MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-30-g3396b1df1175) initialized Starting run at 05:28:24 UTC on 2023-08-16. Successfully read inputs file ... Castro git describe: 23.08-5-g5303a2cd5 AMReX git describe: 23.08-30-g3396b1df1 Microphysics git describe: 23.08-11-g9ecfd8d2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015086798 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364817268 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.334569466 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.344252472 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330649123 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.332063462 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.363528366 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315188399 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312443478 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312647552 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312382841 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00987276 seconds Ending run at 05:28:28 UTC on 2023-08-16. Run time = 3.5404697 Run time without initialization = 3.338050277 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.539 ... 3.54 ... 3.541 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2733 2.3396 2.4057 67.95% Gravity::make_radial_gravity() 21 0.3213 0.3274 0.3366 9.51% check_for_negative_density() 10 0.01785 0.08757 0.1561 4.41% Castro::initData() 1 0.04626 0.08415 0.1339 3.78% Castro::estTimeStep() 21 0.02967 0.07786 0.1172 3.31% FabArray::ParallelCopy_finish() 41 0.03311 0.06163 0.1127 3.18% amrex::Copy() 193 0.06394 0.07554 0.08401 2.37% FabArray::setVal() 143 0.05268 0.07 0.08333 2.35% Castro::reset_internal_energy(Fab) 1008 0.04764 0.04908 0.04989 1.41% Castro::normalize_species() 62 0.04116 0.04231 0.04352 1.23% FabArray::ParallelCopy_nowait() 41 0.03301 0.0402 0.04287 1.21% StateData::FillBoundary(geom) 41 0.0344 0.03781 0.04079 1.15% FillPatchIterator::Initialize 41 0.02677 0.03195 0.03804 1.07% Gravity::interpolate_monopole_grav() 21 0.02854 0.02872 0.02926 0.83% Castro::construct_new_gravity_source() 10 0.02147 0.02373 0.02577 0.73% Castro::initialize_do_advance() 10 0.01156 0.0177 0.0226 0.64% Castro::computeTemp() 63 0.01937 0.01995 0.02059 0.58% VisMF::Write(FabArray) 2 0.01274 0.0135 0.01624 0.46% Castro::initialize_advance() 10 0.00384 0.01065 0.01414 0.40% FabArray::Saxpy() 20 0.01058 0.01253 0.01319 0.37% FabArray::setDomainBndry() 41 0.008369 0.01087 0.0124 0.35% MultiFab::contains_nan() 20 0.009674 0.01056 0.01177 0.33% Amr::writePlotFile() 2 0.006425 0.009466 0.01059 0.30% Castro::construct_old_gravity_source() 10 0.006344 0.009194 0.0098 0.28% Castro::enforce_min_density() 62 0.007286 0.007503 0.007758 0.22% Castro::initMFs() 1 0.006207 0.006829 0.007285 0.21% Castro::construct_new_source() 50 0.005613 0.006395 0.006762 0.19% StateData::define() 4 0.005145 0.005592 0.005864 0.17% main() 1 0.003267 0.004198 0.004999 0.14% Castro::swap_state_time_levels() 10 0.003377 0.00425 0.004816 0.14% Gravity::get_new_grav_vector() 11 0.00297 0.003511 0.003849 0.11% Gravity::get_old_grav_vector() 10 0.001563 0.001885 0.002209 0.06% Amr::coarseTimeStep() 10 0.001108 0.001411 0.001837 0.05% Castro::buildMetrics() 1 0.001467 0.001626 0.001736 0.05% Castro::finalize_do_advance() 10 0.0005205 0.001011 0.001247 0.04% AmrLevel::FillPatch() 41 0.0007113 0.000792 0.0008856 0.03% Amr::InitAmr() 1 0.0002834 0.0003205 0.0004693 0.01% Amr::timeStep() 10 0.0001781 0.0002273 0.0003644 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002764 0.0003003 0.0003187 0.01% Castro::do_advance_ctu() 10 0.0001364 0.0001582 0.0001971 0.01% DistributionMapping::LeastUsedCPUs() 1 8.312e-06 0.0001625 0.000196 0.01% StateDataPhysBCFunct::() 41 8.175e-05 9.875e-05 0.000158 0.00% Castro::clean_state() 62 0.00013 0.0001421 0.0001512 0.00% Castro::finalize_advance() 10 7.61e-05 9.936e-05 0.0001267 0.00% FillPatchIterator::FillFromLevel0() 41 8.5e-05 9.929e-05 0.0001056 0.00% Castro::do_old_sources() 10 6.51e-05 8.894e-05 0.000101 0.00% Castro::enforce_consistent_e() 1 7.76e-05 8.786e-05 0.0001006 0.00% Amr::FinalizeInit() 1 4.381e-06 1.57e-05 8.9e-05 0.00% Castro::construct_old_source() 50 4.983e-05 6.751e-05 8.627e-05 0.00% FabArray::ParallelCopy() 41 6.195e-05 6.926e-05 7.848e-05 0.00% Castro::do_new_sources() 10 4.72e-05 6.306e-05 7.507e-05 0.00% FillPatchSingleLevel 41 6.097e-05 6.879e-05 7.336e-05 0.00% Castro::subcycle_advance_ctu() 10 4.803e-05 5.53e-05 7.227e-05 0.00% FabArrayBase::getCPC() 41 4.559e-05 5.512e-05 7.08e-05 0.00% Castro::Castro() 1 5.64e-05 6.279e-05 6.758e-05 0.00% Amr::writeSmallPlotFile() 1 2.801e-05 4.666e-05 6.562e-05 0.00% Castro::advance() 10 3.273e-05 4.669e-05 5.427e-05 0.00% Castro::apply_source_to_state() 20 2.871e-05 4.138e-05 5.368e-05 0.00% Castro::construct_old_gravity() 10 3.868e-05 4.546e-05 5.276e-05 0.00% Amr::defBaseLevel() 1 2.535e-05 3.887e-05 5.168e-05 0.00% Castro::construct_new_gravity() 10 3.342e-05 3.891e-05 4.554e-05 0.00% Castro::enforce_speed_limit() 62 2.911e-05 3.222e-05 3.713e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.373e-05 2.231e-05 3.464e-05 0.00% Castro::expand_state() 10 1.851e-05 2.189e-05 2.963e-05 0.00% FabArrayBase::CPC::define() 2 2.103e-05 2.505e-05 2.835e-05 0.00% Castro::check_for_nan() 20 1.93e-05 2.146e-05 2.336e-05 0.00% Castro::post_timestep() 10 1.31e-05 1.515e-05 1.905e-05 0.00% Gravity::swapTimeLevels() 10 9.591e-06 1.299e-05 1.608e-05 0.00% Castro::computeNewDt() 9 9.021e-06 1.075e-05 1.278e-05 0.00% Gravity::set_mass_offset() 10 7.605e-06 9.854e-06 1.223e-05 0.00% Amr::initSubcycle() 1 9.311e-06 1.028e-05 1.094e-05 0.00% Castro::retry_advance_ctu() 10 6.152e-06 7.655e-06 9.825e-06 0.00% Castro::create_source_corrector() 10 7.078e-06 8.273e-06 9.708e-06 0.00% Castro::post_regrid() 1 2.3e-06 4.263e-06 9.539e-06 0.00% Castro::FluxRegCrseInit 10 6.236e-06 7.214e-06 8.704e-06 0.00% Amr::initialInit() 1 1.464e-06 2.652e-06 8.27e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.998e-06 4.955e-06 7.056e-06 0.00% Castro::computeInitialDt() 2 3.782e-06 4.975e-06 6.796e-06 0.00% Amr::InitializeInit() 1 1.848e-06 2.508e-06 5.431e-06 0.00% Castro::post_init() 1 3.093e-06 3.769e-06 4.46e-06 0.00% Castro::FluxRegFineAdd() 10 2.069e-06 2.41e-06 2.923e-06 0.00% Amr::init() 1 2.24e-06 2.419e-06 2.665e-06 0.00% DistributionMapping::Distribute() 1 1.074e-06 1.288e-06 2.057e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.539 3.54 3.541 100.00% Amr::coarseTimeStep() 10 3.323 3.323 3.323 93.86% Amr::timeStep() 10 3.311 3.312 3.312 93.54% Castro::advance() 10 3.295 3.295 3.296 93.08% Castro::subcycle_advance_ctu() 10 3.21 3.219 3.24 91.51% Castro::do_advance_ctu() 10 3.21 3.219 3.24 91.51% Castro::construct_ctu_hydro_source() 10 2.445 2.448 2.451 69.22% Gravity::make_radial_gravity() 21 0.3367 0.3431 0.3496 9.88% AmrLevel::FillPatch() 41 0.1842 0.2121 0.2421 6.84% Gravity::get_new_grav_vector() 11 0.2233 0.2249 0.2261 6.39% FillPatchIterator::Initialize 41 0.1573 0.1829 0.2181 6.16% Castro::construct_old_gravity() 10 0.1967 0.2019 0.2075 5.86% Gravity::get_old_grav_vector() 10 0.1962 0.2012 0.2069 5.84% Amr::init() 1 0.2018 0.202 0.202 5.71% Castro::construct_new_gravity() 10 0.1972 0.1982 0.1987 5.61% Castro::initialize_do_advance() 10 0.1674 0.1789 0.1939 5.48% Amr::initialInit() 1 0.186 0.1864 0.1867 5.27% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1401 0.1829 5.17% FillPatchSingleLevel 41 0.1155 0.14 0.1828 5.16% check_for_negative_density() 10 0.01785 0.08757 0.1561 4.41% Amr::InitializeInit() 1 0.06804 0.1048 0.1555 4.39% Amr::defBaseLevel() 1 0.06804 0.1048 0.1555 4.39% FabArray::ParallelCopy() 41 0.07612 0.102 0.1459 4.12% Castro::expand_state() 10 0.1087 0.124 0.1457 4.11% Castro::initData() 1 0.05066 0.08829 0.1382 3.90% Castro::clean_state() 62 0.1153 0.1183 0.1207 3.41% Amr::FinalizeInit() 1 0.03116 0.08164 0.1182 3.34% Castro::estTimeStep() 21 0.02967 0.07786 0.1172 3.31% FabArray::ParallelCopy_finish() 41 0.03311 0.06163 0.1127 3.18% Castro::do_old_sources() 10 0.09111 0.09601 0.1 2.83% Castro::computeInitialDt() 2 0.002505 0.05326 0.09001 2.54% amrex::Copy() 193 0.06394 0.07554 0.08401 2.37% FabArray::setVal() 143 0.05268 0.07 0.08333 2.35% Castro::initialize_advance() 10 0.05155 0.07263 0.08178 2.31% Castro::computeTemp() 63 0.06728 0.06932 0.07079 2.00% Castro::do_new_sources() 10 0.05996 0.06362 0.0685 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04792 0.04938 0.0502 1.42% Castro::reset_internal_energy(Fab) 1008 0.04764 0.04908 0.04989 1.41% Castro::normalize_species() 62 0.04116 0.04231 0.04352 1.23% FabArray::ParallelCopy_nowait() 41 0.03311 0.04028 0.04294 1.21% StateDataPhysBCFunct::() 41 0.03448 0.03791 0.0409 1.16% StateData::FillBoundary(geom) 41 0.0344 0.03781 0.04079 1.15% Castro::construct_new_source() 50 0.02708 0.03013 0.03249 0.92% Gravity::interpolate_monopole_grav() 21 0.02854 0.02872 0.02926 0.83% Castro::post_init() 1 0.02697 0.02776 0.0281 0.79% Amr::writePlotFile() 2 0.02521 0.02549 0.02597 0.73% Castro::construct_new_gravity_source() 10 0.02147 0.02373 0.02577 0.73% Castro::finalize_do_advance() 10 0.01179 0.01661 0.01991 0.56% VisMF::Write(FabArray) 2 0.01274 0.0135 0.01624 0.46% Castro::post_timestep() 10 0.01565 0.01592 0.01617 0.46% Castro::apply_source_to_state() 20 0.01062 0.01257 0.01323 0.37% FabArray::Saxpy() 20 0.01058 0.01253 0.01319 0.37% FabArray::setDomainBndry() 41 0.008369 0.01087 0.0124 0.35% Castro::check_for_nan() 20 0.009697 0.01058 0.01179 0.33% MultiFab::contains_nan() 20 0.009674 0.01056 0.01177 0.33% Castro::Castro() 1 0.00949 0.01066 0.01142 0.32% Castro::construct_old_source() 50 0.006395 0.009261 0.009879 0.28% Castro::construct_old_gravity_source() 10 0.006344 0.009194 0.0098 0.28% Castro::computeNewDt() 9 0.009005 0.009018 0.009027 0.25% Castro::enforce_min_density() 62 0.007286 0.007503 0.007758 0.22% Castro::initMFs() 1 0.006207 0.006829 0.007285 0.21% AmrLevel::AmrLevel(dm) 1 0.005161 0.005615 0.005881 0.17% StateData::define() 4 0.005145 0.005592 0.005864 0.17% Castro::swap_state_time_levels() 10 0.003377 0.00425 0.004816 0.14% Castro::finalize_advance() 10 0.003114 0.0033 0.003492 0.10% Castro::post_regrid() 1 0.001545 0.0019 0.002879 0.08% Castro::buildMetrics() 1 0.001581 0.001758 0.001875 0.05% Amr::InitAmr() 1 0.0002933 0.0003308 0.0004797 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.341e-05 0.0001687 0.0002041 0.01% DistributionMapping::LeastUsedCPUs() 1 8.312e-06 0.0001625 0.000196 0.01% Castro::enforce_consistent_e() 1 7.76e-05 8.786e-05 0.0001006 0.00% FabArrayBase::getCPC() 41 6.797e-05 8.017e-05 9.699e-05 0.00% Amr::writeSmallPlotFile() 1 2.801e-05 4.666e-05 6.562e-05 0.00% Castro::enforce_speed_limit() 62 2.911e-05 3.222e-05 3.713e-05 0.00% FabArrayBase::CPC::define() 2 2.103e-05 2.505e-05 2.835e-05 0.00% Gravity::swapTimeLevels() 10 9.591e-06 1.299e-05 1.608e-05 0.00% Gravity::set_mass_offset() 10 7.605e-06 9.854e-06 1.223e-05 0.00% Amr::initSubcycle() 1 9.311e-06 1.028e-05 1.094e-05 0.00% Castro::retry_advance_ctu() 10 6.152e-06 7.655e-06 9.825e-06 0.00% Castro::create_source_corrector() 10 7.078e-06 8.273e-06 9.708e-06 0.00% Castro::FluxRegCrseInit 10 6.236e-06 7.214e-06 8.704e-06 0.00% Castro::FluxRegFineAdd() 10 2.069e-06 2.41e-06 2.923e-06 0.00% DistributionMapping::Distribute() 1 1.074e-06 1.288e-06 2.057e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 36 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-30-g3396b1df1175) finalized