MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-33-gdda0d979ca2e) initialized Starting run at 05:36:17 UTC on 2023-08-21. Successfully read inputs file ... Castro git describe: 23.08-6-g41b0e2684 AMReX git describe: 23.08-33-gdda0d979c Microphysics git describe: 23.08-13-g01724c98 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014095707 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352262354 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348489261 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331981873 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329631088 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330534659 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.360253527 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310295232 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309667165 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310820397 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312587265 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009502496 seconds Ending run at 05:36:20 UTC on 2023-08-21. Run time = 3.527328082 Run time without initialization = 3.312055289 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.526 ... 3.527 ... 3.527 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2550 2.3135 2.3675 67.12% Gravity::make_radial_gravity() 21 0.3139 0.3211 0.332 9.41% check_for_negative_density() 10 0.02499 0.08388 0.1449 4.11% Castro::initData() 1 0.0467 0.09209 0.1442 4.09% Castro::estTimeStep() 21 0.03407 0.08716 0.1389 3.94% FabArray::ParallelCopy_finish() 41 0.03189 0.06198 0.1008 2.86% amrex::Copy() 193 0.0645 0.07696 0.08794 2.49% FabArray::setVal() 143 0.06161 0.0719 0.08631 2.45% Castro::reset_internal_energy(Fab) 1008 0.0472 0.04914 0.05169 1.47% Castro::normalize_species() 62 0.04131 0.04196 0.04247 1.20% FabArray::ParallelCopy_nowait() 41 0.03471 0.03991 0.0423 1.20% StateData::FillBoundary(geom) 41 0.03472 0.03671 0.03924 1.11% FillPatchIterator::Initialize 41 0.02613 0.03151 0.03798 1.08% Gravity::interpolate_monopole_grav() 21 0.02783 0.02802 0.02819 0.80% Castro::construct_new_gravity_source() 10 0.02155 0.02371 0.02564 0.73% Castro::initialize_do_advance() 10 0.01145 0.01768 0.02264 0.64% Castro::computeTemp() 63 0.01898 0.01994 0.02164 0.61% VisMF::Write(FabArray) 2 0.01247 0.01303 0.01519 0.43% FabArray::Saxpy() 20 0.01086 0.01269 0.01366 0.39% Castro::initialize_advance() 10 0.00411 0.0102 0.01344 0.38% FabArray::setDomainBndry() 41 0.008479 0.01093 0.0124 0.35% MultiFab::contains_nan() 20 0.009409 0.0106 0.01137 0.32% Castro::construct_old_gravity_source() 10 0.006868 0.009526 0.01031 0.29% Castro::initMFs() 1 0.006055 0.007977 0.009545 0.27% Amr::writePlotFile() 2 0.005875 0.008279 0.008859 0.25% StateData::define() 4 0.005169 0.006652 0.007828 0.22% Castro::enforce_min_density() 62 0.007054 0.007394 0.007795 0.22% Amr::coarseTimeStep() 10 0.002143 0.005171 0.007344 0.21% Castro::construct_new_source() 50 0.005663 0.006417 0.006859 0.19% main() 1 0.003439 0.004621 0.005151 0.15% Castro::swap_state_time_levels() 10 0.003069 0.004045 0.004272 0.12% Gravity::get_new_grav_vector() 11 0.002923 0.003477 0.003815 0.11% Gravity::get_old_grav_vector() 10 0.00169 0.001952 0.002365 0.07% Castro::buildMetrics() 1 0.001452 0.001885 0.002229 0.06% Castro::finalize_do_advance() 10 0.0005729 0.001075 0.001354 0.04% AmrLevel::FillPatch() 41 0.0007094 0.0008378 0.0009798 0.03% Amr::InitAmr() 1 0.0003047 0.0004266 0.0005092 0.01% Amr::timeStep() 10 0.0001623 0.0002359 0.0004566 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002916 0.0003223 0.0003768 0.01% DistributionMapping::LeastUsedCPUs() 1 7.437e-06 0.0001231 0.0002663 0.01% Castro::do_advance_ctu() 10 0.000163 0.0001827 0.0002152 0.01% Castro::clean_state() 62 0.0001487 0.000162 0.0001774 0.01% Castro::enforce_consistent_e() 1 8.17e-05 9.62e-05 0.0001406 0.00% FillPatchIterator::FillFromLevel0() 41 0.000107 0.0001151 0.0001316 0.00% Castro::finalize_advance() 10 8.38e-05 9.562e-05 0.0001131 0.00% StateDataPhysBCFunct::() 41 8.868e-05 9.721e-05 0.0001124 0.00% Castro::do_old_sources() 10 7.715e-05 9.222e-05 0.0001032 0.00% Castro::Castro() 1 5.825e-05 7.381e-05 8.746e-05 0.00% Castro::construct_old_source() 50 5.163e-05 7.034e-05 7.969e-05 0.00% FabArray::ParallelCopy() 41 6.785e-05 7.151e-05 7.968e-05 0.00% Castro::advance() 10 4.259e-05 5.783e-05 7.928e-05 0.00% FillPatchSingleLevel 41 6.008e-05 7.074e-05 7.816e-05 0.00% Castro::do_new_sources() 10 5.346e-05 6.51e-05 7.752e-05 0.00% Amr::writeSmallPlotFile() 1 2.922e-05 5.249e-05 6.548e-05 0.00% Amr::FinalizeInit() 1 3.903e-06 1.227e-05 6.499e-05 0.00% FabArrayBase::getCPC() 41 4.193e-05 4.803e-05 5.873e-05 0.00% Castro::construct_old_gravity() 10 4.447e-05 4.879e-05 5.851e-05 0.00% Castro::subcycle_advance_ctu() 10 4.148e-05 5.02e-05 5.6e-05 0.00% Castro::computeNewDt() 9 9.207e-06 2.376e-05 5.459e-05 0.00% Castro::construct_new_gravity() 10 3.611e-05 4.081e-05 5.328e-05 0.00% Castro::apply_source_to_state() 20 3.914e-05 4.465e-05 5.257e-05 0.00% Amr::defBaseLevel() 1 2.998e-05 3.92e-05 4.856e-05 0.00% Castro::post_timestep() 10 1.33e-05 2.12e-05 3.967e-05 0.00% Gravity::set_mass_offset() 10 8.41e-06 1.701e-05 3.589e-05 0.00% Castro::expand_state() 10 2.176e-05 2.419e-05 3.446e-05 0.00% FabArrayBase::CPC::define() 2 2.2e-05 2.568e-05 3.432e-05 0.00% Castro::enforce_speed_limit() 62 2.755e-05 3.018e-05 3.202e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.333e-05 1.957e-05 2.816e-05 0.00% Castro::check_for_nan() 20 2.036e-05 2.264e-05 2.742e-05 0.00% Gravity::swapTimeLevels() 10 1.108e-05 1.428e-05 1.931e-05 0.00% Amr::initSubcycle() 1 9.323e-06 1.315e-05 1.752e-05 0.00% Castro::computeInitialDt() 2 3.378e-06 5.285e-06 1.209e-05 0.00% Castro::create_source_corrector() 10 8.011e-06 9.001e-06 1.075e-05 0.00% Castro::retry_advance_ctu() 10 6.699e-06 7.625e-06 8.57e-06 0.00% Castro::FluxRegCrseInit 10 6.851e-06 7.78e-06 8.497e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.267e-06 5.446e-06 7.608e-06 0.00% Amr::InitializeInit() 1 2.062e-06 2.754e-06 5.609e-06 0.00% Castro::post_init() 1 3.076e-06 3.89e-06 5.276e-06 0.00% Castro::post_regrid() 1 1.878e-06 2.863e-06 4.327e-06 0.00% Castro::FluxRegFineAdd() 10 2.03e-06 2.26e-06 2.815e-06 0.00% Amr::init() 1 1.884e-06 2.373e-06 2.748e-06 0.00% Amr::initialInit() 1 1.52e-06 1.787e-06 2.275e-06 0.00% DistributionMapping::Distribute() 1 1.127e-06 1.348e-06 1.484e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.526 3.527 3.527 100.00% Amr::coarseTimeStep() 10 3.297 3.297 3.298 93.48% Amr::timeStep() 10 3.277 3.278 3.281 93.01% Castro::advance() 10 3.261 3.261 3.261 92.46% Castro::subcycle_advance_ctu() 10 3.17 3.183 3.192 90.50% Castro::do_advance_ctu() 10 3.17 3.183 3.192 90.50% Castro::construct_ctu_hydro_source() 10 2.413 2.418 2.421 68.63% Gravity::make_radial_gravity() 21 0.3301 0.3373 0.3452 9.78% AmrLevel::FillPatch() 41 0.1792 0.2112 0.2334 6.62% Gravity::get_new_grav_vector() 11 0.2199 0.2213 0.2227 6.31% Amr::init() 1 0.2146 0.2147 0.2148 6.09% FillPatchIterator::Initialize 41 0.1506 0.1815 0.2065 5.85% Castro::construct_old_gravity() 10 0.1922 0.1992 0.2059 5.84% Gravity::get_old_grav_vector() 10 0.1915 0.1984 0.2052 5.82% Amr::initialInit() 1 0.2001 0.2003 0.2005 5.68% Castro::construct_new_gravity() 10 0.1946 0.1955 0.1965 5.57% Castro::initialize_do_advance() 10 0.163 0.1781 0.1909 5.41% FillPatchIterator::FillFromLevel0() 41 0.1124 0.139 0.1719 4.87% FillPatchSingleLevel 41 0.1123 0.1389 0.1718 4.87% Amr::InitializeInit() 1 0.06638 0.1148 0.1706 4.84% Amr::defBaseLevel() 1 0.06637 0.1148 0.1706 4.84% Castro::initData() 1 0.05035 0.09615 0.1487 4.22% check_for_negative_density() 10 0.02499 0.08388 0.1449 4.11% Castro::estTimeStep() 21 0.03407 0.08716 0.1389 3.94% Castro::expand_state() 10 0.1041 0.1235 0.1378 3.91% FabArray::ParallelCopy() 41 0.07341 0.102 0.1356 3.85% Amr::FinalizeInit() 1 0.02957 0.08557 0.134 3.80% Castro::clean_state() 62 0.1154 0.1179 0.1225 3.47% Castro::computeInitialDt() 2 0.002564 0.05853 0.1069 3.03% FabArray::ParallelCopy_finish() 41 0.03189 0.06198 0.1008 2.86% Castro::do_old_sources() 10 0.09146 0.09652 0.1006 2.85% amrex::Copy() 193 0.0645 0.07696 0.08794 2.49% Castro::initialize_advance() 10 0.06502 0.07443 0.08748 2.48% FabArray::setVal() 143 0.06161 0.0719 0.08631 2.45% Castro::computeTemp() 63 0.06662 0.06941 0.07371 2.09% Castro::do_new_sources() 10 0.06005 0.06339 0.06826 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04754 0.04946 0.05207 1.48% Castro::reset_internal_energy(Fab) 1008 0.0472 0.04914 0.05169 1.47% Castro::normalize_species() 62 0.04131 0.04196 0.04247 1.20% FabArray::ParallelCopy_nowait() 41 0.03479 0.03998 0.04237 1.20% StateDataPhysBCFunct::() 41 0.03481 0.03681 0.03934 1.12% StateData::FillBoundary(geom) 41 0.03472 0.03671 0.03924 1.11% Castro::construct_new_source() 50 0.02721 0.03013 0.03249 0.92% Gravity::interpolate_monopole_grav() 21 0.02783 0.02802 0.02819 0.80% Castro::post_init() 1 0.02649 0.02671 0.02685 0.76% Castro::construct_new_gravity_source() 10 0.02155 0.02371 0.02564 0.73% Amr::writePlotFile() 2 0.02383 0.02396 0.02404 0.68% Castro::finalize_do_advance() 10 0.01213 0.01687 0.02075 0.59% Castro::post_timestep() 10 0.01563 0.01669 0.01959 0.56% VisMF::Write(FabArray) 2 0.01247 0.01303 0.01519 0.43% Castro::Castro() 1 0.008979 0.01176 0.01404 0.40% Castro::apply_source_to_state() 20 0.0109 0.01274 0.0137 0.39% FabArray::Saxpy() 20 0.01086 0.01269 0.01366 0.39% Castro::computeNewDt() 9 0.0115 0.01286 0.01322 0.37% FabArray::setDomainBndry() 41 0.008479 0.01093 0.0124 0.35% Castro::check_for_nan() 20 0.00943 0.01062 0.01139 0.32% MultiFab::contains_nan() 20 0.009409 0.0106 0.01137 0.32% Castro::construct_old_source() 50 0.00692 0.009596 0.01039 0.29% Castro::construct_old_gravity_source() 10 0.006868 0.009526 0.01031 0.29% Castro::initMFs() 1 0.006055 0.007977 0.009545 0.27% AmrLevel::AmrLevel(dm) 1 0.005183 0.006672 0.007856 0.22% StateData::define() 4 0.005169 0.006652 0.007828 0.22% Castro::enforce_min_density() 62 0.007054 0.007394 0.007795 0.22% Castro::swap_state_time_levels() 10 0.003069 0.004045 0.004272 0.12% Castro::finalize_advance() 10 0.00309 0.003312 0.003491 0.10% Castro::buildMetrics() 1 0.001562 0.002055 0.002453 0.07% Castro::post_regrid() 1 0.00155 0.001638 0.001844 0.05% Amr::InitAmr() 1 0.0003141 0.0004398 0.0005258 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.319e-05 0.0001299 0.0002752 0.01% DistributionMapping::LeastUsedCPUs() 1 7.437e-06 0.0001231 0.0002663 0.01% Castro::enforce_consistent_e() 1 8.17e-05 9.62e-05 0.0001406 0.00% FabArrayBase::getCPC() 41 6.392e-05 7.371e-05 8.184e-05 0.00% Amr::writeSmallPlotFile() 1 2.922e-05 5.249e-05 6.548e-05 0.00% Gravity::set_mass_offset() 10 8.41e-06 1.701e-05 3.589e-05 0.00% FabArrayBase::CPC::define() 2 2.2e-05 2.568e-05 3.432e-05 0.00% Castro::enforce_speed_limit() 62 2.755e-05 3.018e-05 3.202e-05 0.00% Gravity::swapTimeLevels() 10 1.108e-05 1.428e-05 1.931e-05 0.00% Amr::initSubcycle() 1 9.323e-06 1.315e-05 1.752e-05 0.00% Castro::create_source_corrector() 10 8.011e-06 9.001e-06 1.075e-05 0.00% Castro::retry_advance_ctu() 10 6.699e-06 7.625e-06 8.57e-06 0.00% Castro::FluxRegCrseInit 10 6.851e-06 7.78e-06 8.497e-06 0.00% Castro::FluxRegFineAdd() 10 2.03e-06 2.26e-06 2.815e-06 0.00% DistributionMapping::Distribute() 1 1.127e-06 1.348e-06 1.484e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-33-gdda0d979ca2e) finalized