MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-35-ge63308431a58) initialized Starting run at 05:35:56 UTC on 2023-08-22. Successfully read inputs file ... Castro git describe: 23.08-6-g41b0e2684 AMReX git describe: 23.08-35-ge63308431 Microphysics git describe: 23.08-14-g00c8a99c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014369007 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358845527 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352242159 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327844594 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328481716 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.327962405 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.35995311 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318709826 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311447418 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312185971 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313547982 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009443977 seconds Ending run at 05:36:00 UTC on 2023-08-22. Run time = 3.518211783 Run time without initialization = 3.326227743 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.517 ... 3.518 ... 3.518 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2580 2.3353 2.3824 67.72% Gravity::make_radial_gravity() 21 0.3155 0.3264 0.3456 9.82% check_for_negative_density() 10 0.03065 0.08267 0.1649 4.69% Castro::initData() 1 0.03865 0.07898 0.1284 3.65% Castro::estTimeStep() 21 0.03124 0.07834 0.1219 3.46% amrex::Copy() 193 0.0642 0.081 0.09737 2.77% FabArray::ParallelCopy_finish() 41 0.03528 0.05311 0.09234 2.62% FabArray::setVal() 143 0.06231 0.07143 0.07908 2.25% Castro::reset_internal_energy(Fab) 1008 0.04655 0.04827 0.05024 1.43% FabArray::ParallelCopy_nowait() 41 0.03301 0.0398 0.04226 1.20% Castro::normalize_species() 62 0.04132 0.04161 0.0422 1.20% StateData::FillBoundary(geom) 41 0.03333 0.03632 0.03871 1.10% FillPatchIterator::Initialize 41 0.02626 0.03139 0.03409 0.97% Gravity::interpolate_monopole_grav() 21 0.02763 0.02837 0.03003 0.85% Castro::construct_new_gravity_source() 10 0.02155 0.0238 0.02552 0.73% Castro::computeTemp() 63 0.01863 0.01943 0.02015 0.57% Castro::initialize_do_advance() 10 0.01111 0.01676 0.01799 0.51% VisMF::Write(FabArray) 2 0.01242 0.01298 0.01571 0.45% Castro::initialize_advance() 10 0.009022 0.01227 0.01544 0.44% FabArray::Saxpy() 20 0.0103 0.01255 0.01366 0.39% MultiFab::contains_nan() 20 0.01089 0.01176 0.01302 0.37% FabArray::setDomainBndry() 41 0.008878 0.01111 0.0125 0.36% Castro::construct_old_gravity_source() 10 0.006517 0.009417 0.01052 0.30% Amr::writePlotFile() 2 0.006006 0.008089 0.008609 0.24% Castro::initMFs() 1 0.006441 0.006711 0.008342 0.24% Castro::construct_new_source() 50 0.005554 0.006408 0.006826 0.19% Castro::enforce_min_density() 62 0.00566 0.006084 0.00656 0.19% StateData::define() 4 0.005255 0.005427 0.005937 0.17% main() 1 0.003867 0.004353 0.004887 0.14% Castro::swap_state_time_levels() 10 0.001971 0.004137 0.004481 0.13% Gravity::get_new_grav_vector() 11 0.002583 0.003449 0.003784 0.11% Amr::coarseTimeStep() 10 0.001162 0.001911 0.00268 0.08% Gravity::get_old_grav_vector() 10 0.001444 0.001915 0.002469 0.07% Castro::buildMetrics() 1 0.001497 0.001549 0.001732 0.05% Castro::finalize_do_advance() 10 0.0005992 0.001104 0.001444 0.04% AmrLevel::FillPatch() 41 0.0006723 0.0008597 0.001051 0.03% Amr::InitAmr() 1 0.0002698 0.0002954 0.0003964 0.01% Amr::timeStep() 10 0.0001833 0.0002506 0.0003649 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002715 0.0002832 0.0003073 0.01% Castro::do_advance_ctu() 10 0.0001525 0.0001708 0.0001962 0.01% Castro::clean_state() 62 0.000136 0.0001522 0.0001666 0.00% Castro::finalize_advance() 10 6.97e-05 9.291e-05 0.0001174 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001008 0.0001072 0.0001166 0.00% DistributionMapping::LeastUsedCPUs() 1 7.442e-06 9.791e-05 0.0001125 0.00% Castro::do_old_sources() 10 6.707e-05 9.034e-05 0.0001062 0.00% StateDataPhysBCFunct::() 41 7.683e-05 9.451e-05 0.000101 0.00% Castro::Castro() 1 5.681e-05 7.207e-05 9.828e-05 0.00% Castro::enforce_consistent_e() 1 7.695e-05 8.418e-05 9.01e-05 0.00% Castro::do_new_sources() 10 5.336e-05 6.573e-05 8.83e-05 0.00% Castro::construct_old_source() 50 4.156e-05 6.961e-05 8.336e-05 0.00% FabArray::ParallelCopy() 41 6.812e-05 7.252e-05 8.129e-05 0.00% Castro::advance() 10 3.241e-05 4.605e-05 7.236e-05 0.00% FillPatchSingleLevel 41 6.787e-05 7.067e-05 7.229e-05 0.00% Amr::writeSmallPlotFile() 1 2.759e-05 4.505e-05 7.03e-05 0.00% Amr::FinalizeInit() 1 4.701e-06 1.274e-05 6.652e-05 0.00% Castro::subcycle_advance_ctu() 10 3.901e-05 5.163e-05 6.264e-05 0.00% Amr::defBaseLevel() 1 4.448e-05 5.124e-05 5.875e-05 0.00% FabArrayBase::getCPC() 41 3.895e-05 4.643e-05 5.423e-05 0.00% Castro::construct_old_gravity() 10 4.286e-05 4.97e-05 5.419e-05 0.00% Castro::apply_source_to_state() 20 3.126e-05 3.974e-05 4.561e-05 0.00% Castro::construct_new_gravity() 10 3.49e-05 3.98e-05 4.348e-05 0.00% FabArrayBase::CPC::define() 2 2.109e-05 2.476e-05 3.658e-05 0.00% Castro::enforce_speed_limit() 62 2.635e-05 2.97e-05 3.304e-05 0.00% Castro::expand_state() 10 1.745e-05 2.341e-05 2.869e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.253e-05 1.534e-05 2.25e-05 0.00% Castro::post_timestep() 10 1.28e-05 1.552e-05 2.24e-05 0.00% Castro::check_for_nan() 20 1.903e-05 2.078e-05 2.208e-05 0.00% Castro::computeNewDt() 9 9.491e-06 1.196e-05 2.031e-05 0.00% Gravity::swapTimeLevels() 10 8.21e-06 1.413e-05 1.637e-05 0.00% Gravity::set_mass_offset() 10 9.131e-06 1.078e-05 1.3e-05 0.00% Amr::initSubcycle() 1 8.755e-06 9.254e-06 1.01e-05 0.00% Castro::create_source_corrector() 10 7.439e-06 8.562e-06 9.779e-06 0.00% Castro::FluxRegCrseInit 10 5.577e-06 7.238e-06 9.721e-06 0.00% Amr::initialInit() 1 1.281e-06 2.618e-06 9.251e-06 0.00% Castro::retry_advance_ctu() 10 6.502e-06 7.373e-06 8.816e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.505e-06 4.648e-06 6.61e-06 0.00% Castro::computeInitialDt() 2 3.911e-06 4.696e-06 5.766e-06 0.00% Amr::InitializeInit() 1 1.768e-06 2.375e-06 4.816e-06 0.00% Castro::post_init() 1 3.484e-06 3.844e-06 4.737e-06 0.00% Castro::post_regrid() 1 2.022e-06 3.233e-06 4.548e-06 0.00% Castro::FluxRegFineAdd() 10 2.143e-06 2.458e-06 2.89e-06 0.00% Amr::init() 1 1.703e-06 2.24e-06 2.798e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.031e-06 1.245e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.517 3.518 3.518 100.00% Amr::coarseTimeStep() 10 3.312 3.312 3.312 94.14% Amr::timeStep() 10 3.299 3.3 3.3 93.81% Castro::advance() 10 3.283 3.283 3.284 93.33% Castro::subcycle_advance_ctu() 10 3.202 3.206 3.217 91.45% Castro::do_advance_ctu() 10 3.202 3.206 3.217 91.45% Castro::construct_ctu_hydro_source() 10 2.434 2.439 2.444 69.45% Gravity::make_radial_gravity() 21 0.3352 0.3435 0.3602 10.24% Castro::construct_old_gravity() 10 0.2016 0.2083 0.222 6.31% Gravity::get_old_grav_vector() 10 0.201 0.2077 0.2215 6.30% Gravity::get_new_grav_vector() 11 0.2178 0.2192 0.2207 6.27% AmrLevel::FillPatch() 41 0.1827 0.2026 0.2181 6.20% Castro::construct_new_gravity() 10 0.195 0.1955 0.1966 5.59% FillPatchIterator::Initialize 41 0.1525 0.1722 0.1942 5.52% Amr::init() 1 0.1914 0.1915 0.1916 5.44% Amr::initialInit() 1 0.1769 0.1772 0.1774 5.04% Castro::initialize_do_advance() 10 0.1581 0.1642 0.171 4.86% check_for_negative_density() 10 0.03065 0.08267 0.1649 4.69% FillPatchIterator::FillFromLevel0() 41 0.1143 0.1297 0.1591 4.52% FillPatchSingleLevel 41 0.1142 0.1295 0.159 4.52% Amr::InitializeInit() 1 0.05907 0.0996 0.1499 4.26% Amr::defBaseLevel() 1 0.05907 0.0996 0.1499 4.26% Castro::initData() 1 0.04271 0.08295 0.1318 3.75% FabArray::ParallelCopy() 41 0.07669 0.09306 0.1255 3.57% Castro::estTimeStep() 21 0.03124 0.07834 0.1219 3.46% Castro::clean_state() 62 0.1123 0.115 0.1182 3.36% Amr::FinalizeInit() 1 0.02736 0.0776 0.1182 3.36% Castro::expand_state() 10 0.1018 0.1101 0.1168 3.32% Castro::do_old_sources() 10 0.09323 0.09981 0.1052 2.99% amrex::Copy() 193 0.0642 0.081 0.09737 2.77% Castro::computeInitialDt() 2 0.002103 0.05239 0.09294 2.64% FabArray::ParallelCopy_finish() 41 0.03528 0.05311 0.09234 2.62% FabArray::setVal() 143 0.06231 0.07143 0.07908 2.25% Castro::initialize_advance() 10 0.0622 0.07409 0.07806 2.22% Castro::computeTemp() 63 0.06599 0.06798 0.07052 2.00% Castro::do_new_sources() 10 0.05929 0.0631 0.06841 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04683 0.04856 0.05055 1.44% Castro::reset_internal_energy(Fab) 1008 0.04655 0.04827 0.05024 1.43% FabArray::ParallelCopy_nowait() 41 0.03307 0.03988 0.04234 1.20% Castro::normalize_species() 62 0.04132 0.04161 0.0422 1.20% StateDataPhysBCFunct::() 41 0.03341 0.03642 0.03881 1.10% StateData::FillBoundary(geom) 41 0.03333 0.03632 0.03871 1.10% Castro::construct_new_source() 50 0.02711 0.03021 0.03235 0.92% Gravity::interpolate_monopole_grav() 21 0.02763 0.02837 0.03003 0.85% Castro::construct_new_gravity_source() 10 0.02155 0.0238 0.02552 0.73% Castro::post_init() 1 0.02448 0.02471 0.02492 0.71% Amr::writePlotFile() 2 0.02368 0.02386 0.02405 0.68% Castro::finalize_do_advance() 10 0.01204 0.01771 0.02159 0.61% Castro::post_timestep() 10 0.01527 0.01586 0.01648 0.47% VisMF::Write(FabArray) 2 0.01242 0.01298 0.01571 0.45% Castro::apply_source_to_state() 20 0.01033 0.01259 0.0137 0.39% FabArray::Saxpy() 20 0.0103 0.01255 0.01366 0.39% Castro::check_for_nan() 20 0.0109 0.01178 0.01304 0.37% MultiFab::contains_nan() 20 0.01089 0.01176 0.01302 0.37% FabArray::setDomainBndry() 41 0.008878 0.01111 0.0125 0.36% Castro::Castro() 1 0.01087 0.01105 0.01197 0.34% Castro::construct_old_source() 50 0.006558 0.009487 0.0106 0.30% Castro::construct_old_gravity_source() 10 0.006517 0.009417 0.01052 0.30% Castro::computeNewDt() 9 0.009351 0.009359 0.009363 0.27% Castro::initMFs() 1 0.006441 0.006711 0.008342 0.24% Castro::enforce_min_density() 62 0.00566 0.006084 0.00656 0.19% AmrLevel::AmrLevel(dm) 1 0.005269 0.005442 0.005951 0.17% StateData::define() 4 0.005255 0.005427 0.005937 0.17% Castro::swap_state_time_levels() 10 0.001971 0.004137 0.004481 0.13% Castro::finalize_advance() 10 0.003073 0.003308 0.003535 0.10% Castro::buildMetrics() 1 0.001639 0.001684 0.001878 0.05% Castro::post_regrid() 1 0.001506 0.001579 0.001631 0.05% Amr::InitAmr() 1 0.0002795 0.0003046 0.0004051 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.195e-05 0.0001036 0.0001194 0.00% DistributionMapping::LeastUsedCPUs() 1 7.442e-06 9.791e-05 0.0001125 0.00% Castro::enforce_consistent_e() 1 7.695e-05 8.418e-05 9.01e-05 0.00% FabArrayBase::getCPC() 41 6.103e-05 7.12e-05 8.373e-05 0.00% Amr::writeSmallPlotFile() 1 2.759e-05 4.505e-05 7.03e-05 0.00% FabArrayBase::CPC::define() 2 2.109e-05 2.476e-05 3.658e-05 0.00% Castro::enforce_speed_limit() 62 2.635e-05 2.97e-05 3.304e-05 0.00% Gravity::swapTimeLevels() 10 8.21e-06 1.413e-05 1.637e-05 0.00% Gravity::set_mass_offset() 10 9.131e-06 1.078e-05 1.3e-05 0.00% Amr::initSubcycle() 1 8.755e-06 9.254e-06 1.01e-05 0.00% Castro::create_source_corrector() 10 7.439e-06 8.562e-06 9.779e-06 0.00% Castro::FluxRegCrseInit 10 5.577e-06 7.238e-06 9.721e-06 0.00% Castro::retry_advance_ctu() 10 6.502e-06 7.373e-06 8.816e-06 0.00% Castro::FluxRegFineAdd() 10 2.143e-06 2.458e-06 2.89e-06 0.00% DistributionMapping::Distribute() 1 9.07e-07 1.031e-06 1.245e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-35-ge63308431a58) finalized