MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-31-g435281069858) initialized Starting run at 05:20:48 UTC on 2023-08-17. Successfully read inputs file ... Castro git describe: 23.08-5-g5303a2cd5 AMReX git describe: 23.08-31-g435281069 Microphysics git describe: 23.08-11-g9ecfd8d2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015076257 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370310327 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.365059958 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34596256 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332225288 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352654674 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342359559 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315030947 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314775852 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315040418 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314550954 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009877071 seconds Ending run at 05:20:52 UTC on 2023-08-17. Run time = 3.588578027 Run time without initialization = 3.383144929 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.588 ... 3.588 ... 3.589 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3363 2.3694 2.4236 67.53% Gravity::make_radial_gravity() 21 0.3247 0.3386 0.3489 9.72% Castro::estTimeStep() 21 0.02606 0.0891 0.141 3.93% Castro::initData() 1 0.03885 0.08342 0.1365 3.80% check_for_negative_density() 10 0.02694 0.0843 0.1199 3.34% FabArray::setVal() 143 0.06369 0.07278 0.08679 2.42% amrex::Copy() 193 0.06517 0.07629 0.08482 2.36% FabArray::ParallelCopy_finish() 41 0.03606 0.05421 0.08209 2.29% Castro::reset_internal_energy(Fab) 1008 0.04708 0.0496 0.05293 1.47% Castro::normalize_species() 62 0.04127 0.04224 0.04397 1.23% StateData::FillBoundary(geom) 41 0.03499 0.03804 0.04148 1.16% FabArray::ParallelCopy_nowait() 41 0.03572 0.03967 0.04132 1.15% FillPatchIterator::Initialize 41 0.02768 0.03166 0.03437 0.96% Gravity::interpolate_monopole_grav() 21 0.02859 0.02896 0.02949 0.82% Castro::construct_new_gravity_source() 10 0.02223 0.02475 0.0283 0.79% Castro::computeTemp() 63 0.01889 0.0201 0.02139 0.60% Castro::initialize_do_advance() 10 0.01211 0.01774 0.02135 0.59% VisMF::Write(FabArray) 2 0.01285 0.01367 0.01621 0.45% Castro::initialize_advance() 10 0.00866 0.01135 0.0144 0.40% FabArray::Saxpy() 20 0.01088 0.01271 0.01349 0.38% FabArray::setDomainBndry() 41 0.009054 0.0111 0.01224 0.34% MultiFab::contains_nan() 20 0.009754 0.01061 0.01161 0.32% Castro::construct_old_gravity_source() 10 0.007106 0.009439 0.009865 0.27% Amr::writePlotFile() 2 0.006206 0.008946 0.009663 0.27% Castro::enforce_min_density() 62 0.007341 0.007652 0.008049 0.22% Castro::initMFs() 1 0.00631 0.00688 0.007946 0.22% Castro::construct_new_source() 50 0.005842 0.006331 0.006749 0.19% StateData::define() 4 0.005292 0.005547 0.005959 0.17% Gravity::get_new_grav_vector() 11 0.002969 0.003685 0.005661 0.16% Castro::swap_state_time_levels() 10 0.003166 0.004279 0.005001 0.14% main() 1 0.003788 0.0042 0.004548 0.13% Amr::coarseTimeStep() 10 0.001068 0.00254 0.003565 0.10% Gravity::get_old_grav_vector() 10 0.001674 0.001947 0.002334 0.07% Castro::finalize_do_advance() 10 0.0003873 0.001325 0.001766 0.05% Castro::buildMetrics() 1 0.001466 0.001573 0.001755 0.05% AmrLevel::FillPatch() 41 0.0007145 0.0009304 0.001087 0.03% Amr::timeStep() 10 0.0001772 0.0002383 0.0004753 0.01% Amr::InitAmr() 1 0.0002608 0.0002964 0.0004045 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002832 0.0002949 0.0003195 0.01% Castro::clean_state() 62 0.0001345 0.0001661 0.0002309 0.01% Castro::do_advance_ctu() 10 0.000141 0.0001623 0.0001769 0.00% DistributionMapping::LeastUsedCPUs() 1 1.074e-05 0.0001188 0.0001474 0.00% Castro::do_old_sources() 10 7.457e-05 9.169e-05 0.0001166 0.00% Castro::finalize_advance() 10 8.285e-05 9.883e-05 0.000115 0.00% FillPatchIterator::FillFromLevel0() 41 8.936e-05 0.0001034 0.0001109 0.00% StateDataPhysBCFunct::() 41 8.188e-05 9.359e-05 0.0001006 0.00% Castro::enforce_consistent_e() 1 8.238e-05 8.929e-05 9.796e-05 0.00% Castro::construct_old_source() 50 5.238e-05 7.148e-05 8.842e-05 0.00% Castro::Castro() 1 6.099e-05 7.217e-05 8.14e-05 0.00% FillPatchSingleLevel 41 6.823e-05 7.118e-05 7.465e-05 0.00% Castro::do_new_sources() 10 5.643e-05 6.678e-05 7.4e-05 0.00% FabArray::ParallelCopy() 41 6.012e-05 6.937e-05 7.335e-05 0.00% Amr::FinalizeInit() 1 3.652e-06 1.312e-05 7.198e-05 0.00% FabArrayBase::getCPC() 41 4.569e-05 5.941e-05 7.128e-05 0.00% Amr::writeSmallPlotFile() 1 3.026e-05 5.237e-05 6.306e-05 0.00% Castro::subcycle_advance_ctu() 10 3.676e-05 5.188e-05 6.258e-05 0.00% Castro::construct_new_gravity() 10 3.57e-05 4.356e-05 5.586e-05 0.00% Castro::construct_old_gravity() 10 4.074e-05 4.544e-05 5.34e-05 0.00% Castro::apply_source_to_state() 20 3.309e-05 4.217e-05 4.615e-05 0.00% Castro::advance() 10 3.759e-05 4.261e-05 4.552e-05 0.00% Castro::enforce_speed_limit() 62 2.98e-05 3.169e-05 3.559e-05 0.00% Amr::defBaseLevel() 1 2.125e-05 2.867e-05 3.485e-05 0.00% FabArrayBase::CPC::define() 2 2.246e-05 2.605e-05 3.396e-05 0.00% Castro::expand_state() 10 1.922e-05 2.214e-05 2.54e-05 0.00% Castro::check_for_nan() 20 1.944e-05 2.217e-05 2.383e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.602e-05 1.786e-05 2.111e-05 0.00% Castro::post_timestep() 10 1.224e-05 1.457e-05 1.589e-05 0.00% Gravity::swapTimeLevels() 10 1.087e-05 1.269e-05 1.512e-05 0.00% Castro::retry_advance_ctu() 10 6.746e-06 9.869e-06 1.383e-05 0.00% Castro::computeNewDt() 9 9.246e-06 1.13e-05 1.261e-05 0.00% Gravity::set_mass_offset() 10 9.251e-06 1.045e-05 1.228e-05 0.00% Castro::create_source_corrector() 10 7.108e-06 8.589e-06 1.082e-05 0.00% Amr::initSubcycle() 1 9.077e-06 1.003e-05 1.069e-05 0.00% Castro::FluxRegCrseInit 10 5.651e-06 7.69e-06 8.905e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.582e-06 5.044e-06 7.06e-06 0.00% Castro::computeInitialDt() 2 3.719e-06 4.7e-06 5.236e-06 0.00% Castro::post_init() 1 3.127e-06 3.654e-06 4.886e-06 0.00% Castro::post_regrid() 1 2.212e-06 3.05e-06 4.106e-06 0.00% Amr::InitializeInit() 1 1.852e-06 2.332e-06 3.978e-06 0.00% Amr::init() 1 1.881e-06 2.331e-06 3.209e-06 0.00% Castro::FluxRegFineAdd() 10 2.149e-06 2.467e-06 2.856e-06 0.00% Amr::initialInit() 1 1.415e-06 1.722e-06 2.271e-06 0.00% DistributionMapping::Distribute() 1 1.037e-06 1.242e-06 1.643e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.588 3.588 3.589 100.00% Amr::coarseTimeStep() 10 3.369 3.369 3.369 93.87% Amr::timeStep() 10 3.354 3.355 3.357 93.54% Castro::advance() 10 3.338 3.339 3.34 93.08% Castro::subcycle_advance_ctu() 10 3.249 3.259 3.267 91.02% Castro::do_advance_ctu() 10 3.249 3.259 3.266 91.02% Castro::construct_ctu_hydro_source() 10 2.472 2.476 2.48 69.12% Gravity::make_radial_gravity() 21 0.3405 0.355 0.363 10.12% Gravity::get_new_grav_vector() 11 0.2289 0.2333 0.236 6.58% AmrLevel::FillPatch() 41 0.1802 0.2049 0.2203 6.14% Castro::construct_old_gravity() 10 0.1977 0.2054 0.2107 5.87% Gravity::get_old_grav_vector() 10 0.1971 0.2048 0.21 5.85% Castro::construct_new_gravity() 10 0.2026 0.2062 0.2081 5.80% Amr::init() 1 0.2049 0.205 0.205 5.71% FillPatchIterator::Initialize 41 0.1518 0.1751 0.1924 5.36% Amr::initialInit() 1 0.1893 0.1896 0.1898 5.29% Castro::initialize_do_advance() 10 0.1587 0.1735 0.1846 5.14% Amr::InitializeInit() 1 0.05867 0.104 0.1584 4.41% Amr::defBaseLevel() 1 0.05867 0.104 0.1584 4.41% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1323 0.1556 4.34% FillPatchSingleLevel 41 0.1127 0.1322 0.1555 4.33% Castro::estTimeStep() 21 0.02606 0.0891 0.141 3.93% Castro::initData() 1 0.04296 0.08756 0.1407 3.92% Amr::FinalizeInit() 1 0.03126 0.08561 0.1308 3.65% Castro::expand_state() 10 0.1014 0.1184 0.1301 3.62% Castro::clean_state() 62 0.1152 0.1191 0.1256 3.50% check_for_negative_density() 10 0.02694 0.0843 0.1199 3.34% FabArray::ParallelCopy() 41 0.07649 0.09403 0.118 3.29% Castro::computeInitialDt() 2 0.002549 0.05692 0.1023 2.85% Castro::do_old_sources() 10 0.0893 0.09314 0.09639 2.69% FabArray::setVal() 143 0.06369 0.07278 0.08679 2.42% Castro::initialize_advance() 10 0.06848 0.07579 0.08605 2.40% amrex::Copy() 193 0.06517 0.07629 0.08482 2.36% FabArray::ParallelCopy_finish() 41 0.03606 0.05421 0.08209 2.29% Castro::do_new_sources() 10 0.05937 0.06588 0.07549 2.10% Castro::computeTemp() 63 0.06682 0.07 0.07459 2.08% Castro::reset_internal_energy(MultiFab) 63 0.04738 0.0499 0.05323 1.48% Castro::reset_internal_energy(Fab) 1008 0.04708 0.0496 0.05293 1.47% Castro::normalize_species() 62 0.04127 0.04224 0.04397 1.23% StateDataPhysBCFunct::() 41 0.03507 0.03814 0.04158 1.16% StateData::FillBoundary(geom) 41 0.03499 0.03804 0.04148 1.16% FabArray::ParallelCopy_nowait() 41 0.03582 0.03975 0.04141 1.15% Castro::construct_new_source() 50 0.02857 0.03108 0.03505 0.98% Castro::finalize_do_advance() 10 0.01405 0.02388 0.03077 0.86% Gravity::interpolate_monopole_grav() 21 0.02859 0.02896 0.02949 0.82% Castro::post_init() 1 0.02806 0.02829 0.02858 0.80% Castro::construct_new_gravity_source() 10 0.02223 0.02475 0.0283 0.79% Amr::writePlotFile() 2 0.02513 0.02532 0.02566 0.71% Castro::post_timestep() 10 0.01586 0.01607 0.01642 0.46% VisMF::Write(FabArray) 2 0.01285 0.01367 0.01621 0.45% Castro::apply_source_to_state() 20 0.01093 0.01275 0.01352 0.38% FabArray::Saxpy() 20 0.01088 0.01271 0.01349 0.38% FabArray::setDomainBndry() 41 0.009054 0.0111 0.01224 0.34% Castro::Castro() 1 0.01016 0.01072 0.01176 0.33% Castro::check_for_nan() 20 0.009775 0.01064 0.01163 0.32% MultiFab::contains_nan() 20 0.009754 0.01061 0.01161 0.32% Castro::construct_old_source() 50 0.007159 0.00951 0.009944 0.28% Castro::construct_old_gravity_source() 10 0.007106 0.009439 0.009865 0.27% Castro::computeNewDt() 9 0.009619 0.009635 0.009645 0.27% Castro::enforce_min_density() 62 0.007341 0.007652 0.008049 0.22% Castro::initMFs() 1 0.00631 0.00688 0.007946 0.22% AmrLevel::AmrLevel(dm) 1 0.005308 0.005565 0.005978 0.17% StateData::define() 4 0.005292 0.005547 0.005959 0.17% Castro::swap_state_time_levels() 10 0.003166 0.004279 0.005001 0.14% Castro::finalize_advance() 10 0.002953 0.003667 0.004482 0.12% Castro::post_regrid() 1 0.001574 0.00171 0.001972 0.05% Castro::buildMetrics() 1 0.001593 0.001708 0.001901 0.05% Amr::InitAmr() 1 0.0002708 0.0003064 0.0004138 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.538e-05 0.0001251 0.000155 0.00% DistributionMapping::LeastUsedCPUs() 1 1.074e-05 0.0001188 0.0001474 0.00% Castro::enforce_consistent_e() 1 8.238e-05 8.929e-05 9.796e-05 0.00% FabArrayBase::getCPC() 41 7.138e-05 8.546e-05 9.557e-05 0.00% Amr::writeSmallPlotFile() 1 3.026e-05 5.237e-05 6.306e-05 0.00% Castro::enforce_speed_limit() 62 2.98e-05 3.169e-05 3.559e-05 0.00% FabArrayBase::CPC::define() 2 2.246e-05 2.605e-05 3.396e-05 0.00% Gravity::swapTimeLevels() 10 1.087e-05 1.269e-05 1.512e-05 0.00% Castro::retry_advance_ctu() 10 6.746e-06 9.869e-06 1.383e-05 0.00% Gravity::set_mass_offset() 10 9.251e-06 1.045e-05 1.228e-05 0.00% Castro::create_source_corrector() 10 7.108e-06 8.589e-06 1.082e-05 0.00% Amr::initSubcycle() 1 9.077e-06 1.003e-05 1.069e-05 0.00% Castro::FluxRegCrseInit 10 5.651e-06 7.69e-06 8.905e-06 0.00% Castro::FluxRegFineAdd() 10 2.149e-06 2.467e-06 2.856e-06 0.00% DistributionMapping::Distribute() 1 1.037e-06 1.242e-06 1.643e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-31-g435281069858) finalized