MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-23-gd92232a0c17b) initialized Starting run at 05:22:02 UTC on 2023-08-10. Successfully read inputs file ... Castro git describe: 23.08-3-g76295aa13 AMReX git describe: 23.08-23-gd92232a0c Microphysics git describe: 23.08-3-g3d2714f8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016590801 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361064707 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35057128 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333077976 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334037969 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.345983929 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.367851469 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314559264 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315848055 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314902303 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316027093 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010494969 seconds Ending run at 05:22:05 UTC on 2023-08-10. Run time = 3.557872265 Run time without initialization = 3.371790691 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.556 ... 3.558 ... 3.558 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2524 2.3576 2.4186 67.98% Gravity::make_radial_gravity() 21 0.3162 0.325 0.3403 9.57% check_for_negative_density() 10 0.01318 0.07803 0.1877 5.27% Castro::initData() 1 0.04023 0.07783 0.1143 3.21% Castro::estTimeStep() 21 0.02766 0.06866 0.1107 3.11% FabArray::ParallelCopy_finish() 41 0.03458 0.06552 0.09323 2.62% FabArray::setVal() 143 0.06543 0.07518 0.09036 2.54% amrex::Copy() 193 0.06781 0.07876 0.08969 2.52% Castro::reset_internal_energy(Fab) 1008 0.04743 0.04904 0.05155 1.45% Castro::normalize_species() 62 0.04057 0.04204 0.0436 1.23% FabArray::ParallelCopy_nowait() 41 0.03444 0.04074 0.04308 1.21% FillPatchIterator::Initialize 41 0.02916 0.03394 0.04072 1.14% StateData::FillBoundary(geom) 41 0.03351 0.03653 0.03939 1.11% Gravity::interpolate_monopole_grav() 21 0.0282 0.02852 0.02884 0.81% Castro::construct_new_gravity_source() 10 0.02138 0.02394 0.02565 0.72% Castro::initialize_do_advance() 10 0.01256 0.01886 0.02456 0.69% Castro::computeTemp() 63 0.01901 0.01964 0.0207 0.58% VisMF::Write(FabArray) 2 0.0134 0.01442 0.01771 0.50% Castro::initialize_advance() 10 0.009096 0.01171 0.01529 0.43% FabArray::Saxpy() 20 0.01078 0.01272 0.01357 0.38% FabArray::setDomainBndry() 41 0.008801 0.01113 0.01247 0.35% MultiFab::contains_nan() 20 0.009576 0.01055 0.0117 0.33% Amr::writePlotFile() 2 0.007277 0.01042 0.01131 0.32% Castro::construct_old_gravity_source() 10 0.006633 0.009417 0.01006 0.28% Amr::coarseTimeStep() 10 0.001373 0.00659 0.009701 0.27% Castro::initMFs() 1 0.007041 0.007537 0.00891 0.25% Castro::enforce_min_density() 62 0.006514 0.006843 0.007269 0.20% StateData::define() 4 0.005864 0.006242 0.007166 0.20% Castro::construct_new_source() 50 0.005561 0.006395 0.006828 0.19% main() 1 0.005087 0.006199 0.00668 0.19% Castro::swap_state_time_levels() 10 0.002732 0.004561 0.00484 0.14% Gravity::get_new_grav_vector() 11 0.002935 0.003601 0.003859 0.11% Gravity::get_old_grav_vector() 10 0.001438 0.001899 0.002488 0.07% Castro::finalize_do_advance() 10 0.0006411 0.001668 0.002133 0.06% Castro::buildMetrics() 1 0.001641 0.001742 0.00195 0.05% AmrLevel::FillPatch() 41 0.00097 0.001251 0.001561 0.04% Amr::InitAmr() 1 0.0002873 0.0003112 0.0004098 0.01% Amr::timeStep() 10 0.0001686 0.0002286 0.0003879 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002895 0.0002977 0.0003133 0.01% Castro::do_advance_ctu() 10 0.0001191 0.0001595 0.0001945 0.01% Castro::clean_state() 62 0.0001352 0.0001456 0.0001588 0.00% Castro::finalize_advance() 10 7.958e-05 0.0001118 0.0001513 0.00% Castro::do_old_sources() 10 6.294e-05 8.995e-05 0.0001138 0.00% DistributionMapping::LeastUsedCPUs() 1 7.284e-06 9.949e-05 0.0001136 0.00% FillPatchIterator::FillFromLevel0() 41 8.839e-05 9.968e-05 0.0001099 0.00% StateDataPhysBCFunct::() 41 7.692e-05 9.238e-05 0.0001075 0.00% Castro::enforce_consistent_e() 1 7.432e-05 8.687e-05 0.0001019 0.00% Castro::Castro() 1 5.622e-05 7.007e-05 9.501e-05 0.00% Castro::construct_old_source() 50 4.055e-05 6.82e-05 9.135e-05 0.00% FillPatchSingleLevel 41 5.639e-05 6.859e-05 8.155e-05 0.00% Castro::do_new_sources() 10 4.747e-05 6.394e-05 7.973e-05 0.00% FabArray::ParallelCopy() 41 6.083e-05 6.971e-05 7.912e-05 0.00% Amr::FinalizeInit() 1 4.02e-06 1.406e-05 7.817e-05 0.00% Amr::writeSmallPlotFile() 1 2.651e-05 5.077e-05 6.751e-05 0.00% Castro::advance() 10 3.477e-05 4.663e-05 6.191e-05 0.00% FabArrayBase::getCPC() 41 4.424e-05 5.285e-05 6.043e-05 0.00% Castro::subcycle_advance_ctu() 10 3.634e-05 5.045e-05 5.988e-05 0.00% Castro::retry_advance_ctu() 10 6.819e-06 2.917e-05 5.799e-05 0.00% Castro::construct_old_gravity() 10 3.625e-05 4.415e-05 5.598e-05 0.00% Amr::defBaseLevel() 1 2.5e-05 3.868e-05 5.096e-05 0.00% Castro::apply_source_to_state() 20 3.106e-05 4.214e-05 4.891e-05 0.00% Castro::construct_new_gravity() 10 3.466e-05 3.971e-05 4.693e-05 0.00% Castro::expand_state() 10 1.736e-05 2.227e-05 3.384e-05 0.00% Castro::enforce_speed_limit() 62 2.582e-05 2.955e-05 3.141e-05 0.00% FabArrayBase::CPC::define() 2 2.029e-05 2.416e-05 2.888e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.331e-05 1.865e-05 2.368e-05 0.00% Castro::check_for_nan() 20 1.91e-05 2.077e-05 2.281e-05 0.00% Gravity::set_mass_offset() 10 8.559e-06 1.222e-05 2.093e-05 0.00% Gravity::swapTimeLevels() 10 9.202e-06 1.344e-05 1.638e-05 0.00% Castro::post_timestep() 10 1.217e-05 1.417e-05 1.631e-05 0.00% Castro::FluxRegCrseInit 10 5.902e-06 8.655e-06 1.507e-05 0.00% Castro::computeNewDt() 9 9.585e-06 1.087e-05 1.235e-05 0.00% Amr::initSubcycle() 1 8.727e-06 9.839e-06 1.038e-05 0.00% Castro::create_source_corrector() 10 6.631e-06 8.543e-06 1.002e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.555e-06 5.454e-06 7.047e-06 0.00% Castro::computeInitialDt() 2 4.075e-06 4.468e-06 5.03e-06 0.00% Amr::InitializeInit() 1 2.022e-06 2.625e-06 4.987e-06 0.00% Castro::post_regrid() 1 1.901e-06 3.33e-06 4.729e-06 0.00% Castro::post_init() 1 2.716e-06 3.405e-06 4.661e-06 0.00% Amr::init() 1 1.836e-06 2.186e-06 2.481e-06 0.00% Castro::FluxRegFineAdd() 10 1.822e-06 2.068e-06 2.325e-06 0.00% Amr::initialInit() 1 1.249e-06 1.757e-06 2.134e-06 0.00% DistributionMapping::Distribute() 1 8.87e-07 1.158e-06 1.46e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.556 3.557 3.558 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 94.29% Amr::timeStep() 10 3.334 3.338 3.343 93.95% Castro::advance() 10 3.319 3.32 3.322 93.38% Castro::subcycle_advance_ctu() 10 3.228 3.238 3.245 91.22% Castro::do_advance_ctu() 10 3.228 3.238 3.245 91.21% Castro::construct_ctu_hydro_source() 10 2.453 2.456 2.461 69.16% Gravity::make_radial_gravity() 21 0.3319 0.3415 0.3549 9.98% AmrLevel::FillPatch() 41 0.1851 0.2183 0.238 6.69% Gravity::get_new_grav_vector() 11 0.2246 0.226 0.2265 6.37% Castro::construct_old_gravity() 10 0.1945 0.2004 0.2114 5.94% Gravity::get_old_grav_vector() 10 0.1933 0.1996 0.2109 5.93% FillPatchIterator::Initialize 41 0.1565 0.1883 0.2063 5.80% Castro::construct_new_gravity() 10 0.1969 0.1981 0.1991 5.60% Castro::initialize_do_advance() 10 0.1689 0.1845 0.1963 5.52% check_for_negative_density() 10 0.01318 0.07803 0.1877 5.27% Amr::init() 1 0.1855 0.1856 0.1857 5.22% Amr::initialInit() 1 0.168 0.1686 0.1689 4.75% FillPatchIterator::FillFromLevel0() 41 0.1162 0.1432 0.1618 4.55% FillPatchSingleLevel 41 0.1161 0.1431 0.1617 4.54% Castro::expand_state() 10 0.1085 0.1289 0.1418 3.98% Amr::InitializeInit() 1 0.06124 0.09958 0.137 3.85% Amr::defBaseLevel() 1 0.06124 0.09958 0.137 3.85% FabArray::ParallelCopy() 41 0.0766 0.1064 0.1278 3.59% Castro::clean_state() 62 0.1143 0.1171 0.1224 3.44% Castro::initData() 1 0.04416 0.08165 0.1178 3.31% Castro::estTimeStep() 21 0.02766 0.06866 0.1107 3.11% Amr::FinalizeInit() 1 0.03165 0.06897 0.1075 3.02% Castro::do_old_sources() 10 0.09301 0.09723 0.1015 2.85% FabArray::ParallelCopy_finish() 41 0.03458 0.06552 0.09323 2.62% FabArray::setVal() 143 0.06543 0.07518 0.09036 2.54% amrex::Copy() 193 0.06781 0.07876 0.08969 2.52% Castro::initialize_advance() 10 0.07067 0.07756 0.08802 2.47% Castro::computeInitialDt() 2 0.002354 0.03982 0.07805 2.19% Castro::computeTemp() 63 0.06697 0.06898 0.07237 2.03% Castro::do_new_sources() 10 0.06068 0.06405 0.06923 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04773 0.04934 0.05186 1.46% Castro::reset_internal_energy(Fab) 1008 0.04743 0.04904 0.05155 1.45% Castro::normalize_species() 62 0.04057 0.04204 0.0436 1.23% FabArray::ParallelCopy_nowait() 41 0.03452 0.04081 0.04315 1.21% StateDataPhysBCFunct::() 41 0.03361 0.03662 0.03948 1.11% StateData::FillBoundary(geom) 41 0.03351 0.03653 0.03939 1.11% Castro::construct_new_source() 50 0.02694 0.03034 0.03244 0.91% Castro::post_init() 1 0.02829 0.02883 0.02915 0.82% Gravity::interpolate_monopole_grav() 21 0.0282 0.02852 0.02884 0.81% Amr::writePlotFile() 2 0.02732 0.02766 0.0282 0.79% Castro::construct_new_gravity_source() 10 0.02138 0.02394 0.02565 0.72% Castro::finalize_do_advance() 10 0.01547 0.0214 0.02496 0.70% Castro::post_timestep() 10 0.01552 0.01719 0.02027 0.57% VisMF::Write(FabArray) 2 0.0134 0.01442 0.01771 0.50% Castro::apply_source_to_state() 20 0.01082 0.01276 0.01362 0.38% FabArray::Saxpy() 20 0.01078 0.01272 0.01357 0.38% FabArray::setDomainBndry() 41 0.008801 0.01113 0.01247 0.35% Castro::Castro() 1 0.01115 0.01153 0.01238 0.35% Castro::check_for_nan() 20 0.009597 0.01057 0.01172 0.33% MultiFab::contains_nan() 20 0.009576 0.01055 0.0117 0.33% Castro::construct_old_source() 50 0.006673 0.009485 0.01015 0.29% Castro::construct_old_gravity_source() 10 0.006633 0.009417 0.01006 0.28% Castro::computeNewDt() 9 0.009117 0.009132 0.009144 0.26% Castro::initMFs() 1 0.007041 0.007537 0.00891 0.25% Castro::enforce_min_density() 62 0.006514 0.006843 0.007269 0.20% AmrLevel::AmrLevel(dm) 1 0.005877 0.006261 0.007186 0.20% StateData::define() 4 0.005864 0.006242 0.007166 0.20% Castro::finalize_advance() 10 0.002892 0.004361 0.005981 0.17% Castro::swap_state_time_levels() 10 0.002732 0.004561 0.00484 0.14% Castro::buildMetrics() 1 0.001762 0.00187 0.002109 0.06% Castro::post_regrid() 1 0.001599 0.001649 0.001704 0.05% Amr::InitAmr() 1 0.0002973 0.000321 0.000419 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.173e-05 0.0001061 0.0001215 0.00% DistributionMapping::LeastUsedCPUs() 1 7.284e-06 9.949e-05 0.0001136 0.00% Castro::enforce_consistent_e() 1 7.432e-05 8.687e-05 0.0001019 0.00% FabArrayBase::getCPC() 41 7.193e-05 7.701e-05 8.3e-05 0.00% Amr::writeSmallPlotFile() 1 2.651e-05 5.077e-05 6.751e-05 0.00% Castro::retry_advance_ctu() 10 6.819e-06 2.917e-05 5.799e-05 0.00% Castro::enforce_speed_limit() 62 2.582e-05 2.955e-05 3.141e-05 0.00% FabArrayBase::CPC::define() 2 2.029e-05 2.416e-05 2.888e-05 0.00% Gravity::set_mass_offset() 10 8.559e-06 1.222e-05 2.093e-05 0.00% Gravity::swapTimeLevels() 10 9.202e-06 1.344e-05 1.638e-05 0.00% Castro::FluxRegCrseInit 10 5.902e-06 8.655e-06 1.507e-05 0.00% Amr::initSubcycle() 1 8.727e-06 9.839e-06 1.038e-05 0.00% Castro::create_source_corrector() 10 6.631e-06 8.543e-06 1.002e-05 0.00% Castro::FluxRegFineAdd() 10 1.822e-06 2.068e-06 2.325e-06 0.00% DistributionMapping::Distribute() 1 8.87e-07 1.158e-06 1.46e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-23-gd92232a0c17b) finalized