MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-23-gd92232a0c17b) initialized Starting run at 05:36:18 UTC on 2023-08-09. Successfully read inputs file ... Castro git describe: 23.08 AMReX git describe: 23.08-23-gd92232a0c Microphysics git describe: 23.08-3-g3d2714f8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01688479 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364848294 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360110597 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333198979 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330304889 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.349490604 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.362467462 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312517774 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317631469 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313352378 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313113676 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010577433 seconds Ending run at 05:36:22 UTC on 2023-08-09. Run time = 3.558402044 Run time without initialization = 3.375044328 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.558 ... 3.558 ... 3.558 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3219 2.3559 2.4036 67.55% Gravity::make_radial_gravity() 21 0.3182 0.3268 0.3395 9.54% Castro::initData() 1 0.03868 0.07766 0.113 3.18% Castro::estTimeStep() 21 0.02455 0.07778 0.1118 3.14% check_for_negative_density() 10 0.02138 0.07383 0.1066 2.99% FabArray::ParallelCopy_finish() 41 0.03934 0.06539 0.1009 2.84% amrex::Copy() 193 0.06702 0.07717 0.08757 2.46% FabArray::setVal() 143 0.06236 0.07275 0.08696 2.44% Castro::reset_internal_energy(Fab) 1008 0.04768 0.04909 0.05133 1.44% Castro::normalize_species() 62 0.04132 0.04216 0.04439 1.25% FabArray::ParallelCopy_nowait() 41 0.03529 0.04075 0.04267 1.20% FillPatchIterator::Initialize 41 0.02801 0.03364 0.04081 1.15% StateData::FillBoundary(geom) 41 0.03411 0.03657 0.04072 1.14% Castro::construct_new_gravity_source() 10 0.02143 0.02501 0.03638 1.02% Gravity::interpolate_monopole_grav() 21 0.02798 0.02842 0.02893 0.81% Castro::initialize_do_advance() 10 0.01199 0.01868 0.02297 0.65% Castro::computeTemp() 63 0.01912 0.01981 0.02034 0.57% VisMF::Write(FabArray) 2 0.01369 0.01445 0.01773 0.50% Castro::initialize_advance() 10 0.004083 0.01044 0.01456 0.41% FabArray::Saxpy() 20 0.01067 0.01259 0.01373 0.39% Amr::writePlotFile() 2 0.007563 0.011 0.01279 0.36% FabArray::setDomainBndry() 41 0.008776 0.01097 0.01252 0.35% MultiFab::contains_nan() 20 0.009558 0.01064 0.0115 0.32% Castro::construct_old_gravity_source() 10 0.006748 0.009389 0.01005 0.28% Castro::initMFs() 1 0.007089 0.007449 0.009251 0.26% Amr::coarseTimeStep() 10 0.001914 0.006429 0.008032 0.23% Castro::construct_new_source() 50 0.005837 0.006487 0.007761 0.22% Castro::enforce_min_density() 62 0.006446 0.006895 0.007426 0.21% StateData::define() 4 0.005939 0.006169 0.006752 0.19% main() 1 0.005778 0.006313 0.006642 0.19% Castro::swap_state_time_levels() 10 0.003564 0.004577 0.005 0.14% Gravity::get_new_grav_vector() 11 0.002918 0.003569 0.004013 0.11% Gravity::get_old_grav_vector() 10 0.001589 0.001942 0.002332 0.07% Castro::finalize_do_advance() 10 0.0006779 0.00174 0.002141 0.06% Castro::buildMetrics() 1 0.001671 0.001731 0.00193 0.05% AmrLevel::FillPatch() 41 0.0008062 0.001121 0.001346 0.04% Amr::timeStep() 10 0.000171 0.0002453 0.000507 0.01% Amr::InitAmr() 1 0.0002755 0.0003082 0.0004678 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002817 0.0002976 0.0003235 0.01% Castro::do_advance_ctu() 10 0.0001288 0.0001725 0.0002286 0.01% Castro::enforce_consistent_e() 1 7.35e-05 0.0001025 0.0002191 0.01% DistributionMapping::LeastUsedCPUs() 1 8.318e-06 0.0001683 0.0001951 0.01% Castro::clean_state() 62 0.0001463 0.0001567 0.0001716 0.00% Castro::finalize_advance() 10 8.972e-05 0.0001121 0.0001529 0.00% Castro::do_old_sources() 10 7.462e-05 9.53e-05 0.000121 0.00% FillPatchIterator::FillFromLevel0() 41 8.955e-05 0.0001039 0.0001136 0.00% StateDataPhysBCFunct::() 41 7.731e-05 9.539e-05 0.0001045 0.00% Castro::Castro() 1 5.474e-05 8.122e-05 9.87e-05 0.00% Castro::construct_old_source() 50 4.585e-05 6.865e-05 9.143e-05 0.00% FabArray::ParallelCopy() 41 6.229e-05 7.142e-05 8.969e-05 0.00% FillPatchSingleLevel 41 6.582e-05 7.266e-05 8.073e-05 0.00% Amr::FinalizeInit() 1 3.417e-06 1.416e-05 8.069e-05 0.00% Castro::subcycle_advance_ctu() 10 3.93e-05 5.689e-05 7.099e-05 0.00% Castro::do_new_sources() 10 5.087e-05 6.423e-05 7.069e-05 0.00% Amr::writeSmallPlotFile() 1 3.045e-05 5.154e-05 7.02e-05 0.00% Castro::apply_source_to_state() 20 3.876e-05 5.08e-05 6.134e-05 0.00% Castro::construct_old_gravity() 10 3.89e-05 4.835e-05 6.07e-05 0.00% Castro::retry_advance_ctu() 10 7.299e-06 2.566e-05 5.96e-05 0.00% FabArrayBase::getCPC() 41 4.289e-05 5.22e-05 5.814e-05 0.00% Castro::advance() 10 3.896e-05 4.726e-05 5.424e-05 0.00% Castro::construct_new_gravity() 10 3.362e-05 4.249e-05 5.387e-05 0.00% Amr::defBaseLevel() 1 2.53e-05 3.065e-05 3.605e-05 0.00% Castro::enforce_speed_limit() 62 2.577e-05 3.127e-05 3.442e-05 0.00% FabArrayBase::CPC::define() 2 2.056e-05 2.577e-05 3.382e-05 0.00% Castro::expand_state() 10 1.964e-05 2.32e-05 2.809e-05 0.00% Castro::FluxRegCrseInit 10 6.433e-06 1.067e-05 2.331e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.528e-05 2.047e-05 2.279e-05 0.00% Castro::check_for_nan() 20 1.842e-05 2.088e-05 2.24e-05 0.00% Castro::post_timestep() 10 1.231e-05 1.526e-05 1.765e-05 0.00% Gravity::set_mass_offset() 10 7.22e-06 1.227e-05 1.725e-05 0.00% Gravity::swapTimeLevels() 10 1.244e-05 1.438e-05 1.617e-05 0.00% Castro::computeNewDt() 9 9.261e-06 1.091e-05 1.221e-05 0.00% Amr::initSubcycle() 1 8.608e-06 9.528e-06 1.064e-05 0.00% Castro::create_source_corrector() 10 8.013e-06 8.48e-06 8.932e-06 0.00% Castro::post_regrid() 1 1.799e-06 3.564e-06 7.466e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.015e-06 5.361e-06 6.125e-06 0.00% Amr::InitializeInit() 1 1.886e-06 2.491e-06 5.473e-06 0.00% Castro::computeInitialDt() 2 3.577e-06 4.362e-06 5.197e-06 0.00% Castro::post_init() 1 3.012e-06 3.723e-06 4.363e-06 0.00% Amr::init() 1 2.023e-06 2.301e-06 2.741e-06 0.00% Amr::initialInit() 1 1.347e-06 1.85e-06 2.553e-06 0.00% Castro::FluxRegFineAdd() 10 1.856e-06 2.137e-06 2.381e-06 0.00% DistributionMapping::Distribute() 1 9.57e-07 1.256e-06 1.494e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.558 3.558 3.558 100.00% Amr::coarseTimeStep() 10 3.358 3.358 3.358 94.36% Amr::timeStep() 10 3.339 3.341 3.345 94.01% Castro::advance() 10 3.323 3.324 3.326 93.47% Castro::subcycle_advance_ctu() 10 3.234 3.246 3.255 91.47% Castro::do_advance_ctu() 10 3.234 3.246 3.255 91.47% Castro::construct_ctu_hydro_source() 10 2.446 2.45 2.454 68.96% Gravity::make_radial_gravity() 21 0.3334 0.3427 0.3524 9.90% AmrLevel::FillPatch() 41 0.1859 0.2176 0.2403 6.75% Gravity::get_new_grav_vector() 11 0.2238 0.225 0.2263 6.36% Castro::construct_old_gravity() 10 0.1932 0.2021 0.2104 5.91% Gravity::get_old_grav_vector() 10 0.1926 0.2013 0.2098 5.90% FillPatchIterator::Initialize 41 0.1567 0.1877 0.2088 5.87% Castro::construct_new_gravity() 10 0.1975 0.1982 0.1991 5.59% Castro::initialize_do_advance() 10 0.1675 0.1835 0.1975 5.55% Amr::init() 1 0.1827 0.1829 0.1829 5.14% FillPatchIterator::FillFromLevel0() 41 0.1173 0.1431 0.1714 4.82% FillPatchSingleLevel 41 0.1172 0.143 0.1713 4.81% Amr::initialInit() 1 0.1653 0.1656 0.1658 4.66% Castro::expand_state() 10 0.1073 0.128 0.1432 4.02% FabArray::ParallelCopy() 41 0.08045 0.1063 0.1364 3.83% Amr::InitializeInit() 1 0.06041 0.09988 0.1351 3.80% Amr::defBaseLevel() 1 0.06041 0.09988 0.1351 3.80% Castro::clean_state() 62 0.1142 0.1175 0.1226 3.44% Castro::initData() 1 0.04264 0.08162 0.1171 3.29% Castro::estTimeStep() 21 0.02455 0.07778 0.1118 3.14% check_for_negative_density() 10 0.02138 0.07383 0.1066 2.99% Amr::FinalizeInit() 1 0.03058 0.06571 0.1051 2.95% Castro::do_old_sources() 10 0.09144 0.09672 0.1015 2.85% FabArray::ParallelCopy_finish() 41 0.03934 0.06539 0.1009 2.84% amrex::Copy() 193 0.06702 0.07717 0.08757 2.46% FabArray::setVal() 143 0.06236 0.07275 0.08696 2.44% Castro::initialize_advance() 10 0.064 0.07421 0.08574 2.41% Castro::do_new_sources() 10 0.06005 0.06592 0.0828 2.33% Castro::computeInitialDt() 2 0.002308 0.03755 0.07704 2.16% Castro::computeTemp() 63 0.0671 0.0692 0.07195 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04798 0.04939 0.05161 1.45% Castro::reset_internal_energy(Fab) 1008 0.04768 0.04909 0.05133 1.44% Castro::normalize_species() 62 0.04132 0.04216 0.04439 1.25% Castro::construct_new_source() 50 0.02727 0.03149 0.04414 1.24% FabArray::ParallelCopy_nowait() 41 0.03538 0.04083 0.04275 1.20% StateDataPhysBCFunct::() 41 0.03421 0.03667 0.04083 1.15% StateData::FillBoundary(geom) 41 0.03411 0.03657 0.04072 1.14% Castro::finalize_do_advance() 10 0.01497 0.03273 0.03941 1.11% Castro::construct_new_gravity_source() 10 0.02143 0.02501 0.03638 1.02% Gravity::interpolate_monopole_grav() 21 0.02798 0.02842 0.02893 0.81% Amr::writePlotFile() 2 0.02774 0.02799 0.0283 0.80% Castro::post_init() 1 0.02746 0.0278 0.02814 0.79% Castro::post_timestep() 10 0.01564 0.01638 0.01916 0.54% VisMF::Write(FabArray) 2 0.01369 0.01445 0.01773 0.50% Castro::apply_source_to_state() 20 0.01071 0.01264 0.01379 0.39% FabArray::Saxpy() 20 0.01067 0.01259 0.01373 0.39% Castro::Castro() 1 0.01142 0.01186 0.01281 0.36% FabArray::setDomainBndry() 41 0.008776 0.01097 0.01252 0.35% Castro::check_for_nan() 20 0.009578 0.01066 0.01153 0.32% MultiFab::contains_nan() 20 0.009558 0.01064 0.0115 0.32% Castro::construct_old_source() 50 0.006794 0.009458 0.01013 0.28% Castro::construct_old_gravity_source() 10 0.006748 0.009389 0.01005 0.28% Castro::computeNewDt() 9 0.009243 0.009263 0.009312 0.26% Castro::initMFs() 1 0.007089 0.007449 0.009251 0.26% Castro::enforce_min_density() 62 0.006446 0.006895 0.007426 0.21% AmrLevel::AmrLevel(dm) 1 0.005961 0.006189 0.006775 0.19% StateData::define() 4 0.005939 0.006169 0.006752 0.19% Castro::finalize_advance() 10 0.002887 0.004242 0.005916 0.17% Castro::swap_state_time_levels() 10 0.003564 0.004577 0.005 0.14% Castro::buildMetrics() 1 0.001795 0.001862 0.002097 0.06% Castro::post_regrid() 1 0.001529 0.001636 0.001865 0.05% Amr::InitAmr() 1 0.0002845 0.0003177 0.0004783 0.01% Castro::enforce_consistent_e() 1 7.35e-05 0.0001025 0.0002191 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.336e-05 0.0001749 0.0002025 0.01% DistributionMapping::LeastUsedCPUs() 1 8.318e-06 0.0001683 0.0001951 0.01% FabArrayBase::getCPC() 41 6.467e-05 7.797e-05 9.025e-05 0.00% Amr::writeSmallPlotFile() 1 3.045e-05 5.154e-05 7.02e-05 0.00% Castro::retry_advance_ctu() 10 7.299e-06 2.566e-05 5.96e-05 0.00% Castro::enforce_speed_limit() 62 2.577e-05 3.127e-05 3.442e-05 0.00% FabArrayBase::CPC::define() 2 2.056e-05 2.577e-05 3.382e-05 0.00% Castro::FluxRegCrseInit 10 6.433e-06 1.067e-05 2.331e-05 0.00% Gravity::set_mass_offset() 10 7.22e-06 1.227e-05 1.725e-05 0.00% Gravity::swapTimeLevels() 10 1.244e-05 1.438e-05 1.617e-05 0.00% Amr::initSubcycle() 1 8.608e-06 9.528e-06 1.064e-05 0.00% Castro::create_source_corrector() 10 8.013e-06 8.48e-06 8.932e-06 0.00% Castro::FluxRegFineAdd() 10 1.856e-06 2.137e-06 2.381e-06 0.00% DistributionMapping::Distribute() 1 9.57e-07 1.256e-06 1.494e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-23-gd92232a0c17b) finalized