MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-8-g1f1a661440d4) initialized Starting run at 05:25:36 UTC on 2023-08-04. Successfully read inputs file ... Castro git describe: 23.08 AMReX git describe: 23.08-8-g1f1a66144 Microphysics git describe: 23.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015515034 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.395457035 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.412923387 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.368983141 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335535233 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368010972 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335482817 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309665472 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310676636 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313140312 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311731869 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010582123 seconds Ending run at 05:25:40 UTC on 2023-08-04. Run time = 3.663485678 Run time without initialization = 3.479384261 Average number of zones advanced per microsecond: 0.753 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.663 ... 3.663 ... 3.664 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3351 2.3816 2.4731 67.51% Gravity::make_radial_gravity() 21 0.3377 0.3484 0.3618 9.87% check_for_negative_density() 10 0.05304 0.1503 0.1978 5.40% Castro::initData() 1 0.03852 0.07663 0.1159 3.16% Castro::estTimeStep() 21 0.038 0.07078 0.09883 2.70% amrex::Copy() 193 0.06614 0.07873 0.09003 2.46% FabArray::ParallelCopy_finish() 41 0.03761 0.05698 0.08316 2.27% FabArray::setVal() 143 0.06441 0.07113 0.08154 2.23% Castro::reset_internal_energy(Fab) 1008 0.04849 0.04994 0.05161 1.41% Castro::normalize_species() 62 0.04057 0.04205 0.04552 1.24% FabArray::ParallelCopy_nowait() 41 0.03706 0.04159 0.0436 1.19% StateData::FillBoundary(geom) 41 0.03427 0.0375 0.04217 1.15% FillPatchIterator::Initialize 41 0.02871 0.03454 0.03677 1.00% Gravity::interpolate_monopole_grav() 21 0.02779 0.02844 0.03097 0.85% Castro::construct_new_gravity_source() 10 0.0222 0.02453 0.0278 0.76% Castro::computeTemp() 63 0.01762 0.01952 0.02099 0.57% Castro::initialize_do_advance() 10 0.01184 0.01777 0.02032 0.55% VisMF::Write(FabArray) 2 0.0132 0.01405 0.01674 0.46% Castro::initialize_advance() 10 0.00863 0.01151 0.01482 0.40% FabArray::Saxpy() 20 0.01174 0.01283 0.01364 0.37% MultiFab::contains_nan() 20 0.01079 0.01191 0.01349 0.37% FabArray::setDomainBndry() 41 0.009204 0.01172 0.01279 0.35% Amr::writePlotFile() 2 0.006822 0.009529 0.01135 0.31% Castro::construct_old_gravity_source() 10 0.007828 0.009693 0.01027 0.28% Castro::initMFs() 1 0.007047 0.007062 0.007069 0.19% Castro::enforce_min_density() 62 0.005823 0.006153 0.006641 0.18% Castro::construct_new_source() 50 0.005983 0.006229 0.006491 0.18% main() 1 0.005749 0.006199 0.006419 0.18% StateData::define() 4 0.005762 0.005776 0.005789 0.16% Castro::swap_state_time_levels() 10 0.00338 0.004433 0.004779 0.13% Amr::coarseTimeStep() 10 0.00117 0.003109 0.004526 0.12% Gravity::get_new_grav_vector() 11 0.002995 0.003521 0.003896 0.11% Gravity::get_old_grav_vector() 10 0.001589 0.002052 0.002391 0.07% Castro::finalize_do_advance() 10 0.0006619 0.001663 0.00208 0.06% Castro::buildMetrics() 1 0.00163 0.001659 0.001678 0.05% AmrLevel::FillPatch() 41 0.0009065 0.0011 0.001296 0.04% Amr::timeStep() 10 0.000165 0.0002406 0.0004287 0.01% Amr::InitAmr() 1 0.000265 0.0002853 0.0004087 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002755 0.0002947 0.0003216 0.01% Castro::do_advance_ctu() 10 0.0001479 0.0001672 0.0001976 0.01% Castro::clean_state() 62 0.0001497 0.0001634 0.0001704 0.00% DistributionMapping::LeastUsedCPUs() 1 6.3e-06 0.0001156 0.0001349 0.00% Castro::finalize_advance() 10 8.914e-05 0.0001043 0.0001292 0.00% FillPatchIterator::FillFromLevel0() 41 9.602e-05 0.0001065 0.0001247 0.00% StateDataPhysBCFunct::() 41 9.398e-05 9.836e-05 0.0001105 0.00% Castro::do_old_sources() 10 7.871e-05 9.617e-05 0.0001069 0.00% Amr::FinalizeInit() 1 4.387e-06 1.765e-05 0.0001049 0.00% FillPatchSingleLevel 41 7.03e-05 7.835e-05 9.124e-05 0.00% FabArray::ParallelCopy() 41 7.19e-05 7.913e-05 8.907e-05 0.00% Castro::enforce_consistent_e() 1 7.811e-05 8.297e-05 8.767e-05 0.00% Castro::Castro() 1 6.416e-05 7.38e-05 8.72e-05 0.00% Castro::construct_old_source() 50 5.341e-05 6.807e-05 7.855e-05 0.00% Castro::do_new_sources() 10 5.459e-05 6.502e-05 7.691e-05 0.00% Amr::writeSmallPlotFile() 1 2.873e-05 5.623e-05 7.094e-05 0.00% FabArrayBase::getCPC() 41 5.027e-05 5.61e-05 6.584e-05 0.00% Amr::defBaseLevel() 1 3.863e-05 4.805e-05 6.052e-05 0.00% Castro::subcycle_advance_ctu() 10 4.568e-05 5.012e-05 5.579e-05 0.00% Castro::advance() 10 3.898e-05 4.611e-05 5.548e-05 0.00% Castro::apply_source_to_state() 20 3.874e-05 4.408e-05 5.367e-05 0.00% Castro::construct_old_gravity() 10 4.357e-05 4.802e-05 5.206e-05 0.00% Castro::construct_new_gravity() 10 3.674e-05 3.976e-05 4.51e-05 0.00% Castro::expand_state() 10 2.087e-05 2.606e-05 4.017e-05 0.00% Castro::enforce_speed_limit() 62 2.644e-05 3.13e-05 3.621e-05 0.00% FabArrayBase::CPC::define() 2 2.058e-05 2.533e-05 3.066e-05 0.00% Castro::check_for_nan() 20 1.977e-05 2.185e-05 2.396e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.365e-05 1.949e-05 2.395e-05 0.00% Gravity::swapTimeLevels() 10 1.079e-05 1.401e-05 1.767e-05 0.00% Castro::post_timestep() 10 1.311e-05 1.434e-05 1.575e-05 0.00% Castro::create_source_corrector() 10 7.052e-06 9.533e-06 1.43e-05 0.00% Castro::computeNewDt() 9 9.888e-06 1.281e-05 1.392e-05 0.00% Gravity::set_mass_offset() 10 8.184e-06 1.067e-05 1.24e-05 0.00% Castro::FluxRegCrseInit 10 6.571e-06 8.15e-06 9.708e-06 0.00% Amr::initSubcycle() 1 8.396e-06 9.035e-06 9.614e-06 0.00% Castro::retry_advance_ctu() 10 6.321e-06 7.633e-06 9.613e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.692e-06 4.506e-06 7.211e-06 0.00% Castro::computeInitialDt() 2 3.936e-06 4.675e-06 5.136e-06 0.00% Castro::post_init() 1 2.923e-06 3.862e-06 5.027e-06 0.00% Amr::InitializeInit() 1 2.054e-06 2.543e-06 4.617e-06 0.00% Castro::post_regrid() 1 1.796e-06 3.025e-06 4.273e-06 0.00% Amr::init() 1 2.009e-06 2.373e-06 2.94e-06 0.00% Castro::FluxRegFineAdd() 10 2.001e-06 2.264e-06 2.593e-06 0.00% Amr::initialInit() 1 1.542e-06 1.804e-06 2.157e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.063e-06 1.492e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.663 3.663 3.664 100.00% Amr::coarseTimeStep() 10 3.462 3.462 3.462 94.51% Amr::timeStep() 10 3.448 3.449 3.451 94.21% Castro::advance() 10 3.433 3.433 3.435 93.75% Castro::subcycle_advance_ctu() 10 3.349 3.356 3.361 91.73% Castro::do_advance_ctu() 10 3.349 3.356 3.36 91.73% Castro::construct_ctu_hydro_source() 10 2.551 2.554 2.557 69.78% Gravity::make_radial_gravity() 21 0.3534 0.3649 0.376 10.26% Gravity::get_new_grav_vector() 11 0.2396 0.2419 0.2438 6.65% AmrLevel::FillPatch() 41 0.1952 0.2142 0.225 6.14% Castro::construct_old_gravity() 10 0.2028 0.209 0.2193 5.99% Gravity::get_old_grav_vector() 10 0.2021 0.2084 0.2187 5.97% Castro::construct_new_gravity() 10 0.214 0.2154 0.2164 5.91% check_for_negative_density() 10 0.05304 0.1503 0.1978 5.40% FillPatchIterator::Initialize 41 0.1664 0.1828 0.1951 5.33% Castro::initialize_do_advance() 10 0.1641 0.1758 0.1839 5.02% Amr::init() 1 0.1836 0.1837 0.1837 5.01% Amr::initialInit() 1 0.1677 0.1681 0.1682 4.59% FillPatchIterator::FillFromLevel0() 41 0.1197 0.1365 0.1572 4.29% FillPatchSingleLevel 41 0.1196 0.1364 0.1571 4.29% Amr::InitializeInit() 1 0.0607 0.09874 0.1379 3.76% Amr::defBaseLevel() 1 0.06069 0.09874 0.1379 3.76% Castro::expand_state() 10 0.1083 0.1207 0.128 3.49% Castro::clean_state() 62 0.1123 0.1172 0.1232 3.36% FabArray::ParallelCopy() 41 0.07988 0.09873 0.1204 3.29% Castro::initData() 1 0.04268 0.08076 0.1199 3.27% Amr::FinalizeInit() 1 0.03025 0.06931 0.1076 2.94% Castro::do_old_sources() 10 0.09391 0.0985 0.1013 2.76% Castro::estTimeStep() 21 0.038 0.07078 0.09883 2.70% amrex::Copy() 193 0.06614 0.07873 0.09003 2.46% FabArray::ParallelCopy_finish() 41 0.03761 0.05698 0.08316 2.27% Castro::initialize_advance() 10 0.06839 0.07355 0.08156 2.23% FabArray::setVal() 143 0.06441 0.07113 0.08154 2.23% Castro::computeInitialDt() 2 0.001991 0.04112 0.07918 2.16% Castro::do_new_sources() 10 0.05866 0.06456 0.07335 2.00% Castro::computeTemp() 63 0.0664 0.06975 0.07247 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04878 0.05023 0.0519 1.42% Castro::reset_internal_energy(Fab) 1008 0.04849 0.04994 0.05161 1.41% Castro::normalize_species() 62 0.04057 0.04205 0.04552 1.24% FabArray::ParallelCopy_nowait() 41 0.03715 0.04167 0.04368 1.19% StateDataPhysBCFunct::() 41 0.03436 0.0376 0.04227 1.15% StateData::FillBoundary(geom) 41 0.03427 0.0375 0.04217 1.15% Castro::construct_new_source() 50 0.02841 0.03076 0.03418 0.93% Gravity::interpolate_monopole_grav() 21 0.02779 0.02844 0.03097 0.85% Castro::finalize_do_advance() 10 0.0129 0.02249 0.02908 0.79% Castro::post_init() 1 0.02724 0.02765 0.02786 0.76% Castro::construct_new_gravity_source() 10 0.0222 0.02453 0.0278 0.76% Amr::writePlotFile() 2 0.02612 0.0263 0.02667 0.73% VisMF::Write(FabArray) 2 0.0132 0.01405 0.01674 0.46% Castro::post_timestep() 10 0.01519 0.01588 0.01665 0.45% Castro::apply_source_to_state() 20 0.01179 0.01287 0.0137 0.37% FabArray::Saxpy() 20 0.01174 0.01283 0.01364 0.37% Castro::check_for_nan() 20 0.01081 0.01193 0.01351 0.37% MultiFab::contains_nan() 20 0.01079 0.01191 0.01349 0.37% FabArray::setDomainBndry() 41 0.009204 0.01172 0.01279 0.35% Castro::Castro() 1 0.01197 0.01201 0.01205 0.33% Castro::construct_old_source() 50 0.007881 0.009761 0.01034 0.28% Castro::construct_old_gravity_source() 10 0.007828 0.009693 0.01027 0.28% Castro::computeNewDt() 9 0.008847 0.008861 0.008873 0.24% Castro::initMFs() 1 0.007047 0.007062 0.007069 0.19% Castro::enforce_min_density() 62 0.005823 0.006153 0.006641 0.18% AmrLevel::AmrLevel(dm) 1 0.005776 0.005795 0.005808 0.16% StateData::define() 4 0.005762 0.005776 0.005789 0.16% Castro::swap_state_time_levels() 10 0.00338 0.004433 0.004779 0.13% Castro::finalize_advance() 10 0.002908 0.003563 0.004389 0.12% Castro::buildMetrics() 1 0.001805 0.001822 0.001834 0.05% Castro::post_regrid() 1 0.001512 0.001575 0.001657 0.05% Amr::InitAmr() 1 0.0002743 0.0002943 0.0004171 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.102e-05 0.0001212 0.0001414 0.00% DistributionMapping::LeastUsedCPUs() 1 6.3e-06 0.0001156 0.0001349 0.00% FabArrayBase::getCPC() 41 7.705e-05 8.142e-05 9.59e-05 0.00% Castro::enforce_consistent_e() 1 7.811e-05 8.297e-05 8.767e-05 0.00% Amr::writeSmallPlotFile() 1 2.873e-05 5.623e-05 7.094e-05 0.00% Castro::enforce_speed_limit() 62 2.644e-05 3.13e-05 3.621e-05 0.00% FabArrayBase::CPC::define() 2 2.058e-05 2.533e-05 3.066e-05 0.00% Gravity::swapTimeLevels() 10 1.079e-05 1.401e-05 1.767e-05 0.00% Castro::create_source_corrector() 10 7.052e-06 9.533e-06 1.43e-05 0.00% Gravity::set_mass_offset() 10 8.184e-06 1.067e-05 1.24e-05 0.00% Castro::FluxRegCrseInit 10 6.571e-06 8.15e-06 9.708e-06 0.00% Amr::initSubcycle() 1 8.396e-06 9.035e-06 9.614e-06 0.00% Castro::retry_advance_ctu() 10 6.321e-06 7.633e-06 9.613e-06 0.00% Castro::FluxRegFineAdd() 10 2.001e-06 2.264e-06 2.593e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.063e-06 1.492e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 31 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-8-g1f1a661440d4) finalized