MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-24-g6535763b2178) initialized Starting run at 05:25:05 UTC on 2023-08-11. Successfully read inputs file ... Castro git describe: 23.08-3-g76295aa13 AMReX git describe: 23.08-24-g6535763b2 Microphysics git describe: 23.08-5-gb3d1571d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015670526 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361869051 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340311587 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337351108 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337051091 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333457751 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.372363943 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316046575 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315088457 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316914722 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314886166 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010289624 seconds Ending run at 05:25:09 UTC on 2023-08-11. Run time = 3.550047315 Run time without initialization = 3.363055051 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.549 ... 3.55 ... 3.55 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2948 2.3696 2.4119 67.94% Gravity::make_radial_gravity() 21 0.3163 0.3225 0.3362 9.47% check_for_negative_density() 10 0.02107 0.06467 0.1412 3.98% Castro::initData() 1 0.03896 0.08083 0.1153 3.25% Castro::estTimeStep() 21 0.02694 0.06698 0.1115 3.14% FabArray::ParallelCopy_finish() 41 0.03557 0.06841 0.09744 2.74% FabArray::setVal() 143 0.06407 0.07496 0.09128 2.57% amrex::Copy() 193 0.06533 0.07828 0.08731 2.46% Castro::reset_internal_energy(Fab) 1008 0.04784 0.04916 0.05136 1.45% Castro::normalize_species() 62 0.04071 0.04169 0.04265 1.20% FabArray::ParallelCopy_nowait() 41 0.03473 0.04049 0.04263 1.20% FillPatchIterator::Initialize 41 0.02849 0.03407 0.04154 1.17% StateData::FillBoundary(geom) 41 0.03276 0.0361 0.03821 1.08% Gravity::interpolate_monopole_grav() 21 0.02798 0.02856 0.02911 0.82% Castro::construct_new_gravity_source() 10 0.02137 0.02343 0.02547 0.72% Castro::initialize_do_advance() 10 0.01189 0.01829 0.02432 0.69% Castro::computeTemp() 63 0.01945 0.01983 0.02011 0.57% VisMF::Write(FabArray) 2 0.01358 0.01412 0.01663 0.47% Castro::initialize_advance() 10 0.008568 0.01144 0.01518 0.43% FabArray::Saxpy() 20 0.0106 0.01274 0.01352 0.38% FabArray::setDomainBndry() 41 0.00862 0.01102 0.01222 0.34% MultiFab::contains_nan() 20 0.009742 0.0103 0.01115 0.31% Amr::writePlotFile() 2 0.006791 0.009272 0.01006 0.28% Castro::construct_old_gravity_source() 10 0.006584 0.009183 0.009861 0.28% Castro::initMFs() 1 0.007076 0.007716 0.008234 0.23% Castro::enforce_min_density() 62 0.006502 0.006906 0.007642 0.22% main() 1 0.005318 0.006158 0.006786 0.19% Castro::construct_new_source() 50 0.00555 0.006397 0.006715 0.19% StateData::define() 4 0.005851 0.00634 0.006686 0.19% Castro::swap_state_time_levels() 10 0.003402 0.004463 0.00484 0.14% Amr::coarseTimeStep() 10 0.001022 0.002474 0.004198 0.12% Gravity::get_new_grav_vector() 11 0.003183 0.003671 0.004011 0.11% Gravity::get_old_grav_vector() 10 0.001489 0.00194 0.002241 0.06% Castro::finalize_do_advance() 10 0.0006908 0.001628 0.002006 0.06% Castro::buildMetrics() 1 0.001666 0.00183 0.001965 0.06% AmrLevel::FillPatch() 41 0.0009032 0.00112 0.001273 0.04% Amr::timeStep() 10 0.0001861 0.0003138 0.0009872 0.03% Amr::InitAmr() 1 0.000286 0.0003252 0.0004916 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002855 0.000305 0.00034 0.01% DistributionMapping::LeastUsedCPUs() 1 7.402e-06 0.000182 0.0002143 0.01% Castro::do_advance_ctu() 10 0.0001307 0.0001765 0.0002121 0.01% Castro::clean_state() 62 0.0001336 0.0001528 0.0001702 0.00% FillPatchIterator::FillFromLevel0() 41 8.367e-05 0.0001011 0.0001233 0.00% Castro::finalize_advance() 10 8.07e-05 9.931e-05 0.0001191 0.00% StateDataPhysBCFunct::() 41 8.703e-05 9.652e-05 0.0001086 0.00% Castro::do_old_sources() 10 7.536e-05 9.402e-05 0.000104 0.00% Castro::enforce_consistent_e() 1 8.174e-05 9.018e-05 9.89e-05 0.00% FabArray::ParallelCopy() 41 5.81e-05 7.048e-05 9.102e-05 0.00% Castro::construct_old_source() 50 4.904e-05 7.355e-05 9.022e-05 0.00% Amr::FinalizeInit() 1 3.506e-06 1.491e-05 8.741e-05 0.00% Castro::Castro() 1 5.854e-05 6.851e-05 8.084e-05 0.00% FillPatchSingleLevel 41 6.442e-05 7.1e-05 7.789e-05 0.00% Castro::do_new_sources() 10 5.387e-05 6.389e-05 7.105e-05 0.00% Castro::advance() 10 3.681e-05 4.971e-05 6.952e-05 0.00% Amr::writeSmallPlotFile() 1 2.644e-05 4.42e-05 6.431e-05 0.00% FabArrayBase::getCPC() 41 4.263e-05 5.455e-05 6.389e-05 0.00% Castro::subcycle_advance_ctu() 10 3.764e-05 5.149e-05 6.028e-05 0.00% Castro::apply_source_to_state() 20 3.542e-05 4.588e-05 5.478e-05 0.00% Castro::construct_old_gravity() 10 3.847e-05 4.588e-05 5.383e-05 0.00% Amr::defBaseLevel() 1 3.331e-05 4.415e-05 5.273e-05 0.00% Castro::computeNewDt() 9 9.692e-06 2.469e-05 4.857e-05 0.00% Castro::construct_new_gravity() 10 3.429e-05 3.987e-05 4.446e-05 0.00% FabArrayBase::CPC::define() 2 2.172e-05 2.653e-05 3.907e-05 0.00% Castro::enforce_speed_limit() 62 2.721e-05 3.085e-05 3.696e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.453e-05 2.226e-05 3.308e-05 0.00% Castro::expand_state() 10 1.995e-05 2.293e-05 2.691e-05 0.00% Castro::check_for_nan() 20 1.907e-05 2.105e-05 2.361e-05 0.00% Castro::post_timestep() 10 1.144e-05 1.573e-05 1.912e-05 0.00% Gravity::swapTimeLevels() 10 1.06e-05 1.381e-05 1.672e-05 0.00% Gravity::set_mass_offset() 10 1.001e-05 1.177e-05 1.472e-05 0.00% Castro::create_source_corrector() 10 7.224e-06 8.655e-06 1.109e-05 0.00% Amr::initSubcycle() 1 9.005e-06 1.001e-05 1.052e-05 0.00% Amr::init() 1 1.783e-06 2.845e-06 8.217e-06 0.00% Castro::retry_advance_ctu() 10 7.119e-06 7.381e-06 7.719e-06 0.00% Castro::FluxRegCrseInit 10 6.22e-06 6.902e-06 7.492e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.033e-06 4.68e-06 6.465e-06 0.00% Castro::computeInitialDt() 2 3.662e-06 4.486e-06 5.747e-06 0.00% Amr::InitializeInit() 1 1.959e-06 2.614e-06 5.241e-06 0.00% Castro::post_init() 1 2.604e-06 3.545e-06 4.784e-06 0.00% Castro::post_regrid() 1 1.815e-06 3.146e-06 4.641e-06 0.00% Castro::FluxRegFineAdd() 10 1.684e-06 2.106e-06 2.402e-06 0.00% Amr::initialInit() 1 1.367e-06 1.605e-06 1.928e-06 0.00% DistributionMapping::Distribute() 1 8.99e-07 1.104e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.549 3.549 3.55 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 94.25% Amr::timeStep() 10 3.328 3.329 3.329 93.78% Castro::advance() 10 3.312 3.312 3.313 93.32% Castro::subcycle_advance_ctu() 10 3.218 3.231 3.242 91.32% Castro::do_advance_ctu() 10 3.218 3.231 3.242 91.31% Castro::construct_ctu_hydro_source() 10 2.453 2.455 2.458 69.23% Gravity::make_radial_gravity() 21 0.3335 0.3392 0.3499 9.86% AmrLevel::FillPatch() 41 0.1909 0.221 0.2402 6.76% Gravity::get_new_grav_vector() 11 0.2236 0.2251 0.2269 6.39% Castro::construct_old_gravity() 10 0.196 0.1991 0.2082 5.87% FillPatchIterator::Initialize 41 0.1628 0.1905 0.208 5.86% Gravity::get_old_grav_vector() 10 0.195 0.1983 0.2076 5.85% Castro::initialize_do_advance() 10 0.1716 0.1861 0.1994 5.62% Castro::construct_new_gravity() 10 0.1948 0.1958 0.197 5.55% Amr::init() 1 0.1863 0.1865 0.1865 5.25% Amr::initialInit() 1 0.1705 0.1708 0.171 4.82% FillPatchIterator::FillFromLevel0() 41 0.1133 0.1454 0.1693 4.77% FillPatchSingleLevel 41 0.1132 0.1453 0.1691 4.76% Castro::expand_state() 10 0.1121 0.1312 0.1454 4.10% check_for_negative_density() 10 0.02107 0.06467 0.1412 3.98% Amr::InitializeInit() 1 0.05955 0.1031 0.1379 3.88% Amr::defBaseLevel() 1 0.05955 0.1031 0.1379 3.88% FabArray::ParallelCopy() 41 0.07648 0.1091 0.1323 3.73% Castro::clean_state() 62 0.1142 0.1171 0.1211 3.41% Castro::initData() 1 0.04278 0.08485 0.1193 3.36% Castro::estTimeStep() 21 0.02694 0.06698 0.1115 3.14% Amr::FinalizeInit() 1 0.03298 0.06764 0.1114 3.14% Castro::do_old_sources() 10 0.09201 0.09722 0.1 2.82% FabArray::ParallelCopy_finish() 41 0.03557 0.06841 0.09744 2.74% FabArray::setVal() 143 0.06407 0.07496 0.09128 2.57% Castro::initialize_advance() 10 0.06766 0.07833 0.091 2.56% amrex::Copy() 193 0.06533 0.07828 0.08731 2.46% Castro::computeInitialDt() 2 0.002451 0.03719 0.08082 2.28% Castro::computeTemp() 63 0.06794 0.06929 0.07166 2.02% Castro::do_new_sources() 10 0.06019 0.06374 0.06884 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04814 0.04947 0.05165 1.45% Castro::reset_internal_energy(Fab) 1008 0.04784 0.04916 0.05136 1.45% FabArray::ParallelCopy_nowait() 41 0.03482 0.04057 0.04271 1.20% Castro::normalize_species() 62 0.04071 0.04169 0.04265 1.20% StateDataPhysBCFunct::() 41 0.03287 0.0362 0.03831 1.08% StateData::FillBoundary(geom) 41 0.03276 0.0361 0.03821 1.08% Castro::construct_new_source() 50 0.02691 0.02982 0.03218 0.91% Castro::post_init() 1 0.02998 0.03021 0.03048 0.86% Gravity::interpolate_monopole_grav() 21 0.02798 0.02856 0.02911 0.82% Amr::writePlotFile() 2 0.02588 0.02608 0.02631 0.74% Castro::construct_new_gravity_source() 10 0.02137 0.02343 0.02547 0.72% Castro::finalize_do_advance() 10 0.01336 0.0178 0.02088 0.59% VisMF::Write(FabArray) 2 0.01358 0.01412 0.01663 0.47% Castro::post_timestep() 10 0.0155 0.01574 0.01593 0.45% Castro::computeNewDt() 9 0.01288 0.01365 0.01445 0.41% Castro::apply_source_to_state() 20 0.01064 0.01278 0.01357 0.38% FabArray::Saxpy() 20 0.0106 0.01274 0.01352 0.38% Castro::Castro() 1 0.01055 0.01169 0.01249 0.35% FabArray::setDomainBndry() 41 0.00862 0.01102 0.01222 0.34% Castro::check_for_nan() 20 0.009764 0.01033 0.01117 0.31% MultiFab::contains_nan() 20 0.009742 0.0103 0.01115 0.31% Castro::construct_old_source() 50 0.006633 0.009257 0.009952 0.28% Castro::construct_old_gravity_source() 10 0.006584 0.009183 0.009861 0.28% Castro::initMFs() 1 0.007076 0.007716 0.008234 0.23% Castro::enforce_min_density() 62 0.006502 0.006906 0.007642 0.22% AmrLevel::AmrLevel(dm) 1 0.005884 0.006362 0.0067 0.19% StateData::define() 4 0.005851 0.00634 0.006686 0.19% Castro::swap_state_time_levels() 10 0.003402 0.004463 0.00484 0.14% Castro::finalize_advance() 10 0.003072 0.003271 0.003516 0.10% Castro::buildMetrics() 1 0.001778 0.001955 0.0021 0.06% Castro::post_regrid() 1 0.00154 0.001655 0.001996 0.06% Amr::InitAmr() 1 0.0002953 0.0003352 0.0005021 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.248e-05 0.0001877 0.0002221 0.01% DistributionMapping::LeastUsedCPUs() 1 7.402e-06 0.000182 0.0002143 0.01% FabArrayBase::getCPC() 41 6.617e-05 8.108e-05 0.000103 0.00% Castro::enforce_consistent_e() 1 8.174e-05 9.018e-05 9.89e-05 0.00% Amr::writeSmallPlotFile() 1 2.644e-05 4.42e-05 6.431e-05 0.00% FabArrayBase::CPC::define() 2 2.172e-05 2.653e-05 3.907e-05 0.00% Castro::enforce_speed_limit() 62 2.721e-05 3.085e-05 3.696e-05 0.00% Gravity::swapTimeLevels() 10 1.06e-05 1.381e-05 1.672e-05 0.00% Gravity::set_mass_offset() 10 1.001e-05 1.177e-05 1.472e-05 0.00% Castro::create_source_corrector() 10 7.224e-06 8.655e-06 1.109e-05 0.00% Amr::initSubcycle() 1 9.005e-06 1.001e-05 1.052e-05 0.00% Castro::retry_advance_ctu() 10 7.119e-06 7.381e-06 7.719e-06 0.00% Castro::FluxRegCrseInit 10 6.22e-06 6.902e-06 7.492e-06 0.00% Castro::FluxRegFineAdd() 10 1.684e-06 2.106e-06 2.402e-06 0.00% DistributionMapping::Distribute() 1 8.99e-07 1.104e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-24-g6535763b2178) finalized