MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-4-g67b8a5b04b7f) initialized Starting run at 05:22:12 UTC on 2023-08-03. Successfully read inputs file ... Castro git describe: 23.08 AMReX git describe: 23.08-4-g67b8a5b04 Microphysics git describe: 23.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016465687 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361842522 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355498171 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332400837 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330967651 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352664323 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.363033309 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313821908 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31371745 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314762844 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314976716 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010390864 seconds Ending run at 05:22:16 UTC on 2023-08-03. Run time = 3.560544805 Run time without initialization = 3.370831185 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.56 ... 3.561 ... 3.561 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3290 2.3689 2.3988 67.37% Gravity::make_radial_gravity() 21 0.3238 0.3312 0.3472 9.75% Castro::estTimeStep() 21 0.04654 0.07614 0.126 3.54% Castro::initData() 1 0.03926 0.08164 0.1177 3.31% FabArray::ParallelCopy_finish() 41 0.03699 0.06912 0.09779 2.75% amrex::Copy() 193 0.06388 0.07881 0.08936 2.51% check_for_negative_density() 10 0.01097 0.04578 0.08869 2.49% FabArray::setVal() 143 0.06434 0.07433 0.08802 2.47% Castro::reset_internal_energy(Fab) 1008 0.04745 0.05023 0.05491 1.54% Castro::normalize_species() 62 0.0412 0.04244 0.04447 1.25% FabArray::ParallelCopy_nowait() 41 0.03488 0.04114 0.04329 1.22% FillPatchIterator::Initialize 41 0.02883 0.0353 0.04207 1.18% StateData::FillBoundary(geom) 41 0.03423 0.03737 0.03986 1.12% Castro::construct_new_gravity_source() 10 0.02295 0.0251 0.03445 0.97% Gravity::interpolate_monopole_grav() 21 0.02811 0.02858 0.03049 0.86% Castro::initialize_do_advance() 10 0.01272 0.01948 0.02523 0.71% Castro::computeTemp() 63 0.01781 0.0194 0.02179 0.61% VisMF::Write(FabArray) 2 0.01401 0.01468 0.01747 0.49% Castro::initialize_advance() 10 0.008768 0.0116 0.01531 0.43% FabArray::Saxpy() 20 0.01095 0.01306 0.01431 0.40% FabArray::setDomainBndry() 41 0.00884 0.01157 0.01279 0.36% MultiFab::contains_nan() 20 0.0107 0.01156 0.01247 0.35% Amr::writePlotFile() 2 0.006781 0.009819 0.01058 0.30% Castro::construct_old_gravity_source() 10 0.006903 0.009604 0.01055 0.30% Castro::initMFs() 1 0.007122 0.007688 0.008249 0.23% Castro::construct_new_source() 50 0.005767 0.006357 0.00675 0.19% StateData::define() 4 0.005707 0.006126 0.006537 0.18% Castro::enforce_min_density() 62 0.005776 0.006039 0.006415 0.18% main() 1 0.005682 0.005916 0.006063 0.17% Castro::swap_state_time_levels() 10 0.003378 0.004583 0.00532 0.15% Amr::coarseTimeStep() 10 0.001528 0.003658 0.005055 0.14% Gravity::get_new_grav_vector() 11 0.002969 0.003773 0.00438 0.12% Gravity::get_old_grav_vector() 10 0.001486 0.002028 0.00239 0.07% Castro::finalize_do_advance() 10 0.0005922 0.001856 0.002375 0.07% Castro::buildMetrics() 1 0.001611 0.00174 0.00187 0.05% AmrLevel::FillPatch() 41 0.0009155 0.001086 0.001295 0.04% Amr::InitAmr() 1 0.0002832 0.0003129 0.0004712 0.01% Amr::timeStep() 10 0.0001527 0.0002239 0.000401 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002778 0.0002989 0.0003523 0.01% Castro::do_advance_ctu() 10 0.0001564 0.0001853 0.0002248 0.01% Castro::clean_state() 62 0.0001465 0.0001733 0.0002079 0.01% DistributionMapping::LeastUsedCPUs() 1 8.088e-06 0.0001724 0.0001989 0.01% Castro::finalize_advance() 10 8.171e-05 0.0001133 0.0001544 0.00% FillPatchIterator::FillFromLevel0() 41 8.065e-05 0.0001028 0.0001212 0.00% Castro::do_old_sources() 10 7.213e-05 9.114e-05 0.0001124 0.00% StateDataPhysBCFunct::() 41 8.073e-05 9.554e-05 0.0001092 0.00% Castro::enforce_consistent_e() 1 7.485e-05 8.701e-05 0.0001005 0.00% FabArray::ParallelCopy() 41 6.658e-05 7.856e-05 8.812e-05 0.00% Castro::construct_old_source() 50 5.112e-05 6.903e-05 8.763e-05 0.00% Amr::FinalizeInit() 1 4.316e-06 1.549e-05 8.756e-05 0.00% Castro::do_new_sources() 10 5.957e-05 6.802e-05 8.511e-05 0.00% Castro::apply_source_to_state() 20 3.185e-05 4.639e-05 8.496e-05 0.00% FillPatchSingleLevel 41 5.976e-05 6.947e-05 7.423e-05 0.00% FabArrayBase::getCPC() 41 4.412e-05 5.527e-05 7.069e-05 0.00% Castro::Castro() 1 5.452e-05 6.285e-05 6.891e-05 0.00% Amr::writeSmallPlotFile() 1 2.66e-05 5.576e-05 6.637e-05 0.00% Castro::advance() 10 3.544e-05 4.663e-05 6.538e-05 0.00% Castro::retry_advance_ctu() 10 7.11e-06 1.453e-05 6.066e-05 0.00% Castro::construct_old_gravity() 10 4.125e-05 4.684e-05 5.964e-05 0.00% Castro::subcycle_advance_ctu() 10 3.868e-05 4.872e-05 5.803e-05 0.00% Castro::construct_new_gravity() 10 3.391e-05 3.895e-05 4.582e-05 0.00% Castro::enforce_speed_limit() 62 2.495e-05 3.12e-05 3.917e-05 0.00% Amr::defBaseLevel() 1 2.631e-05 3.175e-05 3.613e-05 0.00% Castro::expand_state() 10 1.852e-05 2.471e-05 3.082e-05 0.00% FabArrayBase::CPC::define() 2 1.881e-05 2.432e-05 2.88e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.638e-05 1.961e-05 2.348e-05 0.00% Castro::FluxRegCrseInit 10 6.511e-06 9.695e-06 2.347e-05 0.00% Castro::check_for_nan() 20 1.918e-05 2.053e-05 2.256e-05 0.00% Gravity::set_mass_offset() 10 8.44e-06 1.223e-05 1.957e-05 0.00% Castro::post_timestep() 10 1.359e-05 1.478e-05 1.695e-05 0.00% Gravity::swapTimeLevels() 10 1.055e-05 1.312e-05 1.498e-05 0.00% Castro::computeNewDt() 9 1.065e-05 1.203e-05 1.36e-05 0.00% Amr::initSubcycle() 1 8.572e-06 9.423e-06 1e-05 0.00% Castro::create_source_corrector() 10 6.5e-06 8.904e-06 9.778e-06 0.00% Amr::initialInit() 1 1.264e-06 2.444e-06 8.224e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.775e-06 5.083e-06 6.72e-06 0.00% Amr::InitializeInit() 1 1.939e-06 2.626e-06 6.267e-06 0.00% Castro::computeInitialDt() 2 3.714e-06 4.885e-06 6.021e-06 0.00% Castro::post_init() 1 3.049e-06 4.059e-06 4.812e-06 0.00% Castro::post_regrid() 1 1.721e-06 2.669e-06 4.074e-06 0.00% Amr::init() 1 1.893e-06 2.506e-06 2.925e-06 0.00% Castro::FluxRegFineAdd() 10 1.999e-06 2.305e-06 2.614e-06 0.00% DistributionMapping::Distribute() 1 9.22e-07 1.134e-06 1.413e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.56 3.56 3.561 100.00% Amr::coarseTimeStep() 10 3.354 3.354 3.354 94.21% Amr::timeStep() 10 3.34 3.341 3.343 93.89% Castro::advance() 10 3.324 3.325 3.327 93.43% Castro::subcycle_advance_ctu() 10 3.233 3.244 3.252 91.33% Castro::do_advance_ctu() 10 3.233 3.244 3.252 91.32% Castro::construct_ctu_hydro_source() 10 2.432 2.436 2.441 68.55% Gravity::make_radial_gravity() 21 0.3398 0.3481 0.3611 10.14% AmrLevel::FillPatch() 41 0.2002 0.2252 0.2459 6.91% Gravity::get_new_grav_vector() 11 0.2276 0.2289 0.2297 6.45% Castro::construct_old_gravity() 10 0.202 0.2063 0.2169 6.09% Gravity::get_old_grav_vector() 10 0.201 0.2055 0.2163 6.07% FillPatchIterator::Initialize 41 0.171 0.1949 0.2137 6.00% Castro::construct_new_gravity() 10 0.1997 0.2004 0.2008 5.64% Castro::initialize_do_advance() 10 0.1778 0.1885 0.1997 5.61% Amr::init() 1 0.1891 0.1893 0.1893 5.32% Amr::initialInit() 1 0.1722 0.1725 0.1727 4.85% FillPatchIterator::FillFromLevel0() 41 0.1193 0.1481 0.1673 4.70% FillPatchSingleLevel 41 0.1192 0.148 0.1672 4.70% Castro::expand_state() 10 0.1161 0.1318 0.1456 4.09% Amr::InitializeInit() 1 0.06002 0.1036 0.1405 3.95% Amr::defBaseLevel() 1 0.06001 0.1036 0.1405 3.95% FabArray::ParallelCopy() 41 0.07918 0.1104 0.1328 3.73% Castro::estTimeStep() 21 0.04654 0.07614 0.126 3.54% Castro::clean_state() 62 0.1127 0.1176 0.125 3.51% Castro::initData() 1 0.04319 0.08564 0.1214 3.41% Amr::FinalizeInit() 1 0.0317 0.06891 0.1124 3.16% Castro::do_old_sources() 10 0.09342 0.09879 0.1036 2.91% FabArray::ParallelCopy_finish() 41 0.03699 0.06912 0.09779 2.75% amrex::Copy() 193 0.06388 0.07881 0.08936 2.51% check_for_negative_density() 10 0.01097 0.04578 0.08869 2.49% FabArray::setVal() 143 0.06434 0.07433 0.08802 2.47% Castro::initialize_advance() 10 0.06952 0.07678 0.08765 2.46% Castro::do_new_sources() 10 0.06067 0.06756 0.08467 2.38% Castro::computeInitialDt() 2 0.002186 0.03911 0.08271 2.32% Castro::computeTemp() 63 0.06554 0.06992 0.07706 2.16% Castro::reset_internal_energy(MultiFab) 63 0.04774 0.05053 0.05527 1.55% Castro::reset_internal_energy(Fab) 1008 0.04745 0.05023 0.05491 1.54% Castro::normalize_species() 62 0.0412 0.04244 0.04447 1.25% FabArray::ParallelCopy_nowait() 41 0.03497 0.04122 0.04337 1.22% Castro::construct_new_source() 50 0.02925 0.03146 0.04097 1.15% StateDataPhysBCFunct::() 41 0.03433 0.03746 0.03996 1.12% StateData::FillBoundary(geom) 41 0.03423 0.03737 0.03986 1.12% Castro::finalize_do_advance() 10 0.01322 0.03036 0.03763 1.06% Castro::construct_new_gravity_source() 10 0.02295 0.0251 0.03445 0.97% Gravity::interpolate_monopole_grav() 21 0.02811 0.02858 0.03049 0.86% Castro::post_init() 1 0.02923 0.02938 0.02962 0.83% Amr::writePlotFile() 2 0.02704 0.02724 0.02753 0.77% VisMF::Write(FabArray) 2 0.01401 0.01468 0.01747 0.49% Castro::post_timestep() 10 0.01549 0.01583 0.01637 0.46% Castro::apply_source_to_state() 20 0.01098 0.01311 0.0144 0.40% FabArray::Saxpy() 20 0.01095 0.01306 0.01431 0.40% FabArray::setDomainBndry() 41 0.00884 0.01157 0.01279 0.36% Castro::check_for_nan() 20 0.01072 0.01158 0.01249 0.35% MultiFab::contains_nan() 20 0.0107 0.01156 0.01247 0.35% Castro::Castro() 1 0.01083 0.01159 0.01235 0.35% Castro::construct_old_source() 50 0.006954 0.009673 0.01063 0.30% Castro::construct_old_gravity_source() 10 0.006903 0.009604 0.01055 0.30% Castro::computeNewDt() 9 0.00853 0.008538 0.008543 0.24% Castro::initMFs() 1 0.007122 0.007688 0.008249 0.23% AmrLevel::AmrLevel(dm) 1 0.005729 0.006146 0.006555 0.18% StateData::define() 4 0.005707 0.006126 0.006537 0.18% Castro::enforce_min_density() 62 0.005776 0.006039 0.006415 0.18% Castro::finalize_advance() 10 0.002911 0.004017 0.005809 0.16% Castro::swap_state_time_levels() 10 0.003378 0.004583 0.00532 0.15% Castro::buildMetrics() 1 0.00173 0.00188 0.002022 0.06% Castro::post_regrid() 1 0.001524 0.001645 0.001885 0.05% Amr::InitAmr() 1 0.0002918 0.0003223 0.0004812 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.314e-05 0.0001786 0.0002063 0.01% DistributionMapping::LeastUsedCPUs() 1 8.088e-06 0.0001724 0.0001989 0.01% Castro::enforce_consistent_e() 1 7.485e-05 8.701e-05 0.0001005 0.00% FabArrayBase::getCPC() 41 6.853e-05 7.959e-05 9.31e-05 0.00% Amr::writeSmallPlotFile() 1 2.66e-05 5.576e-05 6.637e-05 0.00% Castro::retry_advance_ctu() 10 7.11e-06 1.453e-05 6.066e-05 0.00% Castro::enforce_speed_limit() 62 2.495e-05 3.12e-05 3.917e-05 0.00% FabArrayBase::CPC::define() 2 1.881e-05 2.432e-05 2.88e-05 0.00% Castro::FluxRegCrseInit 10 6.511e-06 9.695e-06 2.347e-05 0.00% Gravity::set_mass_offset() 10 8.44e-06 1.223e-05 1.957e-05 0.00% Gravity::swapTimeLevels() 10 1.055e-05 1.312e-05 1.498e-05 0.00% Amr::initSubcycle() 1 8.572e-06 9.423e-06 1e-05 0.00% Castro::create_source_corrector() 10 6.5e-06 8.904e-06 9.778e-06 0.00% Castro::FluxRegFineAdd() 10 1.999e-06 2.305e-06 2.614e-06 0.00% DistributionMapping::Distribute() 1 9.22e-07 1.134e-06 1.413e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 34 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-4-g67b8a5b04b7f) finalized