MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-30-g3396b1df1175) initialized Starting run at 05:23:34 UTC on 2023-08-15. Successfully read inputs file ... Castro git describe: 23.08-5-g5303a2cd5 AMReX git describe: 23.08-30-g3396b1df1 Microphysics git describe: 23.08-9-g255c3999 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014250386 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366515595 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344422422 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337522741 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338799867 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355477871 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.379327127 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.32503743 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.345392799 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.328288051 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313170735 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010279954 seconds Ending run at 05:23:38 UTC on 2023-08-15. Run time = 3.658600621 Run time without initialization = 3.449042915 Average number of zones advanced per microsecond: 0.760 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.658 ... 3.658 ... 3.659 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2786 2.3745 2.4560 67.13% Gravity::make_radial_gravity() 21 0.3263 0.3391 0.356 9.73% check_for_negative_density() 10 0.03307 0.1188 0.2169 5.93% Castro::estTimeStep() 21 0.04706 0.1019 0.1524 4.16% Castro::initData() 1 0.0387 0.08421 0.1397 3.82% FabArray::ParallelCopy_finish() 41 0.05045 0.06911 0.1169 3.20% amrex::Copy() 193 0.05939 0.07923 0.08754 2.39% FabArray::setVal() 143 0.0627 0.07011 0.08061 2.20% Castro::reset_internal_energy(Fab) 1008 0.04755 0.04902 0.05056 1.38% FabArray::ParallelCopy_nowait() 41 0.03204 0.04072 0.04421 1.21% Castro::normalize_species() 62 0.04077 0.04168 0.04256 1.16% StateData::FillBoundary(geom) 41 0.0342 0.03834 0.04238 1.16% FillPatchIterator::Initialize 41 0.02602 0.03321 0.03698 1.01% Gravity::interpolate_monopole_grav() 21 0.02855 0.0288 0.029 0.79% Castro::construct_new_gravity_source() 10 0.02265 0.02451 0.02755 0.75% Castro::computeTemp() 63 0.01897 0.02 0.02176 0.59% Castro::initialize_do_advance() 10 0.01131 0.0176 0.02129 0.58% VisMF::Write(FabArray) 2 0.01321 0.01384 0.01596 0.44% FabArray::Saxpy() 20 0.009188 0.01254 0.01383 0.38% Castro::initialize_advance() 10 0.003755 0.01011 0.0138 0.38% FabArray::setDomainBndry() 41 0.008155 0.01197 0.01349 0.37% MultiFab::contains_nan() 20 0.01016 0.0111 0.01322 0.36% Castro::construct_old_gravity_source() 10 0.006085 0.009381 0.01043 0.29% Castro::initMFs() 1 0.006152 0.00721 0.00959 0.26% Amr::writePlotFile() 2 0.005927 0.008377 0.008958 0.24% Castro::enforce_min_density() 62 0.00723 0.007581 0.007841 0.21% StateData::define() 4 0.005088 0.00592 0.007651 0.21% Castro::construct_new_source() 50 0.005455 0.006322 0.006671 0.18% Gravity::get_new_grav_vector() 11 0.002769 0.004112 0.005755 0.16% Castro::swap_state_time_levels() 10 0.003096 0.004083 0.004316 0.12% main() 1 0.003258 0.003712 0.004107 0.11% Amr::coarseTimeStep() 10 0.002242 0.002686 0.003086 0.08% Gravity::get_old_grav_vector() 10 0.001394 0.002087 0.002639 0.07% Castro::buildMetrics() 1 0.001468 0.001698 0.002184 0.06% Castro::finalize_do_advance() 10 0.0004194 0.001048 0.001293 0.04% AmrLevel::FillPatch() 41 0.0006642 0.0007462 0.0008131 0.02% Amr::timeStep() 10 0.0001888 0.0002576 0.0005508 0.02% Amr::InitAmr() 1 0.000272 0.0003516 0.0005139 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00029 0.0003052 0.0003232 0.01% DistributionMapping::LeastUsedCPUs() 1 8.059e-06 0.0002021 0.0002881 0.01% Castro::do_advance_ctu() 10 0.0001164 0.0001707 0.0001945 0.01% Castro::clean_state() 62 0.0001228 0.000153 0.0001854 0.01% Castro::finalize_advance() 10 7.705e-05 0.0001137 0.0001588 0.00% Castro::do_old_sources() 10 5.947e-05 9.701e-05 0.0001184 0.00% StateDataPhysBCFunct::() 41 7.75e-05 9.537e-05 0.0001118 0.00% FillPatchIterator::FillFromLevel0() 41 8.673e-05 0.0001008 0.0001094 0.00% Castro::construct_old_source() 50 4.804e-05 7.059e-05 9.699e-05 0.00% Castro::enforce_consistent_e() 1 7.76e-05 8.349e-05 8.964e-05 0.00% Amr::FinalizeInit() 1 4.103e-06 1.538e-05 8.593e-05 0.00% Castro::do_new_sources() 10 4.377e-05 6.764e-05 8.322e-05 0.00% FabArray::ParallelCopy() 41 5.845e-05 7.214e-05 8.091e-05 0.00% FillPatchSingleLevel 41 6.856e-05 7.389e-05 7.8e-05 0.00% Castro::Castro() 1 5.428e-05 6.418e-05 7.414e-05 0.00% FabArrayBase::getCPC() 41 3.813e-05 5.35e-05 6.815e-05 0.00% Castro::advance() 10 3.786e-05 4.977e-05 6.431e-05 0.00% Amr::writeSmallPlotFile() 1 3.04e-05 5.076e-05 6.306e-05 0.00% Castro::subcycle_advance_ctu() 10 3.71e-05 4.868e-05 6.253e-05 0.00% Castro::check_for_nan() 20 2.003e-05 2.705e-05 5.87e-05 0.00% Castro::construct_new_gravity() 10 3.198e-05 4.417e-05 5.826e-05 0.00% Castro::apply_source_to_state() 20 3.082e-05 4.21e-05 4.95e-05 0.00% Castro::construct_old_gravity() 10 4.223e-05 4.734e-05 4.946e-05 0.00% Amr::defBaseLevel() 1 2.333e-05 3.255e-05 4.386e-05 0.00% Castro::enforce_speed_limit() 62 2.559e-05 3.111e-05 3.686e-05 0.00% Castro::expand_state() 10 1.598e-05 2.419e-05 3.403e-05 0.00% FabArrayBase::CPC::define() 2 2.112e-05 2.481e-05 3.013e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.485e-05 2.045e-05 2.874e-05 0.00% Gravity::swapTimeLevels() 10 7.295e-06 1.383e-05 2.166e-05 0.00% Castro::post_timestep() 10 1.285e-05 1.535e-05 2.082e-05 0.00% Amr::initSubcycle() 1 8.828e-06 1.136e-05 1.787e-05 0.00% Gravity::set_mass_offset() 10 9.029e-06 1.139e-05 1.376e-05 0.00% Castro::computeNewDt() 9 1.04e-05 1.179e-05 1.288e-05 0.00% Castro::create_source_corrector() 10 6.921e-06 9.423e-06 1.146e-05 0.00% Castro::FluxRegCrseInit 10 6.576e-06 7.673e-06 9.066e-06 0.00% Castro::retry_advance_ctu() 10 7.417e-06 7.913e-06 8.531e-06 0.00% Castro::post_regrid() 1 1.779e-06 4.024e-06 8.336e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.753e-06 5.594e-06 6.985e-06 0.00% Castro::computeInitialDt() 2 3.169e-06 4.699e-06 6.721e-06 0.00% Castro::post_init() 1 2.529e-06 3.829e-06 4.593e-06 0.00% Amr::InitializeInit() 1 1.798e-06 2.545e-06 4.359e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.371e-06 2.729e-06 0.00% Amr::init() 1 1.918e-06 2.169e-06 2.549e-06 0.00% DistributionMapping::Distribute() 1 1.009e-06 1.535e-06 2.092e-06 0.00% Amr::initialInit() 1 1.314e-06 1.649e-06 2.021e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.658 3.658 3.659 100.00% Amr::coarseTimeStep() 10 3.435 3.435 3.435 93.88% Amr::timeStep() 10 3.421 3.422 3.422 93.53% Castro::advance() 10 3.405 3.405 3.406 93.09% Castro::subcycle_advance_ctu() 10 3.321 3.33 3.339 91.27% Castro::do_advance_ctu() 10 3.321 3.33 3.339 91.27% Castro::construct_ctu_hydro_source() 10 2.511 2.515 2.521 68.92% Gravity::make_radial_gravity() 21 0.3432 0.3559 0.368 10.06% AmrLevel::FillPatch() 41 0.2079 0.2248 0.2421 6.62% Gravity::get_new_grav_vector() 11 0.2321 0.2367 0.2398 6.56% FillPatchIterator::Initialize 41 0.1806 0.1938 0.2207 6.03% check_for_negative_density() 10 0.03307 0.1188 0.2169 5.93% Castro::construct_old_gravity() 10 0.1974 0.2063 0.2151 5.88% Gravity::get_old_grav_vector() 10 0.1967 0.2057 0.2145 5.86% Castro::construct_new_gravity() 10 0.2063 0.2106 0.2131 5.82% Amr::init() 1 0.2089 0.2091 0.2091 5.72% Castro::initialize_do_advance() 10 0.1755 0.1864 0.1956 5.35% Amr::initialInit() 1 0.1944 0.1945 0.1948 5.32% FillPatchIterator::FillFromLevel0() 41 0.1364 0.1486 0.1865 5.10% FillPatchSingleLevel 41 0.1363 0.1485 0.1864 5.10% Amr::InitializeInit() 1 0.05793 0.1051 0.1645 4.50% Amr::defBaseLevel() 1 0.05792 0.1051 0.1645 4.50% Castro::estTimeStep() 21 0.04706 0.1019 0.1524 4.16% FabArray::ParallelCopy() 41 0.09377 0.11 0.1491 4.07% Castro::initData() 1 0.04252 0.08792 0.1432 3.91% Castro::expand_state() 10 0.1199 0.1311 0.1405 3.84% Amr::FinalizeInit() 1 0.02992 0.08944 0.1367 3.74% Castro::clean_state() 62 0.1147 0.1179 0.1204 3.29% FabArray::ParallelCopy_finish() 41 0.05045 0.06911 0.1169 3.20% Castro::computeInitialDt() 2 0.002253 0.06186 0.1091 2.98% Castro::do_old_sources() 10 0.09342 0.09788 0.1003 2.74% amrex::Copy() 193 0.05939 0.07923 0.08754 2.39% FabArray::setVal() 143 0.0627 0.07011 0.08061 2.20% Castro::initialize_advance() 10 0.06165 0.07176 0.08005 2.19% Castro::do_new_sources() 10 0.05979 0.06551 0.07334 2.00% Castro::computeTemp() 63 0.06729 0.06932 0.07176 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04785 0.04932 0.05089 1.39% Castro::reset_internal_energy(Fab) 1008 0.04755 0.04902 0.05056 1.38% FabArray::ParallelCopy_nowait() 41 0.03211 0.0408 0.04428 1.21% Castro::normalize_species() 62 0.04077 0.04168 0.04256 1.16% StateDataPhysBCFunct::() 41 0.0343 0.03843 0.04248 1.16% StateData::FillBoundary(geom) 41 0.0342 0.03834 0.04238 1.16% Castro::finalize_do_advance() 10 0.02397 0.03195 0.03705 1.01% Castro::construct_new_source() 50 0.02811 0.03083 0.03383 0.92% Gravity::interpolate_monopole_grav() 21 0.02855 0.0288 0.029 0.79% Castro::construct_new_gravity_source() 10 0.02265 0.02451 0.02755 0.75% Castro::post_init() 1 0.02662 0.02715 0.02742 0.75% Amr::writePlotFile() 2 0.02476 0.02492 0.0251 0.69% Castro::post_timestep() 10 0.0155 0.01603 0.01656 0.45% VisMF::Write(FabArray) 2 0.01321 0.01384 0.01596 0.44% Castro::apply_source_to_state() 20 0.009219 0.01258 0.01388 0.38% FabArray::Saxpy() 20 0.009188 0.01254 0.01383 0.38% Castro::Castro() 1 0.009885 0.01096 0.01355 0.37% FabArray::setDomainBndry() 41 0.008155 0.01197 0.01349 0.37% Castro::check_for_nan() 20 0.01018 0.01113 0.01327 0.36% MultiFab::contains_nan() 20 0.01016 0.0111 0.01322 0.36% Castro::construct_old_source() 50 0.006133 0.009452 0.01051 0.29% Castro::construct_old_gravity_source() 10 0.006085 0.009381 0.01043 0.29% Castro::initMFs() 1 0.006152 0.00721 0.00959 0.26% Castro::computeNewDt() 9 0.009147 0.009154 0.00916 0.25% Castro::enforce_min_density() 62 0.00723 0.007581 0.007841 0.21% AmrLevel::AmrLevel(dm) 1 0.005107 0.005941 0.00768 0.21% StateData::define() 4 0.005088 0.00592 0.007651 0.21% Castro::finalize_advance() 10 0.003349 0.003883 0.004367 0.12% Castro::swap_state_time_levels() 10 0.003096 0.004083 0.004316 0.12% Castro::buildMetrics() 1 0.00158 0.00184 0.002394 0.07% Castro::post_regrid() 1 0.001529 0.001638 0.001983 0.05% Amr::InitAmr() 1 0.0002818 0.000363 0.0005317 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.462e-05 0.0002092 0.0002964 0.01% DistributionMapping::LeastUsedCPUs() 1 8.059e-06 0.0002021 0.0002881 0.01% FabArrayBase::getCPC() 41 6.393e-05 7.83e-05 9.065e-05 0.00% Castro::enforce_consistent_e() 1 7.76e-05 8.349e-05 8.964e-05 0.00% Amr::writeSmallPlotFile() 1 3.04e-05 5.076e-05 6.306e-05 0.00% Castro::enforce_speed_limit() 62 2.559e-05 3.111e-05 3.686e-05 0.00% FabArrayBase::CPC::define() 2 2.112e-05 2.481e-05 3.013e-05 0.00% Gravity::swapTimeLevels() 10 7.295e-06 1.383e-05 2.166e-05 0.00% Amr::initSubcycle() 1 8.828e-06 1.136e-05 1.787e-05 0.00% Gravity::set_mass_offset() 10 9.029e-06 1.139e-05 1.376e-05 0.00% Castro::create_source_corrector() 10 6.921e-06 9.423e-06 1.146e-05 0.00% Castro::FluxRegCrseInit 10 6.576e-06 7.673e-06 9.066e-06 0.00% Castro::retry_advance_ctu() 10 7.417e-06 7.913e-06 8.531e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.371e-06 2.729e-06 0.00% DistributionMapping::Distribute() 1 1.009e-06 1.535e-06 2.092e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-30-g3396b1df1175) finalized