MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-19-ge7d3d5a4fad6) initialized Starting run at 05:31:43 UTC on 2023-08-07. Successfully read inputs file ... Castro git describe: 23.08 AMReX git describe: 23.08-19-ge7d3d5a4f Microphysics git describe: 23.08-3-g3d2714f8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016646981 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371259902 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362008916 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334860817 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334383057 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360600663 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.35648311 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31940405 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.319326212 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.331757334 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318159623 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010446922 seconds Ending run at 05:31:46 UTC on 2023-08-07. Run time = 3.611088922 Run time without initialization = 3.426111845 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.61 ... 3.611 ... 3.611 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3407 2.3753 2.4494 67.83% Gravity::make_radial_gravity() 21 0.3267 0.3418 0.3568 9.88% check_for_negative_density() 10 0.0317 0.1078 0.1432 3.97% Castro::initData() 1 0.03919 0.08137 0.1142 3.16% Castro::estTimeStep() 21 0.0219 0.06506 0.1129 3.13% FabArray::setVal() 143 0.0632 0.0747 0.09008 2.49% amrex::Copy() 193 0.06578 0.07672 0.08845 2.45% FabArray::ParallelCopy_finish() 41 0.03807 0.05677 0.07601 2.10% Castro::reset_internal_energy(Fab) 1008 0.04745 0.04949 0.05196 1.44% Castro::normalize_species() 62 0.04073 0.04233 0.04641 1.29% FabArray::ParallelCopy_nowait() 41 0.03558 0.04091 0.04223 1.17% StateData::FillBoundary(geom) 41 0.03355 0.03661 0.04021 1.11% FillPatchIterator::Initialize 41 0.03006 0.03347 0.03582 0.99% Castro::construct_new_gravity_source() 10 0.02214 0.02535 0.02963 0.82% Gravity::interpolate_monopole_grav() 21 0.02805 0.02841 0.02882 0.80% Castro::initialize_do_advance() 10 0.01291 0.01821 0.02249 0.62% Castro::computeTemp() 63 0.0191 0.02019 0.02208 0.61% VisMF::Write(FabArray) 2 0.01368 0.01466 0.01754 0.49% Castro::initialize_advance() 10 0.008642 0.01167 0.01533 0.42% FabArray::Saxpy() 20 0.01068 0.01278 0.01346 0.37% FabArray::setDomainBndry() 41 0.00902 0.01106 0.01238 0.34% MultiFab::contains_nan() 20 0.01018 0.01098 0.01221 0.34% Amr::writePlotFile() 2 0.00691 0.009791 0.01073 0.30% Castro::initMFs() 1 0.00715 0.008254 0.01073 0.30% Castro::construct_old_gravity_source() 10 0.006913 0.009544 0.01026 0.28% Gravity::get_new_grav_vector() 11 0.002916 0.004284 0.008788 0.24% StateData::define() 4 0.005913 0.00668 0.00856 0.24% Castro::enforce_min_density() 62 0.006401 0.006613 0.006937 0.19% main() 1 0.005557 0.006535 0.006754 0.19% Castro::construct_new_source() 50 0.005768 0.006249 0.006578 0.18% Castro::swap_state_time_levels() 10 0.003373 0.004671 0.005434 0.15% Amr::coarseTimeStep() 10 0.001804 0.003131 0.00408 0.11% Castro::buildMetrics() 1 0.001671 0.00192 0.002478 0.07% Gravity::get_old_grav_vector() 10 0.001548 0.001939 0.002286 0.06% Castro::finalize_do_advance() 10 0.0008504 0.001729 0.00213 0.06% AmrLevel::FillPatch() 41 0.001022 0.001148 0.001351 0.04% Amr::InitAmr() 1 0.0002719 0.0003482 0.0004848 0.01% Amr::timeStep() 10 0.0001553 0.0002218 0.000391 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002768 0.0002928 0.0003128 0.01% DistributionMapping::LeastUsedCPUs() 1 6.229e-06 0.0001793 0.0002528 0.01% Castro::do_advance_ctu() 10 0.0001419 0.0001771 0.0002464 0.01% Castro::clean_state() 62 0.0001361 0.0001541 0.0001706 0.00% Castro::finalize_advance() 10 8.932e-05 0.000107 0.0001328 0.00% FillPatchIterator::FillFromLevel0() 41 8.694e-05 0.0001049 0.0001162 0.00% Castro::do_old_sources() 10 6.659e-05 9.092e-05 0.0001082 0.00% Castro::enforce_consistent_e() 1 7.939e-05 9.024e-05 0.0001038 0.00% StateDataPhysBCFunct::() 41 7.976e-05 9.159e-05 0.0001008 0.00% Castro::Castro() 1 6.103e-05 7.188e-05 8.797e-05 0.00% Amr::FinalizeInit() 1 3.771e-06 1.481e-05 8.397e-05 0.00% Castro::construct_old_source() 50 5.189e-05 6.579e-05 7.979e-05 0.00% FabArray::ParallelCopy() 41 5.876e-05 6.625e-05 7.628e-05 0.00% Castro::do_new_sources() 10 4.869e-05 6.132e-05 7.283e-05 0.00% Amr::writeSmallPlotFile() 1 2.63e-05 5.59e-05 7.174e-05 0.00% FillPatchSingleLevel 41 5.13e-05 6.226e-05 6.802e-05 0.00% Castro::subcycle_advance_ctu() 10 4.298e-05 4.966e-05 5.722e-05 0.00% FabArrayBase::getCPC() 41 4.086e-05 4.876e-05 5.641e-05 0.00% Castro::apply_source_to_state() 20 3.218e-05 4.296e-05 5.305e-05 0.00% Castro::advance() 10 3.115e-05 4.547e-05 5.278e-05 0.00% Castro::construct_old_gravity() 10 4.117e-05 4.456e-05 5.045e-05 0.00% Amr::defBaseLevel() 1 2.501e-05 3.363e-05 4.531e-05 0.00% Castro::construct_new_gravity() 10 3.553e-05 3.866e-05 4.435e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.653e-05 2.605e-05 3.541e-05 0.00% Castro::enforce_speed_limit() 62 2.684e-05 3.125e-05 3.473e-05 0.00% FabArrayBase::CPC::define() 2 2.227e-05 2.719e-05 3.403e-05 0.00% Castro::expand_state() 10 1.917e-05 2.251e-05 2.716e-05 0.00% Castro::check_for_nan() 20 1.872e-05 2.059e-05 2.212e-05 0.00% Castro::post_timestep() 10 1.186e-05 1.506e-05 1.74e-05 0.00% Amr::initSubcycle() 1 8.495e-06 1.083e-05 1.664e-05 0.00% Gravity::swapTimeLevels() 10 9.815e-06 1.262e-05 1.458e-05 0.00% Gravity::set_mass_offset() 10 8.584e-06 1.035e-05 1.365e-05 0.00% Castro::computeNewDt() 9 9.641e-06 1.102e-05 1.284e-05 0.00% Castro::create_source_corrector() 10 6.852e-06 8.309e-06 1.101e-05 0.00% Castro::retry_advance_ctu() 10 6.38e-06 7.2e-06 8.79e-06 0.00% Castro::FluxRegCrseInit 10 5.254e-06 7.066e-06 8.666e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.652e-06 5.726e-06 7.246e-06 0.00% Castro::computeInitialDt() 2 3.994e-06 4.518e-06 5.222e-06 0.00% Amr::InitializeInit() 1 1.962e-06 2.701e-06 5.088e-06 0.00% Castro::post_regrid() 1 1.751e-06 3.143e-06 4.903e-06 0.00% Castro::post_init() 1 3.156e-06 3.738e-06 4.817e-06 0.00% Amr::init() 1 2.011e-06 2.309e-06 2.79e-06 0.00% Castro::FluxRegFineAdd() 10 1.964e-06 2.152e-06 2.522e-06 0.00% Amr::initialInit() 1 1.26e-06 1.716e-06 2.086e-06 0.00% DistributionMapping::Distribute() 1 8.92e-07 1.178e-06 1.467e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.61 3.611 3.611 100.00% Amr::coarseTimeStep() 10 3.409 3.409 3.409 94.40% Amr::timeStep() 10 3.395 3.396 3.397 94.07% Castro::advance() 10 3.378 3.379 3.381 93.61% Castro::subcycle_advance_ctu() 10 3.288 3.298 3.305 91.52% Castro::do_advance_ctu() 10 3.288 3.298 3.305 91.51% Castro::construct_ctu_hydro_source() 10 2.499 2.505 2.511 69.54% Gravity::make_radial_gravity() 21 0.3451 0.3582 0.371 10.27% Gravity::get_new_grav_vector() 11 0.2282 0.2341 0.2367 6.55% AmrLevel::FillPatch() 41 0.1872 0.209 0.2253 6.24% Castro::construct_old_gravity() 10 0.2003 0.2074 0.2166 6.00% Gravity::get_old_grav_vector() 10 0.1991 0.2067 0.216 5.98% Castro::construct_new_gravity() 10 0.2007 0.206 0.2079 5.76% FillPatchIterator::Initialize 41 0.1586 0.1792 0.1955 5.41% Castro::initialize_do_advance() 10 0.1657 0.1778 0.1889 5.23% Amr::init() 1 0.1843 0.1845 0.1846 5.11% Amr::initialInit() 1 0.1676 0.1678 0.1681 4.66% FillPatchIterator::FillFromLevel0() 41 0.1188 0.1347 0.1487 4.12% FillPatchSingleLevel 41 0.1187 0.1346 0.1486 4.12% check_for_negative_density() 10 0.0317 0.1078 0.1432 3.97% Amr::InitializeInit() 1 0.06063 0.1045 0.1358 3.76% Amr::defBaseLevel() 1 0.06063 0.1045 0.1358 3.76% Castro::expand_state() 10 0.1067 0.1223 0.1342 3.72% Castro::clean_state() 62 0.1145 0.1181 0.1256 3.48% Castro::initData() 1 0.04315 0.08534 0.1184 3.28% Castro::estTimeStep() 21 0.0219 0.06506 0.1129 3.13% FabArray::ParallelCopy() 41 0.08031 0.09782 0.1117 3.09% Amr::FinalizeInit() 1 0.03195 0.06322 0.1075 2.98% Castro::do_old_sources() 10 0.09056 0.09394 0.09778 2.71% FabArray::setVal() 143 0.0632 0.0747 0.09008 2.49% amrex::Copy() 193 0.06578 0.07672 0.08845 2.45% Castro::initialize_advance() 10 0.07064 0.07761 0.0882 2.44% Castro::do_new_sources() 10 0.05915 0.06704 0.07829 2.17% Castro::computeInitialDt() 2 0.002366 0.03359 0.07758 2.15% FabArray::ParallelCopy_finish() 41 0.03807 0.05677 0.07601 2.10% Castro::computeTemp() 63 0.06685 0.06997 0.07432 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04775 0.04979 0.05224 1.45% Castro::reset_internal_energy(Fab) 1008 0.04745 0.04949 0.05196 1.44% Castro::normalize_species() 62 0.04073 0.04233 0.04641 1.29% FabArray::ParallelCopy_nowait() 41 0.03567 0.04099 0.0423 1.17% StateDataPhysBCFunct::() 41 0.03363 0.0367 0.04031 1.12% StateData::FillBoundary(geom) 41 0.03355 0.03661 0.04021 1.11% Castro::construct_new_source() 50 0.02827 0.0316 0.03619 1.00% Castro::finalize_do_advance() 10 0.01247 0.0242 0.03247 0.90% Castro::construct_new_gravity_source() 10 0.02214 0.02535 0.02963 0.82% Castro::post_init() 1 0.02903 0.02926 0.02956 0.82% Gravity::interpolate_monopole_grav() 21 0.02805 0.02841 0.02882 0.80% Amr::writePlotFile() 2 0.02694 0.02723 0.02752 0.76% VisMF::Write(FabArray) 2 0.01368 0.01466 0.01754 0.49% Castro::post_timestep() 10 0.01555 0.01589 0.01646 0.46% Castro::Castro() 1 0.01107 0.01227 0.01504 0.42% Castro::apply_source_to_state() 20 0.01072 0.01283 0.0135 0.37% FabArray::Saxpy() 20 0.01068 0.01278 0.01346 0.37% FabArray::setDomainBndry() 41 0.00902 0.01106 0.01238 0.34% Castro::check_for_nan() 20 0.0102 0.011 0.01223 0.34% MultiFab::contains_nan() 20 0.01018 0.01098 0.01221 0.34% Castro::initMFs() 1 0.00715 0.008254 0.01073 0.30% Castro::construct_old_source() 50 0.006965 0.00961 0.01034 0.29% Castro::construct_old_gravity_source() 10 0.006913 0.009544 0.01026 0.28% Castro::computeNewDt() 9 0.009003 0.009019 0.009029 0.25% AmrLevel::AmrLevel(dm) 1 0.005932 0.006706 0.008595 0.24% StateData::define() 4 0.005913 0.00668 0.00856 0.24% Castro::enforce_min_density() 62 0.006401 0.006613 0.006937 0.19% Castro::swap_state_time_levels() 10 0.003373 0.004671 0.005434 0.15% Castro::finalize_advance() 10 0.002956 0.003814 0.004767 0.13% Castro::buildMetrics() 1 0.001791 0.002067 0.002693 0.07% Castro::post_regrid() 1 0.001584 0.001673 0.001959 0.05% Amr::InitAmr() 1 0.0002815 0.0003591 0.0005014 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.223e-05 0.0001862 0.0002611 0.01% DistributionMapping::LeastUsedCPUs() 1 6.229e-06 0.0001793 0.0002528 0.01% Castro::enforce_consistent_e() 1 7.939e-05 9.024e-05 0.0001038 0.00% FabArrayBase::getCPC() 41 7.188e-05 7.595e-05 8.467e-05 0.00% Amr::writeSmallPlotFile() 1 2.63e-05 5.59e-05 7.174e-05 0.00% Castro::enforce_speed_limit() 62 2.684e-05 3.125e-05 3.473e-05 0.00% FabArrayBase::CPC::define() 2 2.227e-05 2.719e-05 3.403e-05 0.00% Amr::initSubcycle() 1 8.495e-06 1.083e-05 1.664e-05 0.00% Gravity::swapTimeLevels() 10 9.815e-06 1.262e-05 1.458e-05 0.00% Gravity::set_mass_offset() 10 8.584e-06 1.035e-05 1.365e-05 0.00% Castro::create_source_corrector() 10 6.852e-06 8.309e-06 1.101e-05 0.00% Castro::retry_advance_ctu() 10 6.38e-06 7.2e-06 8.79e-06 0.00% Castro::FluxRegCrseInit 10 5.254e-06 7.066e-06 8.666e-06 0.00% Castro::FluxRegFineAdd() 10 1.964e-06 2.152e-06 2.522e-06 0.00% DistributionMapping::Distribute() 1 8.92e-07 1.178e-06 1.467e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-19-ge7d3d5a4fad6) finalized