MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-29-g3291c074b67a) initialized Starting run at 05:35:32 UTC on 2023-08-14. Successfully read inputs file ... Castro git describe: 23.08-4-gba9dfc263 AMReX git describe: 23.08-29-g3291c074b Microphysics git describe: 23.08-7-g783d1a02 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018048619 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35970636 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.369237831 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336614149 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336297126 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371472189 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345860299 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314715107 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315290595 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314126599 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316204319 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010408439 seconds Ending run at 05:35:36 UTC on 2023-08-14. Run time = 3.597158525 Run time without initialization = 3.397421447 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.595 ... 3.597 ... 3.597 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3062 2.3784 2.4389 67.80% Gravity::make_radial_gravity() 21 0.3207 0.328 0.3451 9.59% check_for_negative_density() 10 0.01799 0.08196 0.1578 4.39% Castro::initData() 1 0.04063 0.08076 0.1289 3.58% Castro::estTimeStep() 21 0.04151 0.0842 0.1149 3.19% amrex::Copy() 193 0.06634 0.07914 0.09003 2.50% FabArray::setVal() 143 0.0644 0.07364 0.08744 2.43% FabArray::ParallelCopy_finish() 41 0.03917 0.0582 0.08175 2.27% Castro::reset_internal_energy(Fab) 1008 0.04764 0.0489 0.05028 1.40% Castro::normalize_species() 62 0.04088 0.0421 0.04394 1.22% FabArray::ParallelCopy_nowait() 41 0.03536 0.04186 0.04383 1.22% StateData::FillBoundary(geom) 41 0.03362 0.03682 0.03924 1.09% FillPatchIterator::Initialize 41 0.03025 0.0351 0.03705 1.03% Gravity::interpolate_monopole_grav() 21 0.02827 0.02875 0.02947 0.82% Castro::construct_new_gravity_source() 10 0.0223 0.02493 0.02944 0.82% Castro::initialize_do_advance() 10 0.01276 0.01868 0.02172 0.60% Castro::computeTemp() 63 0.01903 0.01971 0.02023 0.56% VisMF::Write(FabArray) 2 0.01391 0.0146 0.01731 0.48% Castro::initialize_advance() 10 0.009641 0.01216 0.0155 0.43% FabArray::Saxpy() 20 0.01076 0.0125 0.01338 0.37% FabArray::setDomainBndry() 41 0.008805 0.01166 0.01292 0.36% MultiFab::contains_nan() 20 0.009421 0.01049 0.01146 0.32% Amr::writePlotFile() 2 0.008498 0.01016 0.01114 0.31% Castro::construct_old_gravity_source() 10 0.007067 0.009522 0.01014 0.28% Castro::initMFs() 1 0.007358 0.007875 0.008722 0.24% Castro::enforce_min_density() 62 0.006574 0.00682 0.007354 0.20% StateData::define() 4 0.005965 0.006308 0.006853 0.19% main() 1 0.004846 0.006275 0.006797 0.19% Gravity::get_new_grav_vector() 11 0.00297 0.004273 0.006487 0.18% Castro::construct_new_source() 50 0.005814 0.0062 0.006438 0.18% Castro::swap_state_time_levels() 10 0.003424 0.004601 0.004856 0.14% Amr::coarseTimeStep() 10 0.001716 0.002817 0.003646 0.10% Gravity::get_old_grav_vector() 10 0.001452 0.002067 0.002501 0.07% Castro::buildMetrics() 1 0.001726 0.001823 0.001977 0.05% Castro::finalize_do_advance() 10 0.0007162 0.001563 0.001943 0.05% AmrLevel::FillPatch() 41 0.001011 0.001097 0.00121 0.03% Amr::InitAmr() 1 0.0002826 0.000319 0.0004721 0.01% Amr::timeStep() 10 0.0001826 0.0002293 0.0004134 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002823 0.0002957 0.0003068 0.01% Castro::clean_state() 62 0.00015 0.0001733 0.0002422 0.01% DistributionMapping::LeastUsedCPUs() 1 8.65e-06 0.0001747 0.0002063 0.01% Castro::do_advance_ctu() 10 0.0001371 0.0001567 0.0001762 0.00% Castro::finalize_advance() 10 8.374e-05 0.0001049 0.0001243 0.00% Castro::do_old_sources() 10 7.268e-05 8.887e-05 0.0001061 0.00% StateDataPhysBCFunct::() 41 7.859e-05 9.607e-05 0.0001055 0.00% FillPatchIterator::FillFromLevel0() 41 9.075e-05 0.0001009 0.0001054 0.00% Castro::enforce_consistent_e() 1 8.054e-05 8.607e-05 9.18e-05 0.00% FabArray::ParallelCopy() 41 5.699e-05 7.292e-05 8.687e-05 0.00% Amr::FinalizeInit() 1 3.689e-06 1.47e-05 8.612e-05 0.00% Castro::Castro() 1 5.91e-05 6.943e-05 7.726e-05 0.00% FillPatchSingleLevel 41 6.199e-05 7.066e-05 7.69e-05 0.00% Castro::construct_old_source() 50 5.178e-05 6.628e-05 7.449e-05 0.00% Castro::do_new_sources() 10 5.244e-05 6.079e-05 6.754e-05 0.00% Amr::writeSmallPlotFile() 1 2.805e-05 5.154e-05 6.733e-05 0.00% FabArrayBase::getCPC() 41 4.371e-05 5.662e-05 6.455e-05 0.00% Amr::defBaseLevel() 1 2.947e-05 4.255e-05 5.922e-05 0.00% Castro::subcycle_advance_ctu() 10 4.079e-05 4.888e-05 5.9e-05 0.00% Castro::construct_old_gravity() 10 3.851e-05 4.453e-05 5.471e-05 0.00% Castro::apply_source_to_state() 20 3.977e-05 4.505e-05 5.079e-05 0.00% Castro::advance() 10 3.446e-05 4.199e-05 4.825e-05 0.00% Castro::construct_new_gravity() 10 3.516e-05 3.835e-05 4.448e-05 0.00% FabArrayBase::CPC::define() 2 2.099e-05 2.614e-05 3.944e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.439e-05 2.219e-05 3.428e-05 0.00% Castro::enforce_speed_limit() 62 2.811e-05 3.079e-05 3.411e-05 0.00% Castro::computeNewDt() 9 9.893e-06 1.79e-05 2.943e-05 0.00% Castro::expand_state() 10 1.812e-05 2.321e-05 2.89e-05 0.00% Castro::check_for_nan() 20 1.904e-05 2.116e-05 2.435e-05 0.00% Castro::post_timestep() 10 1.231e-05 1.456e-05 1.686e-05 0.00% Gravity::swapTimeLevels() 10 1.086e-05 1.348e-05 1.462e-05 0.00% Gravity::set_mass_offset() 10 8.675e-06 1.002e-05 1.281e-05 0.00% Amr::initSubcycle() 1 9.109e-06 9.799e-06 1.046e-05 0.00% Amr::initialInit() 1 1.327e-06 2.732e-06 1.042e-05 0.00% Castro::create_source_corrector() 10 6.795e-06 7.93e-06 9.511e-06 0.00% Castro::retry_advance_ctu() 10 6.113e-06 7.343e-06 8.342e-06 0.00% Amr::init() 1 1.883e-06 3.061e-06 7.792e-06 0.00% Castro::FluxRegCrseInit 10 5.984e-06 6.766e-06 7.675e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.553e-06 5.081e-06 6.959e-06 0.00% Castro::computeInitialDt() 2 3.558e-06 4.473e-06 5.537e-06 0.00% Amr::InitializeInit() 1 1.909e-06 2.62e-06 5.283e-06 0.00% Castro::post_init() 1 2.939e-06 3.712e-06 4.338e-06 0.00% Castro::post_regrid() 1 1.988e-06 2.843e-06 3.755e-06 0.00% Castro::FluxRegFineAdd() 10 1.823e-06 2.185e-06 2.409e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.113e-06 1.299e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.595 3.597 3.597 100.00% Amr::coarseTimeStep() 10 3.38 3.38 3.38 93.97% Amr::timeStep() 10 3.366 3.367 3.368 93.63% Castro::advance() 10 3.35 3.351 3.352 93.18% Castro::subcycle_advance_ctu() 10 3.262 3.271 3.277 91.09% Castro::do_advance_ctu() 10 3.262 3.271 3.277 91.09% Castro::construct_ctu_hydro_source() 10 2.479 2.482 2.489 69.20% Gravity::make_radial_gravity() 21 0.3381 0.3449 0.3598 10.00% Gravity::get_new_grav_vector() 11 0.227 0.2332 0.2354 6.54% AmrLevel::FillPatch() 41 0.1884 0.2154 0.2301 6.40% Castro::construct_old_gravity() 10 0.1909 0.1978 0.2094 5.82% Gravity::get_old_grav_vector() 10 0.1902 0.1972 0.2088 5.81% Castro::construct_new_gravity() 10 0.2031 0.2073 0.2085 5.80% Amr::init() 1 0.1991 0.1993 0.1993 5.54% FillPatchIterator::Initialize 41 0.1604 0.1841 0.1976 5.49% Castro::initialize_do_advance() 10 0.1685 0.1814 0.1924 5.35% Amr::initialInit() 1 0.1809 0.1822 0.183 5.09% check_for_negative_density() 10 0.01799 0.08196 0.1578 4.39% FillPatchIterator::FillFromLevel0() 41 0.121 0.1373 0.153 4.25% FillPatchSingleLevel 41 0.1209 0.1372 0.1529 4.25% Amr::InitializeInit() 1 0.06223 0.1032 0.1525 4.24% Amr::defBaseLevel() 1 0.06222 0.1032 0.1525 4.24% Castro::expand_state() 10 0.1096 0.1257 0.1373 3.82% Castro::initData() 1 0.0447 0.0847 0.1327 3.69% Castro::clean_state() 62 0.1144 0.1171 0.1211 3.37% Amr::FinalizeInit() 1 0.0302 0.07901 0.1187 3.30% FabArray::ParallelCopy() 41 0.08235 0.1002 0.1173 3.26% Castro::estTimeStep() 21 0.04151 0.0842 0.1149 3.19% Castro::do_old_sources() 10 0.08871 0.09495 0.09909 2.75% Castro::computeInitialDt() 2 0.002361 0.0517 0.09247 2.57% amrex::Copy() 193 0.06634 0.07914 0.09003 2.50% FabArray::setVal() 143 0.0644 0.07364 0.08744 2.43% Castro::initialize_advance() 10 0.0711 0.07648 0.08508 2.37% FabArray::ParallelCopy_finish() 41 0.03917 0.0582 0.08175 2.27% Castro::do_new_sources() 10 0.05953 0.06648 0.07712 2.14% Castro::computeTemp() 63 0.06734 0.06891 0.0705 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04793 0.0492 0.05057 1.41% Castro::reset_internal_energy(Fab) 1008 0.04764 0.0489 0.05028 1.40% Castro::normalize_species() 62 0.04088 0.0421 0.04394 1.22% FabArray::ParallelCopy_nowait() 41 0.03546 0.04195 0.04391 1.22% StateDataPhysBCFunct::() 41 0.03371 0.03691 0.03934 1.09% StateData::FillBoundary(geom) 41 0.03362 0.03682 0.03924 1.09% Castro::construct_new_source() 50 0.02847 0.03113 0.03567 0.99% Castro::finalize_do_advance() 10 0.01405 0.02485 0.03279 0.91% Gravity::interpolate_monopole_grav() 21 0.02827 0.02875 0.02947 0.82% Castro::construct_new_gravity_source() 10 0.0223 0.02493 0.02944 0.82% Amr::writePlotFile() 2 0.02682 0.02758 0.02868 0.80% Castro::post_init() 1 0.02576 0.02697 0.02773 0.77% VisMF::Write(FabArray) 2 0.01391 0.0146 0.01731 0.48% Castro::post_timestep() 10 0.01546 0.0157 0.01603 0.45% Castro::apply_source_to_state() 20 0.01081 0.01255 0.01343 0.37% FabArray::Saxpy() 20 0.01076 0.0125 0.01338 0.37% FabArray::setDomainBndry() 41 0.008805 0.01166 0.01292 0.36% Castro::Castro() 1 0.01142 0.01192 0.01271 0.35% Castro::check_for_nan() 20 0.00944 0.01051 0.01148 0.32% MultiFab::contains_nan() 20 0.009421 0.01049 0.01146 0.32% Castro::construct_old_source() 50 0.007118 0.009588 0.01021 0.28% Castro::construct_old_gravity_source() 10 0.007067 0.009522 0.01014 0.28% Castro::computeNewDt() 9 0.009217 0.009239 0.009249 0.26% Castro::initMFs() 1 0.007358 0.007875 0.008722 0.24% Castro::enforce_min_density() 62 0.006574 0.00682 0.007354 0.20% AmrLevel::AmrLevel(dm) 1 0.005982 0.00633 0.006881 0.19% StateData::define() 4 0.005965 0.006308 0.006853 0.19% Castro::swap_state_time_levels() 10 0.003424 0.004601 0.004856 0.14% Castro::finalize_advance() 10 0.002942 0.0035 0.004533 0.13% Castro::buildMetrics() 1 0.001845 0.001962 0.002137 0.06% Castro::post_regrid() 1 0.00154 0.001619 0.001664 0.05% Amr::InitAmr() 1 0.0002924 0.0003288 0.0004812 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.312e-05 0.0001809 0.0002142 0.01% DistributionMapping::LeastUsedCPUs() 1 8.65e-06 0.0001747 0.0002063 0.01% FabArrayBase::getCPC() 41 6.594e-05 8.275e-05 0.0001033 0.00% Castro::enforce_consistent_e() 1 8.054e-05 8.607e-05 9.18e-05 0.00% Amr::writeSmallPlotFile() 1 2.805e-05 5.154e-05 6.733e-05 0.00% FabArrayBase::CPC::define() 2 2.099e-05 2.614e-05 3.944e-05 0.00% Castro::enforce_speed_limit() 62 2.811e-05 3.079e-05 3.411e-05 0.00% Gravity::swapTimeLevels() 10 1.086e-05 1.348e-05 1.462e-05 0.00% Gravity::set_mass_offset() 10 8.675e-06 1.002e-05 1.281e-05 0.00% Amr::initSubcycle() 1 9.109e-06 9.799e-06 1.046e-05 0.00% Castro::create_source_corrector() 10 6.795e-06 7.93e-06 9.511e-06 0.00% Castro::retry_advance_ctu() 10 6.113e-06 7.343e-06 8.342e-06 0.00% Castro::FluxRegCrseInit 10 5.984e-06 6.766e-06 7.675e-06 0.00% Castro::FluxRegFineAdd() 10 1.823e-06 2.185e-06 2.409e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.113e-06 1.299e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-29-g3291c074b67a) finalized