MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-40-gd4d0e9031d03) initialized Starting run at 05:22:34 UTC on 2023-08-23. Successfully read inputs file ... Castro git describe: 23.08-6-g41b0e2684 AMReX git describe: 23.08-40-gd4d0e9031 Microphysics git describe: 23.08-15-gced7cc41 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014076603 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366290962 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340672747 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.371326046 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334124983 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355531408 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345562376 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31422083 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312709168 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314617139 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314118762 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009443122 seconds Ending run at 05:22:38 UTC on 2023-08-23. Run time = 3.566143763 Run time without initialization = 3.383435671 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.566 ... 3.566 ... 3.566 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3142 2.3584 2.4234 67.95% Gravity::make_radial_gravity() 21 0.3184 0.3249 0.3363 9.43% check_for_negative_density() 10 0.03273 0.09943 0.1478 4.15% Castro::initData() 1 0.03962 0.07832 0.1176 3.30% Castro::estTimeStep() 21 0.02997 0.07496 0.1161 3.26% FabArray::ParallelCopy_finish() 41 0.03456 0.05962 0.09062 2.54% amrex::Copy() 193 0.06779 0.07943 0.0888 2.49% FabArray::setVal() 143 0.06255 0.07223 0.08624 2.42% Castro::reset_internal_energy(Fab) 1008 0.04708 0.04845 0.05019 1.41% Castro::normalize_species() 62 0.0409 0.04212 0.04366 1.22% FabArray::ParallelCopy_nowait() 41 0.03416 0.04071 0.04268 1.20% StateData::FillBoundary(geom) 41 0.03537 0.03665 0.03882 1.09% FillPatchIterator::Initialize 41 0.0268 0.0335 0.03764 1.06% Gravity::interpolate_monopole_grav() 21 0.0281 0.02885 0.03075 0.86% Castro::construct_new_gravity_source() 10 0.02227 0.02532 0.02979 0.84% Castro::initialize_do_advance() 10 0.01134 0.01788 0.0218 0.61% Castro::computeTemp() 63 0.01721 0.01942 0.02041 0.57% VisMF::Write(FabArray) 2 0.01153 0.01248 0.01489 0.42% Castro::initialize_advance() 10 0.008257 0.01123 0.01472 0.41% FabArray::Saxpy() 20 0.01067 0.01305 0.01416 0.40% MultiFab::contains_nan() 20 0.01099 0.01168 0.01263 0.35% FabArray::setDomainBndry() 41 0.008958 0.01159 0.01256 0.35% Amr::writePlotFile() 2 0.006074 0.008719 0.01063 0.30% Castro::construct_old_gravity_source() 10 0.006889 0.009391 0.009981 0.28% StateData::define() 4 0.005165 0.006069 0.007959 0.22% Castro::initMFs() 1 0.006246 0.006773 0.007572 0.21% Castro::construct_new_source() 50 0.005813 0.00631 0.007126 0.20% Castro::enforce_min_density() 62 0.005656 0.005996 0.006406 0.18% Castro::swap_state_time_levels() 10 0.002988 0.004036 0.004378 0.12% main() 1 0.003962 0.004153 0.004237 0.12% Gravity::get_new_grav_vector() 11 0.002742 0.003536 0.004082 0.11% Amr::coarseTimeStep() 10 0.0008321 0.002422 0.003645 0.10% Castro::buildMetrics() 1 0.001478 0.001712 0.002576 0.07% Gravity::get_old_grav_vector() 10 0.001418 0.002013 0.002399 0.07% Castro::finalize_do_advance() 10 0.0004111 0.001055 0.001367 0.04% AmrLevel::FillPatch() 41 0.0006305 0.0009759 0.00126 0.04% Amr::InitAmr() 1 0.0002738 0.0003452 0.0004971 0.01% Amr::timeStep() 10 0.0001779 0.0002326 0.0003747 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002771 0.0002958 0.0003253 0.01% DistributionMapping::LeastUsedCPUs() 1 6.072e-06 0.0001741 0.0002512 0.01% Castro::do_advance_ctu() 10 0.0001295 0.0001807 0.0002159 0.01% Castro::clean_state() 62 0.0001424 0.0001513 0.0001622 0.00% FillPatchIterator::FillFromLevel0() 41 9.31e-05 0.0001073 0.0001228 0.00% Castro::finalize_advance() 10 9.386e-05 0.0001021 0.0001133 0.00% Castro::do_old_sources() 10 6.771e-05 9.286e-05 0.0001078 0.00% StateDataPhysBCFunct::() 41 8.996e-05 9.901e-05 0.0001045 0.00% Castro::enforce_consistent_e() 1 8.069e-05 8.397e-05 9.313e-05 0.00% FabArray::ParallelCopy() 41 6.548e-05 7.425e-05 8.457e-05 0.00% Castro::construct_old_source() 50 4.444e-05 6.847e-05 8.07e-05 0.00% Amr::FinalizeInit() 1 3.866e-06 1.384e-05 7.732e-05 0.00% Castro::do_new_sources() 10 4.832e-05 6.243e-05 7.632e-05 0.00% Castro::Castro() 1 5.062e-05 6.071e-05 7.581e-05 0.00% FillPatchSingleLevel 41 5.432e-05 6.165e-05 6.931e-05 0.00% FabArrayBase::getCPC() 41 4.346e-05 5.125e-05 6.384e-05 0.00% Amr::writeSmallPlotFile() 1 2.942e-05 5.167e-05 6.324e-05 0.00% Castro::apply_source_to_state() 20 3.774e-05 4.637e-05 5.521e-05 0.00% Castro::construct_old_gravity() 10 3.662e-05 4.556e-05 5.365e-05 0.00% Amr::defBaseLevel() 1 3.159e-05 4.212e-05 5.21e-05 0.00% Castro::subcycle_advance_ctu() 10 3.859e-05 4.813e-05 5.206e-05 0.00% Castro::construct_new_gravity() 10 3.628e-05 4.158e-05 4.985e-05 0.00% Castro::advance() 10 3.828e-05 4.192e-05 4.645e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.581e-05 2.311e-05 3.728e-05 0.00% Castro::enforce_speed_limit() 62 2.832e-05 3.161e-05 3.48e-05 0.00% FabArrayBase::CPC::define() 2 2.032e-05 2.528e-05 3.382e-05 0.00% Castro::expand_state() 10 2.025e-05 2.492e-05 3.032e-05 0.00% Castro::check_for_nan() 20 1.862e-05 2.082e-05 2.288e-05 0.00% Amr::initSubcycle() 1 8.775e-06 1.114e-05 1.695e-05 0.00% Castro::computeNewDt() 9 8.598e-06 1.182e-05 1.606e-05 0.00% Castro::post_timestep() 10 1.332e-05 1.49e-05 1.596e-05 0.00% Gravity::swapTimeLevels() 10 1.163e-05 1.336e-05 1.548e-05 0.00% Amr::init() 1 1.816e-06 3.786e-06 1.405e-05 0.00% Gravity::set_mass_offset() 10 8.327e-06 1.08e-05 1.345e-05 0.00% Castro::create_source_corrector() 10 7.555e-06 8.866e-06 1.074e-05 0.00% Amr::InitializeInit() 1 1.747e-06 3.23e-06 1.051e-05 0.00% Castro::FluxRegCrseInit 10 7.246e-06 8.167e-06 9.046e-06 0.00% Castro::retry_advance_ctu() 10 6.727e-06 7.253e-06 8.13e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.068e-06 5.272e-06 6.648e-06 0.00% Castro::computeInitialDt() 2 3.608e-06 4.607e-06 5.264e-06 0.00% Castro::post_regrid() 1 1.763e-06 3.3e-06 4.429e-06 0.00% Castro::post_init() 1 3.034e-06 3.344e-06 3.727e-06 0.00% Castro::FluxRegFineAdd() 10 1.983e-06 2.164e-06 2.301e-06 0.00% Amr::initialInit() 1 1.259e-06 1.545e-06 1.998e-06 0.00% DistributionMapping::Distribute() 1 9.82e-07 1.352e-06 1.674e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.566 3.566 3.566 100.00% Amr::coarseTimeStep() 10 3.37 3.37 3.37 94.49% Amr::timeStep() 10 3.356 3.357 3.359 94.18% Castro::advance() 10 3.34 3.341 3.342 93.71% Castro::subcycle_advance_ctu() 10 3.252 3.263 3.269 91.68% Castro::do_advance_ctu() 10 3.252 3.263 3.269 91.68% Castro::construct_ctu_hydro_source() 10 2.477 2.479 2.483 69.63% Gravity::make_radial_gravity() 21 0.3362 0.3423 0.3529 9.90% Gravity::get_new_grav_vector() 11 0.2297 0.2312 0.2326 6.52% AmrLevel::FillPatch() 41 0.1971 0.2137 0.2276 6.38% Castro::construct_old_gravity() 10 0.1924 0.1984 0.207 5.81% Gravity::get_old_grav_vector() 10 0.1917 0.1976 0.2065 5.79% Castro::construct_new_gravity() 10 0.2046 0.2054 0.2059 5.77% FillPatchIterator::Initialize 41 0.1627 0.1825 0.1965 5.51% Castro::initialize_do_advance() 10 0.169 0.1771 0.1879 5.27% Amr::init() 1 0.182 0.1822 0.1823 5.11% Amr::initialInit() 1 0.1673 0.1678 0.1681 4.71% FillPatchIterator::FillFromLevel0() 41 0.1126 0.1374 0.1607 4.51% FillPatchSingleLevel 41 0.1125 0.1373 0.1606 4.50% check_for_negative_density() 10 0.03273 0.09943 0.1478 4.15% Amr::InitializeInit() 1 0.05999 0.09872 0.1383 3.88% Amr::defBaseLevel() 1 0.05998 0.09871 0.1383 3.88% Castro::expand_state() 10 0.1103 0.1222 0.1334 3.74% FabArray::ParallelCopy() 41 0.07663 0.1005 0.1249 3.50% Castro::initData() 1 0.0432 0.08206 0.1212 3.40% Castro::clean_state() 62 0.112 0.1155 0.1197 3.36% Castro::estTimeStep() 21 0.02997 0.07496 0.1161 3.26% Amr::FinalizeInit() 1 0.02974 0.06912 0.108 3.03% Castro::do_old_sources() 10 0.09207 0.09458 0.09745 2.73% FabArray::ParallelCopy_finish() 41 0.03456 0.05962 0.09062 2.54% amrex::Copy() 193 0.06779 0.07943 0.0888 2.49% FabArray::setVal() 143 0.06255 0.07223 0.08624 2.42% Castro::initialize_advance() 10 0.06808 0.07459 0.08506 2.39% Castro::computeInitialDt() 2 0.002192 0.04176 0.08044 2.26% Castro::do_new_sources() 10 0.05901 0.06722 0.07891 2.21% Castro::computeTemp() 63 0.06471 0.06816 0.07091 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04737 0.04875 0.0505 1.42% Castro::reset_internal_energy(Fab) 1008 0.04708 0.04845 0.05019 1.41% Castro::normalize_species() 62 0.0409 0.04212 0.04366 1.22% FabArray::ParallelCopy_nowait() 41 0.03424 0.04078 0.04276 1.20% StateDataPhysBCFunct::() 41 0.03546 0.03675 0.03892 1.09% StateData::FillBoundary(geom) 41 0.03537 0.03665 0.03882 1.09% Castro::construct_new_source() 50 0.0285 0.03163 0.03617 1.01% Castro::finalize_do_advance() 10 0.01262 0.02504 0.03395 0.95% Gravity::interpolate_monopole_grav() 21 0.0281 0.02885 0.03075 0.86% Castro::construct_new_gravity_source() 10 0.02227 0.02532 0.02979 0.84% Castro::post_init() 1 0.0264 0.02685 0.02713 0.76% Amr::writePlotFile() 2 0.0237 0.02388 0.02423 0.68% Castro::post_timestep() 10 0.01516 0.01576 0.01652 0.46% VisMF::Write(FabArray) 2 0.01153 0.01248 0.01489 0.42% Castro::apply_source_to_state() 20 0.01072 0.01309 0.01422 0.40% FabArray::Saxpy() 20 0.01067 0.01305 0.01416 0.40% Castro::check_for_nan() 20 0.01101 0.0117 0.01265 0.35% MultiFab::contains_nan() 20 0.01099 0.01168 0.01263 0.35% FabArray::setDomainBndry() 41 0.008958 0.01159 0.01256 0.35% Castro::Castro() 1 0.009793 0.01034 0.01148 0.32% Castro::construct_old_source() 50 0.006933 0.00946 0.01006 0.28% Castro::construct_old_gravity_source() 10 0.006889 0.009391 0.009981 0.28% Castro::computeNewDt() 9 0.009223 0.009231 0.009242 0.26% AmrLevel::AmrLevel(dm) 1 0.005183 0.006092 0.007993 0.22% StateData::define() 4 0.005165 0.006069 0.007959 0.22% Castro::initMFs() 1 0.006246 0.006773 0.007572 0.21% Castro::enforce_min_density() 62 0.005656 0.005996 0.006406 0.18% Castro::finalize_advance() 10 0.002943 0.003685 0.004434 0.12% Castro::swap_state_time_levels() 10 0.002988 0.004036 0.004378 0.12% Castro::buildMetrics() 1 0.001608 0.001868 0.002811 0.08% Castro::post_regrid() 1 0.001592 0.001673 0.001778 0.05% Amr::InitAmr() 1 0.000283 0.0003563 0.000514 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.186e-05 0.0001807 0.0002594 0.01% DistributionMapping::LeastUsedCPUs() 1 6.072e-06 0.0001741 0.0002512 0.01% Castro::enforce_consistent_e() 1 8.069e-05 8.397e-05 9.313e-05 0.00% FabArrayBase::getCPC() 41 6.932e-05 7.653e-05 8.416e-05 0.00% Amr::writeSmallPlotFile() 1 2.942e-05 5.167e-05 6.324e-05 0.00% Castro::enforce_speed_limit() 62 2.832e-05 3.161e-05 3.48e-05 0.00% FabArrayBase::CPC::define() 2 2.032e-05 2.528e-05 3.382e-05 0.00% Amr::initSubcycle() 1 8.775e-06 1.114e-05 1.695e-05 0.00% Gravity::swapTimeLevels() 10 1.163e-05 1.336e-05 1.548e-05 0.00% Gravity::set_mass_offset() 10 8.327e-06 1.08e-05 1.345e-05 0.00% Castro::create_source_corrector() 10 7.555e-06 8.866e-06 1.074e-05 0.00% Castro::FluxRegCrseInit 10 7.246e-06 8.167e-06 9.046e-06 0.00% Castro::retry_advance_ctu() 10 6.727e-06 7.253e-06 8.13e-06 0.00% Castro::FluxRegFineAdd() 10 1.983e-06 2.164e-06 2.301e-06 0.00% DistributionMapping::Distribute() 1 9.82e-07 1.352e-06 1.674e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 34 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-40-gd4d0e9031d03) finalized