MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-47-gc45770c9f9b2) initialized Starting run at 05:24:59 UTC on 2023-08-28. Successfully read inputs file ... Castro git describe: 23.08-7-gf1b93be75 AMReX git describe: 23.08-47-gc45770c9f Microphysics git describe: 23.08-17-g5e610453 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014951682 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.37261398 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.366549323 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.358497123 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333528269 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361205171 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330682451 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310146109 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307898549 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310170833 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309969924 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009867276 seconds Ending run at 05:25:03 UTC on 2023-08-28. Run time = 3.568084369 Run time without initialization = 3.376875875 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.566 ... 3.567 ... 3.568 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2361 2.3514 2.3922 67.04% Gravity::make_radial_gravity() 21 0.3262 0.3341 0.3539 9.92% check_for_negative_density() 10 0.06757 0.1101 0.228 6.39% Castro::estTimeStep() 21 0.02371 0.07483 0.1241 3.48% Castro::initData() 1 0.03906 0.0819 0.124 3.48% amrex::Copy() 193 0.06345 0.07765 0.08658 2.43% FabArray::setVal() 143 0.06407 0.07158 0.08077 2.26% FabArray::ParallelCopy_finish() 41 0.03494 0.0489 0.07117 1.99% Castro::reset_internal_energy(Fab) 1008 0.04677 0.04844 0.05028 1.41% FabArray::ParallelCopy_nowait() 41 0.03382 0.0407 0.04288 1.20% Castro::normalize_species() 62 0.04074 0.04146 0.04231 1.19% StateData::FillBoundary(geom) 41 0.03382 0.03666 0.03913 1.10% FillPatchIterator::Initialize 41 0.02737 0.03288 0.03519 0.99% Gravity::interpolate_monopole_grav() 21 0.02795 0.02833 0.02876 0.81% Castro::construct_new_gravity_source() 10 0.02222 0.02422 0.02716 0.76% Castro::initialize_do_advance() 10 0.01141 0.01761 0.02121 0.59% Castro::computeTemp() 63 0.01765 0.01926 0.02074 0.58% VisMF::Write(FabArray) 2 0.01278 0.01322 0.01496 0.42% Castro::initialize_advance() 10 0.009785 0.0121 0.01433 0.40% FabArray::Saxpy() 20 0.01023 0.01242 0.01323 0.37% FabArray::setDomainBndry() 41 0.008602 0.01158 0.01256 0.35% MultiFab::contains_nan() 20 0.01077 0.01161 0.01236 0.35% Castro::construct_old_gravity_source() 10 0.006904 0.009443 0.01026 0.29% Amr::writePlotFile() 2 0.008205 0.009072 0.009346 0.26% Castro::initMFs() 1 0.006277 0.006791 0.007418 0.21% Castro::construct_new_source() 50 0.005458 0.006145 0.006373 0.18% Castro::enforce_min_density() 62 0.005805 0.006091 0.006366 0.18% Gravity::get_new_grav_vector() 11 0.002703 0.003995 0.005867 0.16% StateData::define() 4 0.005179 0.005503 0.005866 0.16% main() 1 0.003192 0.004223 0.005048 0.14% Castro::swap_state_time_levels() 10 0.002129 0.004194 0.004961 0.14% Amr::coarseTimeStep() 10 0.001956 0.002707 0.00349 0.10% Gravity::get_old_grav_vector() 10 0.001599 0.002067 0.002385 0.07% Castro::buildMetrics() 1 0.001512 0.001663 0.002053 0.06% Castro::finalize_do_advance() 10 0.0004754 0.001008 0.001224 0.03% AmrLevel::FillPatch() 41 0.0007131 0.0007982 0.0009334 0.03% Amr::InitAmr() 1 0.0002767 0.000311 0.0004184 0.01% Amr::timeStep() 10 0.0001619 0.0002169 0.0003893 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002795 0.0002861 0.0002953 0.01% Castro::clean_state() 62 0.0001396 0.0001531 0.0002035 0.01% Castro::do_advance_ctu() 10 0.0001223 0.0001519 0.0001805 0.01% DistributionMapping::LeastUsedCPUs() 1 6.845e-06 0.0001101 0.0001456 0.00% FillPatchIterator::FillFromLevel0() 41 9.082e-05 0.0001058 0.0001279 0.00% Castro::finalize_advance() 10 7.9e-05 0.0001004 0.0001158 0.00% Castro::enforce_consistent_e() 1 7.94e-05 8.894e-05 0.0001055 0.00% Castro::do_old_sources() 10 6.676e-05 8.882e-05 0.0001031 0.00% StateDataPhysBCFunct::() 41 8.183e-05 9.461e-05 0.000103 0.00% Castro::Castro() 1 6.068e-05 7.035e-05 9.864e-05 0.00% FillPatchSingleLevel 41 5.287e-05 6.433e-05 8.018e-05 0.00% Castro::construct_old_source() 50 4.818e-05 6.714e-05 7.976e-05 0.00% FabArray::ParallelCopy() 41 6.22e-05 7.154e-05 7.915e-05 0.00% Amr::FinalizeInit() 1 4.499e-06 1.465e-05 7.628e-05 0.00% Castro::do_new_sources() 10 4.914e-05 6.096e-05 7.024e-05 0.00% Amr::writeSmallPlotFile() 1 2.968e-05 4.467e-05 6.041e-05 0.00% Castro::subcycle_advance_ctu() 10 4.28e-05 4.946e-05 5.924e-05 0.00% Castro::advance() 10 3.494e-05 4.43e-05 5.459e-05 0.00% FabArrayBase::getCPC() 41 4.128e-05 4.633e-05 5.152e-05 0.00% Castro::apply_source_to_state() 20 3.491e-05 4.235e-05 5.003e-05 0.00% Castro::construct_old_gravity() 10 3.876e-05 4.363e-05 4.973e-05 0.00% Amr::defBaseLevel() 1 3.158e-05 3.961e-05 4.77e-05 0.00% Castro::construct_new_gravity() 10 3.398e-05 3.766e-05 4.602e-05 0.00% Castro::enforce_speed_limit() 62 2.671e-05 2.927e-05 3.265e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.595e-05 2.268e-05 3.103e-05 0.00% FabArrayBase::CPC::define() 2 2.107e-05 2.465e-05 2.894e-05 0.00% Castro::expand_state() 10 1.857e-05 2.226e-05 2.549e-05 0.00% Castro::check_for_nan() 20 2.034e-05 2.167e-05 2.376e-05 0.00% Amr::initSubcycle() 1 8.979e-06 1.109e-05 2.068e-05 0.00% Castro::post_timestep() 10 1.114e-05 1.409e-05 1.628e-05 0.00% Gravity::swapTimeLevels() 10 9.961e-06 1.398e-05 1.554e-05 0.00% Gravity::set_mass_offset() 10 8.026e-06 9.807e-06 1.174e-05 0.00% Castro::computeNewDt() 9 8.485e-06 9.822e-06 1.164e-05 0.00% Castro::create_source_corrector() 10 6.962e-06 7.861e-06 8.866e-06 0.00% Castro::FluxRegCrseInit 10 5.441e-06 7.145e-06 8.718e-06 0.00% Castro::retry_advance_ctu() 10 6.887e-06 7.369e-06 8.173e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.858e-06 5.076e-06 6.838e-06 0.00% Castro::computeInitialDt() 2 4.57e-06 5.059e-06 5.847e-06 0.00% Amr::InitializeInit() 1 1.874e-06 2.374e-06 4.649e-06 0.00% Castro::post_regrid() 1 2.004e-06 3.534e-06 4.529e-06 0.00% Castro::post_init() 1 2.725e-06 3.538e-06 4.298e-06 0.00% Amr::init() 1 2.165e-06 2.657e-06 3.024e-06 0.00% Castro::FluxRegFineAdd() 10 1.912e-06 2.287e-06 2.604e-06 0.00% DistributionMapping::Distribute() 1 9.72e-07 1.409e-06 2.118e-06 0.00% Amr::initialInit() 1 1.349e-06 1.708e-06 2.008e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.566 3.567 3.568 100.00% Amr::coarseTimeStep() 10 3.362 3.362 3.362 94.22% Amr::timeStep() 10 3.348 3.349 3.349 93.87% Castro::advance() 10 3.332 3.333 3.333 93.41% Castro::subcycle_advance_ctu() 10 3.249 3.255 3.26 91.35% Castro::do_advance_ctu() 10 3.249 3.255 3.26 91.35% Castro::construct_ctu_hydro_source() 10 2.481 2.483 2.486 69.68% Gravity::make_radial_gravity() 21 0.3422 0.3507 0.3675 10.30% Gravity::get_new_grav_vector() 11 0.2286 0.2312 0.2327 6.52% check_for_negative_density() 10 0.06757 0.1101 0.228 6.39% Castro::construct_old_gravity() 10 0.1986 0.2025 0.2156 6.04% Gravity::get_old_grav_vector() 10 0.198 0.2019 0.215 6.03% AmrLevel::FillPatch() 41 0.1876 0.2021 0.2133 5.98% Castro::construct_new_gravity() 10 0.2029 0.2045 0.2057 5.76% Amr::init() 1 0.1906 0.1907 0.1908 5.35% FillPatchIterator::Initialize 41 0.1592 0.1711 0.1798 5.04% Castro::initialize_do_advance() 10 0.1522 0.1701 0.1777 4.98% Amr::initialInit() 1 0.1755 0.1759 0.1761 4.94% Amr::InitializeInit() 1 0.05853 0.1023 0.1452 4.07% Amr::defBaseLevel() 1 0.05853 0.1023 0.1452 4.07% FillPatchIterator::FillFromLevel0() 41 0.1122 0.1267 0.1392 3.90% FillPatchSingleLevel 41 0.1121 0.1266 0.1391 3.90% Castro::initData() 1 0.04318 0.08588 0.1278 3.58% Castro::estTimeStep() 21 0.02371 0.07483 0.1241 3.48% Castro::expand_state() 10 0.105 0.1156 0.1237 3.47% Castro::clean_state() 62 0.112 0.1148 0.1188 3.33% Amr::FinalizeInit() 1 0.03085 0.07355 0.1174 3.29% FabArray::ParallelCopy() 41 0.07565 0.08974 0.1051 2.95% Castro::do_old_sources() 10 0.08948 0.0932 0.09579 2.68% Castro::computeInitialDt() 2 0.002342 0.04517 0.08896 2.49% amrex::Copy() 193 0.06345 0.07765 0.08658 2.43% FabArray::setVal() 143 0.06407 0.07158 0.08077 2.26% Castro::initialize_advance() 10 0.06972 0.07463 0.08027 2.25% Castro::do_new_sources() 10 0.0588 0.06428 0.07263 2.04% Castro::computeTemp() 63 0.06576 0.06799 0.0713 2.00% FabArray::ParallelCopy_finish() 41 0.03494 0.0489 0.07117 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04706 0.04873 0.05056 1.42% Castro::reset_internal_energy(Fab) 1008 0.04677 0.04844 0.05028 1.41% FabArray::ParallelCopy_nowait() 41 0.03389 0.04077 0.04295 1.20% Castro::normalize_species() 62 0.04074 0.04146 0.04231 1.19% StateDataPhysBCFunct::() 41 0.03391 0.03676 0.03923 1.10% StateData::FillBoundary(geom) 41 0.03382 0.03666 0.03913 1.10% Castro::construct_new_source() 50 0.02838 0.03037 0.03343 0.94% Gravity::interpolate_monopole_grav() 21 0.02795 0.02833 0.02876 0.81% Castro::post_init() 1 0.02742 0.02793 0.02824 0.79% Castro::finalize_do_advance() 10 0.01305 0.02136 0.02766 0.78% Castro::construct_new_gravity_source() 10 0.02222 0.02422 0.02716 0.76% Amr::writePlotFile() 2 0.02458 0.02485 0.0251 0.70% Castro::post_timestep() 10 0.01531 0.01575 0.01634 0.46% VisMF::Write(FabArray) 2 0.01278 0.01322 0.01496 0.42% Castro::apply_source_to_state() 20 0.01027 0.01246 0.01328 0.37% FabArray::Saxpy() 20 0.01023 0.01242 0.01323 0.37% FabArray::setDomainBndry() 41 0.008602 0.01158 0.01256 0.35% Castro::check_for_nan() 20 0.01079 0.01163 0.01238 0.35% MultiFab::contains_nan() 20 0.01077 0.01161 0.01236 0.35% Castro::Castro() 1 0.009889 0.01076 0.01172 0.33% Castro::construct_old_source() 50 0.006952 0.00951 0.01034 0.29% Castro::construct_old_gravity_source() 10 0.006904 0.009443 0.01026 0.29% Castro::computeNewDt() 9 0.009314 0.00933 0.009346 0.26% Castro::initMFs() 1 0.006277 0.006791 0.007418 0.21% Castro::enforce_min_density() 62 0.005805 0.006091 0.006366 0.18% AmrLevel::AmrLevel(dm) 1 0.005195 0.005526 0.005897 0.17% StateData::define() 4 0.005179 0.005503 0.005866 0.16% Castro::swap_state_time_levels() 10 0.002129 0.004194 0.004961 0.14% Castro::finalize_advance() 10 0.003014 0.003472 0.004282 0.12% Castro::buildMetrics() 1 0.001645 0.001819 0.002254 0.06% Castro::post_regrid() 1 0.001536 0.001711 0.002089 0.06% Amr::InitAmr() 1 0.0002864 0.0003221 0.0004274 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.168e-05 0.0001166 0.0001538 0.00% DistributionMapping::LeastUsedCPUs() 1 6.845e-06 0.0001101 0.0001456 0.00% Castro::enforce_consistent_e() 1 7.94e-05 8.894e-05 0.0001055 0.00% FabArrayBase::getCPC() 41 6.492e-05 7.098e-05 7.692e-05 0.00% Amr::writeSmallPlotFile() 1 2.968e-05 4.467e-05 6.041e-05 0.00% Castro::enforce_speed_limit() 62 2.671e-05 2.927e-05 3.265e-05 0.00% FabArrayBase::CPC::define() 2 2.107e-05 2.465e-05 2.894e-05 0.00% Amr::initSubcycle() 1 8.979e-06 1.109e-05 2.068e-05 0.00% Gravity::swapTimeLevels() 10 9.961e-06 1.398e-05 1.554e-05 0.00% Gravity::set_mass_offset() 10 8.026e-06 9.807e-06 1.174e-05 0.00% Castro::create_source_corrector() 10 6.962e-06 7.861e-06 8.866e-06 0.00% Castro::FluxRegCrseInit 10 5.441e-06 7.145e-06 8.718e-06 0.00% Castro::retry_advance_ctu() 10 6.887e-06 7.369e-06 8.173e-06 0.00% Castro::FluxRegFineAdd() 10 1.912e-06 2.287e-06 2.604e-06 0.00% DistributionMapping::Distribute() 1 9.72e-07 1.409e-06 2.118e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-47-gc45770c9f9b2) finalized