.008302 0.23% Castro::enforce_min_density() 62 0.005871 0.00619 0.006544 0.18% Castro::swap_state_time_levels() 10 0.003353 0.004404 0.004779 0.13% Castro::finalize_advance() 10 0.003069 0.0039 0.004765 0.13% Castro::buildMetrics() 1 0.001722 0.002074 0.002626 0.07% Castro::post_regrid() 1 0.001531 0.001705 0.002052 0.06% Amr::InitAmr() 1 0.0002737 0.0003669 0.0005001 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.334e-05 0.0001692 0.0002747 0.01% DistributionMapping::LeastUsedCPUs() 1 7.537e-06 0.0001635 0.0002679 0.01% Castro::enforce_consistent_e() 1 7.703e-05 8.788e-05 0.00011 0.00% FabArrayBase::getCPC() 41 7.834e-05 8.648e-05 0.0001058 0.00% Amr::writeSmallPlotFile() 1 3.152e-05 5.292e-05 6.493e-05 0.00% Castro::enforce_speed_limit() 62 2.921e-05 3.311e-05 4.743e-05 0.00% FabArrayBase::CPC::define() 2 2.174e-05 2.515e-05 3.637e-05 0.00% Gravity::swapTimeLevels() 10 1.309e-05 1.598e-05 2.213e-05 0.00% Amr::initSubcycle() 1 8.731e-06 1.105e-05 1.617e-05 0.00% Gravity::set_mass_offset() 10 9.261e-06 1.209e-05 1.428e-05 0.00% Castro::create_source_corrector() 10 7.668e-06 8.837e-06 1.046e-05 0.00% Castro::FluxRegCrseInit 10 6.65e-06 7.919e-06 8.758e-06 0.00% Castro::retry_advance_ctu() 10 6.145e-06 7.278e-06 8.483e-06 0.00% Castro::FluxRegFineAdd() 10 1.951e-06 2.366e-06 3.096e-06 0.00% DistributionMapping::Distribute() 1 8.12e-07 1.084e-06 1.321e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 44 B 117 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.07-53-gcf8d9f8e233b) finalized