MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-22-g346a4d1c915f) initialized Starting run at 05:37:52 UTC on 2023-08-08. Successfully read inputs file ... Castro git describe: 23.08 AMReX git describe: 23.08-22-g346a4d1c9 Microphysics git describe: 23.08-3-g3d2714f8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016324059 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366058682 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362641887 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332916398 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333051784 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360168677 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.348705606 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312031067 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31139408 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311629677 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311708931 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.053530884 seconds Ending run at 05:37:56 UTC on 2023-08-08. Run time = 3.603636987 Run time without initialization = 3.411463547 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.602 ... 3.603 ... 3.604 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3216 2.3525 2.4165 67.06% Gravity::make_radial_gravity() 21 0.3177 0.3276 0.3364 9.33% Castro::estTimeStep() 21 0.0224 0.0788 0.1272 3.53% Castro::initData() 1 0.03902 0.07829 0.1194 3.31% check_for_negative_density() 10 0.01519 0.08458 0.1168 3.24% FabArray::setVal() 143 0.06538 0.076 0.08924 2.48% amrex::Copy() 193 0.06684 0.07806 0.08732 2.42% FabArray::ParallelCopy_finish() 41 0.03555 0.05815 0.08157 2.26% Amr::writePlotFile() 2 0.04967 0.05249 0.05315 1.47% Castro::reset_internal_energy(Fab) 1008 0.0464 0.04803 0.05016 1.39% FabArray::ParallelCopy_nowait() 41 0.03616 0.04125 0.04318 1.20% Castro::normalize_species() 62 0.04031 0.04166 0.04302 1.19% StateData::FillBoundary(geom) 41 0.03333 0.03612 0.04051 1.12% FillPatchIterator::Initialize 41 0.03008 0.03394 0.03808 1.06% Castro::construct_new_gravity_source() 10 0.02213 0.02563 0.03091 0.86% Gravity::interpolate_monopole_grav() 21 0.02774 0.02839 0.03055 0.85% Castro::initialize_do_advance() 10 0.0128 0.01835 0.02244 0.62% Castro::computeTemp() 63 0.01771 0.01952 0.02048 0.57% VisMF::Write(FabArray) 2 0.01413 0.01472 0.01756 0.49% Castro::initialize_advance() 10 0.009011 0.0118 0.01545 0.43% FabArray::Saxpy() 20 0.01064 0.01308 0.01477 0.41% FabArray::setDomainBndry() 41 0.009215 0.01118 0.01268 0.35% MultiFab::contains_nan() 20 0.009776 0.01073 0.01163 0.32% Castro::construct_old_gravity_source() 10 0.006965 0.009513 0.01015 0.28% Castro::initMFs() 1 0.007144 0.007406 0.009139 0.25% main() 1 0.005034 0.005981 0.006905 0.19% StateData::define() 4 0.005909 0.00604 0.006798 0.19% Castro::enforce_min_density() 62 0.006349 0.006545 0.006763 0.19% Castro::construct_new_source() 50 0.005751 0.006204 0.006399 0.18% Gravity::get_new_grav_vector() 11 0.003005 0.00387 0.005976 0.17% Castro::swap_state_time_levels() 10 0.003422 0.004571 0.004817 0.13% Amr::coarseTimeStep() 10 0.0008928 0.002576 0.003892 0.11% Gravity::get_old_grav_vector() 10 0.001626 0.001938 0.002183 0.06% Castro::buildMetrics() 1 0.001697 0.001733 0.001942 0.05% Castro::finalize_do_advance() 10 0.0006774 0.001504 0.001876 0.05% AmrLevel::FillPatch() 41 0.0009491 0.001166 0.001441 0.04% Amr::InitAmr() 1 0.0002784 0.0003146 0.0004657 0.01% Amr::timeStep() 10 0.0001886 0.0002474 0.0004637 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002729 0.0002954 0.0003288 0.01% Castro::do_advance_ctu() 10 0.000151 0.0001943 0.0002664 0.01% DistributionMapping::LeastUsedCPUs() 1 1.064e-05 0.0001641 0.0001985 0.01% Castro::clean_state() 62 0.000137 0.000153 0.0001749 0.00% FillPatchIterator::FillFromLevel0() 41 8.585e-05 0.0001052 0.0001276 0.00% Castro::finalize_advance() 10 8.712e-05 0.0001026 0.0001134 0.00% Castro::do_old_sources() 10 7.79e-05 9.265e-05 0.0001046 0.00% Castro::enforce_consistent_e() 1 8.349e-05 8.978e-05 0.0001041 0.00% StateDataPhysBCFunct::() 41 8.604e-05 9.229e-05 0.000101 0.00% Castro::Castro() 1 5.819e-05 7.212e-05 9.579e-05 0.00% Amr::writeSmallPlotFile() 1 3.747e-05 6.936e-05 8.644e-05 0.00% Castro::construct_old_source() 50 5.669e-05 6.948e-05 8.279e-05 0.00% FabArray::ParallelCopy() 41 6.036e-05 6.9e-05 7.753e-05 0.00% FillPatchSingleLevel 41 5.873e-05 6.563e-05 7.344e-05 0.00% FabArrayBase::getCPC() 41 4.745e-05 5.364e-05 7.221e-05 0.00% Amr::FinalizeInit() 1 4.159e-06 1.275e-05 6.913e-05 0.00% Castro::do_new_sources() 10 5.405e-05 6.313e-05 6.842e-05 0.00% Castro::apply_source_to_state() 20 3.324e-05 4.927e-05 6.638e-05 0.00% Castro::subcycle_advance_ctu() 10 3.994e-05 5.304e-05 6.392e-05 0.00% Castro::construct_old_gravity() 10 3.997e-05 4.751e-05 5.569e-05 0.00% Castro::advance() 10 4.054e-05 4.697e-05 5.316e-05 0.00% Castro::construct_new_gravity() 10 3.295e-05 3.861e-05 5.302e-05 0.00% Castro::enforce_speed_limit() 62 2.904e-05 3.151e-05 3.29e-05 0.00% Castro::expand_state() 10 2.047e-05 2.534e-05 3.023e-05 0.00% Amr::defBaseLevel() 1 2.276e-05 2.599e-05 2.871e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.476e-05 2.828e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.392e-05 1.704e-05 2.409e-05 0.00% Castro::check_for_nan() 20 1.912e-05 2.061e-05 2.312e-05 0.00% Castro::post_timestep() 10 1.208e-05 1.518e-05 2.047e-05 0.00% Gravity::swapTimeLevels() 10 1.132e-05 1.334e-05 1.526e-05 0.00% Castro::computeNewDt() 9 1.059e-05 1.239e-05 1.409e-05 0.00% Gravity::set_mass_offset() 10 8.913e-06 1.082e-05 1.325e-05 0.00% Amr::initSubcycle() 1 8.57e-06 8.952e-06 1.02e-05 0.00% Castro::retry_advance_ctu() 10 6.289e-06 7.158e-06 9.698e-06 0.00% Castro::create_source_corrector() 10 7.567e-06 8.21e-06 9.076e-06 0.00% Castro::FluxRegCrseInit 10 6.683e-06 7.473e-06 8.783e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.774e-06 5.135e-06 7.522e-06 0.00% Castro::computeInitialDt() 2 3.85e-06 4.706e-06 5.321e-06 0.00% Castro::post_init() 1 2.901e-06 3.721e-06 5.123e-06 0.00% Amr::InitializeInit() 1 1.951e-06 2.53e-06 4.583e-06 0.00% Castro::post_regrid() 1 1.815e-06 2.788e-06 3.607e-06 0.00% Amr::init() 1 1.667e-06 2.288e-06 2.877e-06 0.00% Castro::FluxRegFineAdd() 10 1.873e-06 2.133e-06 2.651e-06 0.00% Amr::initialInit() 1 1.37e-06 1.67e-06 1.858e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.211e-06 1.771e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.602 3.603 3.604 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 92.99% Amr::timeStep() 10 3.337 3.338 3.34 92.68% Castro::advance() 10 3.321 3.322 3.323 92.22% Castro::subcycle_advance_ctu() 10 3.23 3.24 3.248 90.14% Castro::do_advance_ctu() 10 3.23 3.24 3.248 90.14% Castro::construct_ctu_hydro_source() 10 2.453 2.458 2.46 68.28% Gravity::make_radial_gravity() 21 0.334 0.3447 0.3507 9.73% Gravity::get_new_grav_vector() 11 0.2319 0.2335 0.2343 6.50% AmrLevel::FillPatch() 41 0.184 0.2112 0.2282 6.33% Castro::construct_new_gravity() 10 0.2034 0.2046 0.2052 5.70% Castro::construct_old_gravity() 10 0.1901 0.1978 0.2022 5.61% Gravity::get_old_grav_vector() 10 0.1891 0.197 0.2016 5.59% FillPatchIterator::Initialize 41 0.1554 0.181 0.1959 5.44% Amr::init() 1 0.1916 0.1917 0.1918 5.32% Castro::initialize_do_advance() 10 0.1622 0.1771 0.1873 5.20% Amr::initialInit() 1 0.1751 0.1753 0.1756 4.87% FillPatchIterator::FillFromLevel0() 41 0.1151 0.1359 0.1554 4.31% FillPatchSingleLevel 41 0.115 0.1358 0.1553 4.31% Amr::InitializeInit() 1 0.06115 0.1006 0.1428 3.96% Amr::defBaseLevel() 1 0.06114 0.1006 0.1428 3.96% Castro::expand_state() 10 0.104 0.122 0.1333 3.70% Castro::estTimeStep() 21 0.0224 0.0788 0.1272 3.53% Castro::initData() 1 0.04313 0.08243 0.123 3.41% Castro::clean_state() 62 0.1111 0.1153 0.1197 3.32% FabArray::ParallelCopy() 41 0.07851 0.09954 0.1179 3.27% check_for_negative_density() 10 0.01519 0.08458 0.1168 3.24% Amr::FinalizeInit() 1 0.03249 0.07467 0.1144 3.17% Castro::do_old_sources() 10 0.08806 0.09267 0.09659 2.68% FabArray::setVal() 143 0.06538 0.076 0.08924 2.48% Castro::initialize_advance() 10 0.07008 0.07788 0.08899 2.47% amrex::Copy() 193 0.06684 0.07806 0.08732 2.42% Castro::computeInitialDt() 2 0.002348 0.04451 0.08401 2.33% FabArray::ParallelCopy_finish() 41 0.03555 0.05815 0.08157 2.26% Castro::do_new_sources() 10 0.05889 0.06768 0.08154 2.26% Castro::computeTemp() 63 0.0644 0.06785 0.07093 1.97% Amr::writePlotFile() 2 0.06974 0.07003 0.07024 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04669 0.04833 0.05045 1.40% Castro::reset_internal_energy(Fab) 1008 0.0464 0.04803 0.05016 1.39% FabArray::ParallelCopy_nowait() 41 0.03625 0.04133 0.04326 1.20% Castro::normalize_species() 62 0.04031 0.04166 0.04302 1.19% StateDataPhysBCFunct::() 41 0.03342 0.03621 0.0406 1.13% StateData::FillBoundary(geom) 41 0.03333 0.03612 0.04051 1.12% Castro::construct_new_source() 50 0.02834 0.03183 0.0373 1.04% Castro::finalize_do_advance() 10 0.01282 0.02673 0.03621 1.00% Castro::construct_new_gravity_source() 10 0.02213 0.02563 0.03091 0.86% Gravity::interpolate_monopole_grav() 21 0.02774 0.02839 0.03055 0.85% Castro::post_init() 1 0.02966 0.02982 0.03016 0.84% VisMF::Write(FabArray) 2 0.01413 0.01472 0.01756 0.49% Castro::post_timestep() 10 0.01504 0.01571 0.01644 0.46% Castro::apply_source_to_state() 20 0.0107 0.01313 0.01482 0.41% FabArray::Saxpy() 20 0.01064 0.01308 0.01477 0.41% Castro::Castro() 1 0.01183 0.01196 0.01274 0.35% FabArray::setDomainBndry() 41 0.009215 0.01118 0.01268 0.35% Castro::check_for_nan() 20 0.009796 0.01075 0.01165 0.32% MultiFab::contains_nan() 20 0.009776 0.01073 0.01163 0.32% Castro::construct_old_source() 50 0.007028 0.009583 0.01023 0.28% Castro::construct_old_gravity_source() 10 0.006965 0.009513 0.01015 0.28% Castro::initMFs() 1 0.007144 0.007406 0.009139 0.25% Castro::computeNewDt() 9 0.009051 0.009078 0.009094 0.25% AmrLevel::AmrLevel(dm) 1 0.005924 0.006057 0.006817 0.19% StateData::define() 4 0.005909 0.00604 0.006798 0.19% Castro::enforce_min_density() 62 0.006349 0.006545 0.006763 0.19% Castro::swap_state_time_levels() 10 0.003422 0.004571 0.004817 0.13% Castro::finalize_advance() 10 0.002967 0.003798 0.004659 0.13% Castro::buildMetrics() 1 0.00183 0.001872 0.002105 0.06% Castro::post_regrid() 1 0.001561 0.001607 0.001656 0.05% Amr::InitAmr() 1 0.0002876 0.0003236 0.0004744 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.812e-05 0.0001705 0.0002059 0.01% DistributionMapping::LeastUsedCPUs() 1 1.064e-05 0.0001641 0.0001985 0.01% Castro::enforce_consistent_e() 1 8.349e-05 8.978e-05 0.0001041 0.00% FabArrayBase::getCPC() 41 6.975e-05 7.84e-05 9.482e-05 0.00% Amr::writeSmallPlotFile() 1 3.747e-05 6.936e-05 8.644e-05 0.00% Castro::enforce_speed_limit() 62 2.904e-05 3.151e-05 3.29e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.476e-05 2.828e-05 0.00% Gravity::swapTimeLevels() 10 1.132e-05 1.334e-05 1.526e-05 0.00% Gravity::set_mass_offset() 10 8.913e-06 1.082e-05 1.325e-05 0.00% Amr::initSubcycle() 1 8.57e-06 8.952e-06 1.02e-05 0.00% Castro::retry_advance_ctu() 10 6.289e-06 7.158e-06 9.698e-06 0.00% Castro::create_source_corrector() 10 7.567e-06 8.21e-06 9.076e-06 0.00% Castro::FluxRegCrseInit 10 6.683e-06 7.473e-06 8.783e-06 0.00% Castro::FluxRegFineAdd() 10 1.873e-06 2.133e-06 2.651e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.211e-06 1.771e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-22-g346a4d1c915f) finalized