MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-40-gd4d0e9031d03) initialized Starting run at 05:20:51 UTC on 2023-08-24. Successfully read inputs file ... Castro git describe: 23.08-6-g41b0e2684 AMReX git describe: 23.08-40-gd4d0e9031 Microphysics git describe: 23.08-15-gced7cc41 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014423792 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362399774 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355716791 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335826611 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328356853 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.326896485 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.360907486 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316833183 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313544298 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314442915 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314615001 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009767948 seconds Ending run at 05:20:55 UTC on 2023-08-24. Run time = 3.525318628 Run time without initialization = 3.344547939 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.524 ... 3.525 ... 3.525 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2791 2.3302 2.3930 67.88% Gravity::make_radial_gravity() 21 0.3301 0.3465 0.3552 10.08% check_for_negative_density() 10 0.01789 0.08221 0.1339 3.80% Castro::initData() 1 0.04036 0.07731 0.1151 3.27% Castro::estTimeStep() 21 0.03099 0.07142 0.1048 2.97% amrex::Copy() 193 0.06629 0.07905 0.08948 2.54% FabArray::ParallelCopy_finish() 41 0.03806 0.05178 0.08252 2.34% FabArray::setVal() 143 0.06603 0.07198 0.08052 2.28% Castro::reset_internal_energy(Fab) 1008 0.04656 0.0487 0.0525 1.49% Castro::normalize_species() 62 0.04084 0.04236 0.04795 1.36% FabArray::ParallelCopy_nowait() 41 0.03436 0.03951 0.0415 1.18% StateData::FillBoundary(geom) 41 0.0341 0.03723 0.03987 1.13% FillPatchIterator::Initialize 41 0.02747 0.03136 0.03393 0.96% Gravity::interpolate_monopole_grav() 21 0.02776 0.02819 0.02896 0.82% Castro::construct_new_gravity_source() 10 0.02245 0.02435 0.02874 0.82% Castro::computeTemp() 63 0.01732 0.01957 0.02214 0.63% Castro::initialize_do_advance() 10 0.01216 0.0165 0.01777 0.50% VisMF::Write(FabArray) 2 0.01276 0.01321 0.01563 0.44% Castro::initialize_advance() 10 0.009554 0.0122 0.01554 0.44% MultiFab::contains_nan() 20 0.01047 0.01212 0.01484 0.42% FabArray::setDomainBndry() 41 0.009043 0.01152 0.01327 0.38% FabArray::Saxpy() 20 0.01036 0.0124 0.01321 0.37% Castro::construct_old_gravity_source() 10 0.006739 0.009426 0.01009 0.29% Amr::writePlotFile() 2 0.005939 0.008589 0.009204 0.26% Castro::initMFs() 1 0.006227 0.006422 0.007255 0.21% Castro::construct_new_source() 50 0.005877 0.006353 0.006685 0.19% Castro::enforce_min_density() 62 0.005721 0.006114 0.00645 0.18% StateData::define() 4 0.005111 0.00527 0.005766 0.16% main() 1 0.003323 0.003965 0.004449 0.13% Castro::swap_state_time_levels() 10 0.003157 0.004111 0.004356 0.12% Amr::coarseTimeStep() 10 0.001592 0.003005 0.00389 0.11% Gravity::get_new_grav_vector() 11 0.002902 0.003428 0.00379 0.11% Gravity::get_old_grav_vector() 10 0.001603 0.002167 0.00375 0.11% Castro::buildMetrics() 1 0.001465 0.001508 0.001684 0.05% Castro::finalize_do_advance() 10 0.0005023 0.001166 0.001467 0.04% AmrLevel::FillPatch() 41 0.0008112 0.0008999 0.0009369 0.03% Amr::InitAmr() 1 0.0002723 0.0002959 0.0004074 0.01% Amr::timeStep() 10 0.000189 0.000238 0.0004022 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000276 0.0003019 0.0003518 0.01% Castro::do_advance_ctu() 10 0.0001552 0.0001887 0.0002242 0.01% Castro::clean_state() 62 0.0001448 0.0001636 0.0001823 0.01% DistributionMapping::LeastUsedCPUs() 1 7.418e-06 0.0001183 0.0001383 0.00% FillPatchIterator::FillFromLevel0() 41 9.433e-05 0.0001127 0.0001335 0.00% Castro::finalize_advance() 10 9.372e-05 0.0001139 0.000127 0.00% StateDataPhysBCFunct::() 41 9.433e-05 0.0001068 0.000126 0.00% Castro::do_old_sources() 10 8.239e-05 9.421e-05 0.0001059 0.00% Castro::Castro() 1 5.21e-05 8.525e-05 9.803e-05 0.00% Castro::enforce_consistent_e() 1 8.095e-05 8.66e-05 9.331e-05 0.00% FabArray::ParallelCopy() 41 6.463e-05 7.311e-05 9.053e-05 0.00% Castro::construct_old_source() 50 5.784e-05 7.037e-05 8.63e-05 0.00% FillPatchSingleLevel 41 5.88e-05 6.62e-05 7.42e-05 0.00% Amr::FinalizeInit() 1 3.926e-06 1.319e-05 7.031e-05 0.00% Castro::do_new_sources() 10 5.304e-05 6.032e-05 6.952e-05 0.00% Castro::subcycle_advance_ctu() 10 4.806e-05 5.669e-05 6.915e-05 0.00% Castro::construct_old_gravity() 10 3.858e-05 5.037e-05 6.618e-05 0.00% FabArrayBase::getCPC() 41 4.481e-05 5.349e-05 6.556e-05 0.00% Amr::writeSmallPlotFile() 1 2.875e-05 5.335e-05 6.151e-05 0.00% Castro::apply_source_to_state() 20 4.131e-05 4.579e-05 6.118e-05 0.00% Castro::advance() 10 4.057e-05 4.788e-05 5.324e-05 0.00% Amr::defBaseLevel() 1 2.774e-05 4.067e-05 5.064e-05 0.00% Castro::construct_new_gravity() 10 3.268e-05 4.002e-05 4.896e-05 0.00% Castro::enforce_speed_limit() 62 2.762e-05 3.116e-05 3.682e-05 0.00% Castro::create_source_corrector() 10 7.274e-06 1.169e-05 3.27e-05 0.00% Castro::expand_state() 10 1.951e-05 2.534e-05 3.111e-05 0.00% Castro::check_for_nan() 20 1.948e-05 2.224e-05 2.866e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.813e-05 2.344e-05 2.844e-05 0.00% FabArrayBase::CPC::define() 2 2.071e-05 2.421e-05 2.701e-05 0.00% Castro::computeNewDt() 9 1.083e-05 1.226e-05 1.673e-05 0.00% Gravity::swapTimeLevels() 10 1.2e-05 1.43e-05 1.661e-05 0.00% Castro::post_timestep() 10 1.308e-05 1.495e-05 1.59e-05 0.00% Castro::retry_advance_ctu() 10 6.494e-06 8.278e-06 1.376e-05 0.00% Gravity::set_mass_offset() 10 9.836e-06 1.098e-05 1.247e-05 0.00% Amr::initSubcycle() 1 9.078e-06 9.528e-06 1.021e-05 0.00% Castro::FluxRegCrseInit 10 7.2e-06 7.793e-06 8.714e-06 0.00% Amr::initialInit() 1 1.237e-06 2.653e-06 8.524e-06 0.00% Amr::init() 1 1.81e-06 3.577e-06 8.467e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.712e-06 4.856e-06 7.314e-06 0.00% Castro::computeInitialDt() 2 3.673e-06 4.659e-06 5.678e-06 0.00% Amr::InitializeInit() 1 2.031e-06 2.686e-06 5.294e-06 0.00% Castro::post_regrid() 1 1.819e-06 3.411e-06 4.855e-06 0.00% Castro::post_init() 1 2.984e-06 3.911e-06 4.38e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.403e-06 2.986e-06 0.00% DistributionMapping::Distribute() 1 1.005e-06 1.178e-06 1.477e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.524 3.525 3.525 100.00% Amr::coarseTimeStep() 10 3.33 3.33 3.33 94.47% Amr::timeStep() 10 3.315 3.316 3.318 94.11% Castro::advance() 10 3.3 3.3 3.301 93.63% Castro::subcycle_advance_ctu() 10 3.219 3.222 3.227 91.52% Castro::do_advance_ctu() 10 3.219 3.222 3.227 91.52% Castro::construct_ctu_hydro_source() 10 2.431 2.434 2.436 69.10% Gravity::make_radial_gravity() 21 0.3471 0.3629 0.3712 10.53% Gravity::get_new_grav_vector() 11 0.2316 0.2331 0.2342 6.64% Castro::construct_old_gravity() 10 0.2021 0.2131 0.2206 6.26% Gravity::get_old_grav_vector() 10 0.201 0.2124 0.2199 6.24% AmrLevel::FillPatch() 41 0.1764 0.2027 0.2154 6.11% Castro::construct_new_gravity() 10 0.2061 0.2068 0.2073 5.88% FillPatchIterator::Initialize 41 0.1479 0.1718 0.1909 5.41% Amr::init() 1 0.1802 0.1803 0.1803 5.12% Castro::initialize_do_advance() 10 0.1573 0.1673 0.1753 4.97% Amr::initialInit() 1 0.1652 0.1656 0.1657 4.70% FillPatchIterator::FillFromLevel0() 41 0.1109 0.129 0.1536 4.36% FillPatchSingleLevel 41 0.1108 0.1288 0.1535 4.35% Amr::InitializeInit() 1 0.06051 0.09757 0.1357 3.85% Amr::defBaseLevel() 1 0.06051 0.09757 0.1357 3.85% check_for_negative_density() 10 0.01789 0.08221 0.1339 3.80% Castro::clean_state() 62 0.1105 0.1163 0.1276 3.62% Castro::initData() 1 0.04444 0.08129 0.1189 3.37% FabArray::ParallelCopy() 41 0.07651 0.09144 0.1171 3.32% Castro::expand_state() 10 0.1028 0.1122 0.1153 3.27% Amr::FinalizeInit() 1 0.03003 0.06801 0.1051 2.98% Castro::estTimeStep() 21 0.03099 0.07142 0.1048 2.97% Castro::do_old_sources() 10 0.08848 0.09871 0.1033 2.93% amrex::Copy() 193 0.06629 0.07905 0.08948 2.54% FabArray::ParallelCopy_finish() 41 0.03806 0.05178 0.08252 2.34% FabArray::setVal() 143 0.06603 0.07198 0.08052 2.28% Castro::initialize_advance() 10 0.06959 0.07477 0.07841 2.22% Castro::computeInitialDt() 2 0.002326 0.04047 0.07741 2.20% Castro::computeTemp() 63 0.06416 0.06857 0.07398 2.10% Castro::do_new_sources() 10 0.05901 0.06329 0.07156 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04684 0.049 0.05284 1.50% Castro::reset_internal_energy(Fab) 1008 0.04656 0.0487 0.0525 1.49% Castro::normalize_species() 62 0.04084 0.04236 0.04795 1.36% FabArray::ParallelCopy_nowait() 41 0.03445 0.03959 0.04157 1.18% StateDataPhysBCFunct::() 41 0.0342 0.03733 0.03999 1.13% StateData::FillBoundary(geom) 41 0.0341 0.03723 0.03987 1.13% Castro::construct_new_source() 50 0.02868 0.0307 0.03538 1.00% Gravity::interpolate_monopole_grav() 21 0.02776 0.02819 0.02896 0.82% Castro::construct_new_gravity_source() 10 0.02245 0.02435 0.02874 0.82% Castro::post_init() 1 0.02684 0.02723 0.0274 0.78% Castro::finalize_do_advance() 10 0.01281 0.02237 0.02727 0.77% Amr::writePlotFile() 2 0.02442 0.02458 0.02493 0.71% Castro::post_timestep() 10 0.01493 0.01588 0.01734 0.49% VisMF::Write(FabArray) 2 0.01276 0.01321 0.01563 0.44% Castro::check_for_nan() 20 0.01049 0.01214 0.01486 0.42% MultiFab::contains_nan() 20 0.01047 0.01212 0.01484 0.42% FabArray::setDomainBndry() 41 0.009043 0.01152 0.01327 0.38% Castro::apply_source_to_state() 20 0.0104 0.01245 0.01326 0.38% FabArray::Saxpy() 20 0.01036 0.0124 0.01321 0.37% Castro::Castro() 1 0.0106 0.01082 0.01144 0.32% Castro::construct_old_source() 50 0.006797 0.009496 0.01016 0.29% Castro::construct_old_gravity_source() 10 0.006739 0.009426 0.01009 0.29% Castro::computeNewDt() 9 0.009756 0.009763 0.009769 0.28% Castro::initMFs() 1 0.006227 0.006422 0.007255 0.21% Castro::enforce_min_density() 62 0.005721 0.006114 0.00645 0.18% AmrLevel::AmrLevel(dm) 1 0.00514 0.005294 0.005794 0.16% StateData::define() 4 0.005111 0.00527 0.005766 0.16% Castro::swap_state_time_levels() 10 0.003157 0.004111 0.004356 0.12% Castro::finalize_advance() 10 0.003034 0.003333 0.003637 0.10% Castro::buildMetrics() 1 0.0016 0.001647 0.001853 0.05% Castro::post_regrid() 1 0.001527 0.001602 0.001652 0.05% Amr::InitAmr() 1 0.0002816 0.0003055 0.0004164 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.218e-05 0.0001243 0.0001471 0.00% DistributionMapping::LeastUsedCPUs() 1 7.418e-06 0.0001183 0.0001383 0.00% Castro::enforce_consistent_e() 1 8.095e-05 8.66e-05 9.331e-05 0.00% FabArrayBase::getCPC() 41 6.552e-05 7.77e-05 9.083e-05 0.00% Amr::writeSmallPlotFile() 1 2.875e-05 5.335e-05 6.151e-05 0.00% Castro::enforce_speed_limit() 62 2.762e-05 3.116e-05 3.682e-05 0.00% Castro::create_source_corrector() 10 7.274e-06 1.169e-05 3.27e-05 0.00% FabArrayBase::CPC::define() 2 2.071e-05 2.421e-05 2.701e-05 0.00% Gravity::swapTimeLevels() 10 1.2e-05 1.43e-05 1.661e-05 0.00% Castro::retry_advance_ctu() 10 6.494e-06 8.278e-06 1.376e-05 0.00% Gravity::set_mass_offset() 10 9.836e-06 1.098e-05 1.247e-05 0.00% Amr::initSubcycle() 1 9.078e-06 9.528e-06 1.021e-05 0.00% Castro::FluxRegCrseInit 10 7.2e-06 7.793e-06 8.714e-06 0.00% Castro::FluxRegFineAdd() 10 2.058e-06 2.403e-06 2.986e-06 0.00% DistributionMapping::Distribute() 1 1.005e-06 1.178e-06 1.477e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-40-gd4d0e9031d03) finalized