MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-43-gde86b7d2224e) initialized Starting run at 05:35:15 UTC on 2023-08-25. Successfully read inputs file ... Castro git describe: 23.08-6-g41b0e2684 AMReX git describe: 23.08-43-gde86b7d22 Microphysics git describe: 23.08-16-g49d804e6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014767648 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36570154 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338211054 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330003159 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330421781 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331829946 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.370159808 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318842031 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312522701 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312771136 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313080892 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0282739 seconds Ending run at 05:35:19 UTC on 2023-08-25. Run time = 3.538951122 Run time without initialization = 3.357470679 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.538 ... 3.539 ... 3.539 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2951 2.3381 2.3991 67.79% Gravity::make_radial_gravity() 21 0.3169 0.3397 0.3537 9.99% check_for_negative_density() 10 0.01881 0.08591 0.1321 3.73% Castro::initData() 1 0.03904 0.07984 0.116 3.28% Castro::estTimeStep() 21 0.02723 0.06426 0.1075 3.04% FabArray::ParallelCopy_finish() 41 0.03839 0.0538 0.09872 2.79% amrex::Copy() 193 0.06276 0.07947 0.09341 2.64% FabArray::setVal() 143 0.05471 0.06817 0.07638 2.16% Castro::reset_internal_energy(Fab) 1008 0.04698 0.04829 0.04989 1.41% StateData::FillBoundary(geom) 41 0.03422 0.03792 0.04957 1.40% Castro::normalize_species() 62 0.04085 0.04201 0.04399 1.24% FabArray::ParallelCopy_nowait() 41 0.03391 0.03967 0.04151 1.17% FillPatchIterator::Initialize 41 0.02688 0.03107 0.0335 0.95% Gravity::interpolate_monopole_grav() 21 0.02779 0.02816 0.02864 0.81% Amr::writePlotFile() 2 0.02439 0.02749 0.02837 0.80% Castro::construct_new_gravity_source() 10 0.02155 0.02373 0.02571 0.73% Castro::computeTemp() 63 0.01779 0.01926 0.02055 0.58% Castro::initialize_do_advance() 10 0.0118 0.01644 0.01779 0.50% VisMF::Write(FabArray) 2 0.01236 0.0132 0.01622 0.46% MultiFab::contains_nan() 20 0.01063 0.01205 0.01525 0.43% Castro::initialize_advance() 10 0.003872 0.01085 0.01437 0.41% FabArray::Saxpy() 20 0.0105 0.01252 0.0137 0.39% FabArray::setDomainBndry() 41 0.008385 0.01103 0.01242 0.35% Castro::construct_old_gravity_source() 10 0.006405 0.009244 0.01019 0.29% Castro::initMFs() 1 0.006192 0.006685 0.007751 0.22% Castro::construct_new_source() 50 0.005698 0.006383 0.006836 0.19% Castro::enforce_min_density() 62 0.005713 0.006051 0.006411 0.18% StateData::define() 4 0.005187 0.00544 0.005908 0.17% Castro::swap_state_time_levels() 10 0.003105 0.004172 0.004874 0.14% main() 1 0.003609 0.004382 0.004866 0.14% Gravity::get_new_grav_vector() 11 0.00296 0.003463 0.003853 0.11% Gravity::get_old_grav_vector() 10 0.001538 0.001921 0.002338 0.07% Amr::coarseTimeStep() 10 0.001287 0.001663 0.001971 0.06% Castro::buildMetrics() 1 0.001456 0.001554 0.001724 0.05% Castro::finalize_do_advance() 10 0.0004883 0.001093 0.001375 0.04% AmrLevel::FillPatch() 41 0.0007384 0.000881 0.001104 0.03% Amr::timeStep() 10 0.0001701 0.0002389 0.0004653 0.01% Amr::InitAmr() 1 0.0002614 0.0003095 0.0004134 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002797 0.0002918 0.0003012 0.01% Castro::do_advance_ctu() 10 0.0001237 0.0001569 0.0001925 0.01% Castro::clean_state() 62 0.0001286 0.0001454 0.0001625 0.00% DistributionMapping::LeastUsedCPUs() 1 7.913e-06 0.0001074 0.000145 0.00% Castro::enforce_consistent_e() 1 7.814e-05 8.943e-05 0.0001279 0.00% StateDataPhysBCFunct::() 41 8.443e-05 9.779e-05 0.0001235 0.00% FillPatchIterator::FillFromLevel0() 41 9.975e-05 0.0001089 0.0001186 0.00% Castro::finalize_advance() 10 8.117e-05 9.859e-05 0.000118 0.00% Castro::do_old_sources() 10 7.13e-05 9.028e-05 0.0001012 0.00% Castro::Castro() 1 5.7e-05 7.06e-05 9.534e-05 0.00% Castro::construct_old_source() 50 5.545e-05 7.067e-05 8.606e-05 0.00% FabArray::ParallelCopy() 41 6.128e-05 7.066e-05 8.037e-05 0.00% Amr::FinalizeInit() 1 3.611e-06 1.323e-05 7.302e-05 0.00% FillPatchSingleLevel 41 5.543e-05 6.378e-05 7.272e-05 0.00% Castro::do_new_sources() 10 4.923e-05 5.964e-05 6.876e-05 0.00% Amr::writeSmallPlotFile() 1 3.338e-05 4.836e-05 6.42e-05 0.00% Castro::construct_old_gravity() 10 3.923e-05 4.74e-05 6.248e-05 0.00% Castro::subcycle_advance_ctu() 10 4.096e-05 5.107e-05 6.116e-05 0.00% FabArrayBase::getCPC() 41 3.512e-05 4.73e-05 5.455e-05 0.00% Castro::apply_source_to_state() 20 3.389e-05 4.476e-05 5.339e-05 0.00% Castro::construct_new_gravity() 10 3.676e-05 4.157e-05 5.299e-05 0.00% Amr::defBaseLevel() 1 2.695e-05 3.81e-05 5.249e-05 0.00% Castro::advance() 10 3.702e-05 4.301e-05 4.845e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.414e-05 3.219e-05 0.00% Castro::enforce_speed_limit() 62 2.652e-05 2.935e-05 3.144e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.718e-05 2.237e-05 2.964e-05 0.00% Castro::expand_state() 10 1.916e-05 2.299e-05 2.483e-05 0.00% Castro::check_for_nan() 20 1.908e-05 2.067e-05 2.328e-05 0.00% Castro::post_timestep() 10 1.178e-05 1.441e-05 1.936e-05 0.00% Castro::create_source_corrector() 10 6.792e-06 9.727e-06 1.638e-05 0.00% Gravity::swapTimeLevels() 10 1.102e-05 1.36e-05 1.57e-05 0.00% Gravity::set_mass_offset() 10 8.872e-06 1.087e-05 1.226e-05 0.00% Castro::computeNewDt() 9 8.724e-06 1.028e-05 1.192e-05 0.00% Amr::initSubcycle() 1 8.635e-06 9.355e-06 1.029e-05 0.00% Amr::initialInit() 1 1.347e-06 3.233e-06 8.72e-06 0.00% Castro::retry_advance_ctu() 10 6.249e-06 7.44e-06 8.527e-06 0.00% Castro::FluxRegCrseInit 10 6.513e-06 7.547e-06 8.297e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.557e-06 4.63e-06 7.355e-06 0.00% Castro::computeInitialDt() 2 3.672e-06 4.325e-06 4.955e-06 0.00% Castro::post_regrid() 1 1.865e-06 3.017e-06 4.662e-06 0.00% Amr::InitializeInit() 1 1.937e-06 2.368e-06 4.5e-06 0.00% Castro::post_init() 1 2.927e-06 3.351e-06 3.83e-06 0.00% Amr::init() 1 1.909e-06 2.219e-06 2.874e-06 0.00% Castro::FluxRegFineAdd() 10 1.932e-06 2.306e-06 2.643e-06 0.00% DistributionMapping::Distribute() 1 9.38e-07 1.132e-06 1.622e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.538 3.539 3.539 100.00% Amr::coarseTimeStep() 10 3.324 3.324 3.324 93.93% Amr::timeStep() 10 3.312 3.312 3.313 93.61% Castro::advance() 10 3.296 3.296 3.297 93.15% Castro::subcycle_advance_ctu() 10 3.218 3.223 3.24 91.55% Castro::do_advance_ctu() 10 3.218 3.223 3.24 91.55% Castro::construct_ctu_hydro_source() 10 2.439 2.445 2.449 69.19% Gravity::make_radial_gravity() 21 0.3327 0.3559 0.3665 10.36% AmrLevel::FillPatch() 41 0.1782 0.2047 0.2272 6.42% Castro::construct_old_gravity() 10 0.1972 0.2169 0.2265 6.40% Gravity::get_old_grav_vector() 10 0.1961 0.2162 0.2258 6.38% Gravity::get_new_grav_vector() 11 0.2209 0.2221 0.223 6.30% FillPatchIterator::Initialize 41 0.1489 0.1739 0.2038 5.76% Castro::construct_new_gravity() 10 0.1954 0.1964 0.197 5.57% Castro::initialize_do_advance() 10 0.1595 0.167 0.1836 5.19% Amr::init() 1 0.1809 0.181 0.1811 5.12% FillPatchIterator::FillFromLevel0() 41 0.1118 0.1318 0.1686 4.76% FillPatchSingleLevel 41 0.1117 0.1317 0.1684 4.76% Amr::initialInit() 1 0.166 0.1662 0.1664 4.70% Amr::InitializeInit() 1 0.05957 0.1001 0.1366 3.86% Amr::defBaseLevel() 1 0.05957 0.1001 0.1366 3.86% FabArray::ParallelCopy() 41 0.07711 0.09361 0.1328 3.75% check_for_negative_density() 10 0.01881 0.08591 0.1321 3.73% Castro::expand_state() 10 0.1041 0.1131 0.1271 3.59% Castro::initData() 1 0.0428 0.08387 0.121 3.42% Castro::clean_state() 62 0.113 0.1151 0.1202 3.40% Castro::estTimeStep() 21 0.02723 0.06426 0.1075 3.04% Amr::FinalizeInit() 1 0.02967 0.06604 0.1064 3.01% Castro::do_old_sources() 10 0.08904 0.09928 0.1038 2.93% FabArray::ParallelCopy_finish() 41 0.03839 0.0538 0.09872 2.79% amrex::Copy() 193 0.06276 0.07947 0.09341 2.64% Castro::computeInitialDt() 2 0.002514 0.03897 0.07941 2.24% FabArray::setVal() 143 0.05471 0.06817 0.07638 2.16% Castro::initialize_advance() 10 0.05232 0.07028 0.0749 2.12% Castro::computeTemp() 63 0.06567 0.06784 0.07073 2.00% Castro::do_new_sources() 10 0.0597 0.06304 0.06799 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04727 0.04858 0.05018 1.42% Castro::reset_internal_energy(Fab) 1008 0.04698 0.04829 0.04989 1.41% StateDataPhysBCFunct::() 41 0.03433 0.03802 0.0497 1.40% StateData::FillBoundary(geom) 41 0.03422 0.03792 0.04957 1.40% Castro::normalize_species() 62 0.04085 0.04201 0.04399 1.24% Amr::writePlotFile() 2 0.04299 0.04325 0.04341 1.23% FabArray::ParallelCopy_nowait() 41 0.03398 0.03974 0.04158 1.17% Castro::construct_new_source() 50 0.02725 0.03012 0.03255 0.92% Gravity::interpolate_monopole_grav() 21 0.02779 0.02816 0.02864 0.81% Castro::post_init() 1 0.02663 0.02671 0.02692 0.76% Castro::construct_new_gravity_source() 10 0.02155 0.02373 0.02571 0.73% Castro::finalize_do_advance() 10 0.01151 0.01734 0.0216 0.61% VisMF::Write(FabArray) 2 0.01236 0.0132 0.01622 0.46% Castro::post_timestep() 10 0.01528 0.01577 0.01594 0.45% Castro::check_for_nan() 20 0.01065 0.01207 0.01528 0.43% MultiFab::contains_nan() 20 0.01063 0.01205 0.01525 0.43% Castro::apply_source_to_state() 20 0.01054 0.01256 0.01375 0.39% FabArray::Saxpy() 20 0.0105 0.01252 0.0137 0.39% FabArray::setDomainBndry() 41 0.008385 0.01103 0.01242 0.35% Castro::Castro() 1 0.0101 0.01063 0.01152 0.33% Castro::construct_old_source() 50 0.006461 0.009315 0.01027 0.29% Castro::construct_old_gravity_source() 10 0.006405 0.009244 0.01019 0.29% Castro::computeNewDt() 9 0.00906 0.00907 0.009081 0.26% Castro::initMFs() 1 0.006192 0.006685 0.007751 0.22% Castro::enforce_min_density() 62 0.005713 0.006051 0.006411 0.18% AmrLevel::AmrLevel(dm) 1 0.005208 0.005462 0.005932 0.17% StateData::define() 4 0.005187 0.00544 0.005908 0.17% Castro::swap_state_time_levels() 10 0.003105 0.004172 0.004874 0.14% Castro::finalize_advance() 10 0.003122 0.003314 0.003509 0.10% Castro::buildMetrics() 1 0.001592 0.001697 0.00189 0.05% Castro::post_regrid() 1 0.001509 0.001625 0.001845 0.05% Amr::InitAmr() 1 0.0002708 0.0003188 0.0004231 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.317e-05 0.0001132 0.0001539 0.00% DistributionMapping::LeastUsedCPUs() 1 7.913e-06 0.0001074 0.000145 0.00% Castro::enforce_consistent_e() 1 7.814e-05 8.943e-05 0.0001279 0.00% FabArrayBase::getCPC() 41 5.908e-05 7.145e-05 7.752e-05 0.00% Amr::writeSmallPlotFile() 1 3.338e-05 4.836e-05 6.42e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.414e-05 3.219e-05 0.00% Castro::enforce_speed_limit() 62 2.652e-05 2.935e-05 3.144e-05 0.00% Castro::create_source_corrector() 10 6.792e-06 9.727e-06 1.638e-05 0.00% Gravity::swapTimeLevels() 10 1.102e-05 1.36e-05 1.57e-05 0.00% Gravity::set_mass_offset() 10 8.872e-06 1.087e-05 1.226e-05 0.00% Amr::initSubcycle() 1 8.635e-06 9.355e-06 1.029e-05 0.00% Castro::retry_advance_ctu() 10 6.249e-06 7.44e-06 8.527e-06 0.00% Castro::FluxRegCrseInit 10 6.513e-06 7.547e-06 8.297e-06 0.00% Castro::FluxRegFineAdd() 10 1.932e-06 2.306e-06 2.643e-06 0.00% DistributionMapping::Distribute() 1 9.38e-07 1.132e-06 1.622e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-43-gde86b7d2224e) finalized