MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-49-g22908d8ad214) initialized Starting run at 05:21:34 UTC on 2023-08-29. Successfully read inputs file ... Castro git describe: 23.08-7-gf1b93be75 AMReX git describe: 23.08-49-g22908d8ad Microphysics git describe: 23.08-17-g5e610453 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014892084 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370306023 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342493375 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328819924 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327942022 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337063699 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353643693 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309891894 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311070221 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310092553 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312714353 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009868464 seconds Ending run at 05:21:37 UTC on 2023-08-29. Run time = 3.533714874 Run time without initialization = 3.318849058 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.532 ... 3.533 ... 3.534 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2614 2.3320 2.3597 66.78% Gravity::make_radial_gravity() 21 0.3221 0.3323 0.3424 9.69% Castro::estTimeStep() 21 0.03496 0.09467 0.1461 4.13% Castro::initData() 1 0.03835 0.08424 0.143 4.05% check_for_negative_density() 10 0.02855 0.05792 0.13 3.68% FabArray::ParallelCopy_finish() 41 0.03414 0.06071 0.09884 2.80% amrex::Copy() 193 0.06789 0.07919 0.08697 2.46% FabArray::setVal() 143 0.06305 0.07097 0.08417 2.38% Castro::reset_internal_energy(Fab) 1008 0.04689 0.04983 0.05394 1.53% Castro::normalize_species() 62 0.04098 0.04225 0.04443 1.26% FabArray::ParallelCopy_nowait() 41 0.03472 0.03979 0.04179 1.18% StateData::FillBoundary(geom) 41 0.03572 0.03761 0.03972 1.12% FillPatchIterator::Initialize 41 0.02695 0.03184 0.03675 1.04% Gravity::interpolate_monopole_grav() 21 0.02832 0.02883 0.02963 0.84% Castro::construct_new_gravity_source() 10 0.0213 0.02386 0.02542 0.72% Castro::computeTemp() 63 0.01795 0.02018 0.02248 0.64% Castro::initialize_do_advance() 10 0.01211 0.01758 0.02237 0.63% VisMF::Write(FabArray) 2 0.01285 0.01355 0.01649 0.47% FabArray::Saxpy() 20 0.01051 0.01293 0.01431 0.41% Castro::initialize_advance() 10 0.004154 0.01019 0.01355 0.38% FabArray::setDomainBndry() 41 0.008565 0.01117 0.01233 0.35% MultiFab::contains_nan() 20 0.009493 0.01057 0.01177 0.33% Castro::construct_old_gravity_source() 10 0.007053 0.009695 0.01034 0.29% Castro::initMFs() 1 0.006093 0.007231 0.00978 0.28% Amr::writePlotFile() 2 0.006425 0.008874 0.009452 0.27% Castro::enforce_min_density() 62 0.007093 0.007512 0.008126 0.23% StateData::define() 4 0.005072 0.005924 0.007774 0.22% Amr::coarseTimeStep() 10 0.002082 0.005414 0.007506 0.21% Castro::construct_new_source() 50 0.005633 0.006401 0.006877 0.19% Castro::swap_state_time_levels() 10 0.002453 0.004077 0.004405 0.12% main() 1 0.002951 0.003852 0.004337 0.12% Gravity::get_new_grav_vector() 11 0.002893 0.003482 0.003896 0.11% Gravity::get_old_grav_vector() 10 0.001625 0.00196 0.00243 0.07% Castro::buildMetrics() 1 0.001468 0.001719 0.002224 0.06% Castro::finalize_do_advance() 10 0.0004288 0.001094 0.001352 0.04% AmrLevel::FillPatch() 41 0.0007041 0.0008438 0.0009962 0.03% Amr::InitAmr() 1 0.0002483 0.0003443 0.0006278 0.02% DistributionMapping::LeastUsedCPUs() 1 7.259e-06 0.0003309 0.000433 0.01% Amr::timeStep() 10 0.0001555 0.0002223 0.0004195 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002924 0.0003175 0.0003615 0.01% Castro::do_advance_ctu() 10 0.0001268 0.000165 0.0001882 0.01% Castro::clean_state() 62 0.0001458 0.0001595 0.0001795 0.01% Castro::enforce_consistent_e() 1 7.666e-05 9.814e-05 0.0001477 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001007 0.0001148 0.0001413 0.00% Castro::finalize_advance() 10 8.398e-05 0.0001008 0.0001382 0.00% Castro::do_old_sources() 10 7.303e-05 9.738e-05 0.0001152 0.00% StateDataPhysBCFunct::() 41 8.482e-05 9.566e-05 0.0001058 0.00% FabArray::ParallelCopy() 41 6.741e-05 7.413e-05 8.572e-05 0.00% Castro::Castro() 1 5.629e-05 7.179e-05 8.538e-05 0.00% Amr::FinalizeInit() 1 3.63e-06 1.505e-05 8.343e-05 0.00% Castro::construct_old_source() 50 5.775e-05 7.045e-05 8.226e-05 0.00% FillPatchSingleLevel 41 5.562e-05 6.509e-05 7.071e-05 0.00% Castro::do_new_sources() 10 5.627e-05 6.487e-05 6.926e-05 0.00% Amr::writeSmallPlotFile() 1 3.222e-05 4.377e-05 6.467e-05 0.00% FabArrayBase::getCPC() 41 4.274e-05 5.099e-05 6.204e-05 0.00% Castro::advance() 10 3.882e-05 4.66e-05 5.877e-05 0.00% Castro::apply_source_to_state() 20 3.708e-05 4.792e-05 5.625e-05 0.00% Castro::construct_old_gravity() 10 3.936e-05 4.543e-05 5.553e-05 0.00% Castro::subcycle_advance_ctu() 10 3.797e-05 4.877e-05 5.338e-05 0.00% Castro::construct_new_gravity() 10 3.324e-05 3.831e-05 4.381e-05 0.00% Castro::retry_advance_ctu() 10 6.529e-06 1.153e-05 4.195e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.21e-05 3.196e-05 4.085e-05 0.00% Amr::defBaseLevel() 1 2.417e-05 3.023e-05 3.626e-05 0.00% FabArrayBase::CPC::define() 2 2.209e-05 2.822e-05 3.548e-05 0.00% Castro::post_timestep() 10 1.276e-05 1.636e-05 3.49e-05 0.00% Castro::expand_state() 10 2.095e-05 2.521e-05 3.018e-05 0.00% Castro::enforce_speed_limit() 62 2.559e-05 2.826e-05 3.011e-05 0.00% Castro::check_for_nan() 20 1.91e-05 2.132e-05 2.367e-05 0.00% Gravity::set_mass_offset() 10 8.802e-06 1.223e-05 1.967e-05 0.00% Amr::initSubcycle() 1 8.949e-06 1.132e-05 1.723e-05 0.00% Gravity::swapTimeLevels() 10 1.053e-05 1.355e-05 1.67e-05 0.00% Castro::computeNewDt() 9 8.57e-06 9.57e-06 1.154e-05 0.00% Castro::create_source_corrector() 10 7.241e-06 8.997e-06 1.062e-05 0.00% Amr::init() 1 1.868e-06 3.854e-06 9.458e-06 0.00% Castro::FluxRegCrseInit 10 5.634e-06 6.922e-06 7.772e-06 0.00% Castro::post_regrid() 1 1.872e-06 4.104e-06 7.211e-06 0.00% Castro::computeInitialDt() 2 3.325e-06 4.901e-06 5.956e-06 0.00% Amr::InitializeInit() 1 1.93e-06 2.593e-06 5.8e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.815e-06 4.668e-06 5.638e-06 0.00% Castro::post_init() 1 3.117e-06 3.891e-06 4.943e-06 0.00% Castro::FluxRegFineAdd() 10 2.009e-06 2.439e-06 2.771e-06 0.00% Amr::initialInit() 1 1.439e-06 1.876e-06 2.572e-06 0.00% DistributionMapping::Distribute() 1 9.42e-07 1.207e-06 1.45e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.532 3.533 3.534 100.00% Amr::coarseTimeStep() 10 3.305 3.305 3.305 93.52% Amr::timeStep() 10 3.286 3.289 3.292 93.15% Castro::advance() 10 3.271 3.272 3.273 92.62% Castro::subcycle_advance_ctu() 10 3.184 3.195 3.205 90.69% Castro::do_advance_ctu() 10 3.184 3.195 3.205 90.69% Castro::construct_ctu_hydro_source() 10 2.41 2.411 2.413 68.27% Gravity::make_radial_gravity() 21 0.3377 0.3488 0.3563 10.08% AmrLevel::FillPatch() 41 0.191 0.2124 0.2299 6.51% Gravity::get_new_grav_vector() 11 0.2258 0.2269 0.2276 6.44% Amr::init() 1 0.2141 0.2144 0.2145 6.07% Castro::construct_old_gravity() 10 0.1988 0.2064 0.2128 6.02% Gravity::get_old_grav_vector() 10 0.1977 0.2056 0.2122 6.00% FillPatchIterator::Initialize 41 0.1599 0.1816 0.2053 5.81% Castro::construct_new_gravity() 10 0.1995 0.2001 0.2009 5.68% Amr::initialInit() 1 0.199 0.1992 0.1994 5.64% Castro::initialize_do_advance() 10 0.1676 0.1788 0.187 5.29% FillPatchIterator::FillFromLevel0() 41 0.1122 0.1385 0.1698 4.80% FillPatchSingleLevel 41 0.112 0.1384 0.1696 4.80% Amr::InitializeInit() 1 0.05773 0.1056 0.1686 4.77% Amr::defBaseLevel() 1 0.05772 0.1056 0.1686 4.77% Castro::initData() 1 0.04214 0.08829 0.1468 4.15% Castro::estTimeStep() 21 0.03496 0.09467 0.1461 4.13% Amr::FinalizeInit() 1 0.03052 0.09362 0.1415 4.00% Castro::expand_state() 10 0.1094 0.1239 0.1345 3.81% FabArray::ParallelCopy() 41 0.07379 0.1007 0.1337 3.78% check_for_negative_density() 10 0.02855 0.05792 0.13 3.68% Castro::clean_state() 62 0.114 0.1193 0.128 3.62% Castro::computeInitialDt() 2 0.002318 0.06553 0.1135 3.21% Castro::do_old_sources() 10 0.09393 0.09708 0.09917 2.81% FabArray::ParallelCopy_finish() 41 0.03414 0.06071 0.09884 2.80% amrex::Copy() 193 0.06789 0.07919 0.08697 2.46% FabArray::setVal() 143 0.06305 0.07097 0.08417 2.38% Castro::initialize_advance() 10 0.06206 0.07298 0.08349 2.36% Castro::computeTemp() 63 0.06661 0.07033 0.07674 2.17% Castro::do_new_sources() 10 0.0609 0.06486 0.07201 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04718 0.05015 0.05426 1.54% Castro::reset_internal_energy(Fab) 1008 0.04689 0.04983 0.05394 1.53% Castro::normalize_species() 62 0.04098 0.04225 0.04443 1.26% FabArray::ParallelCopy_nowait() 41 0.03482 0.03987 0.04186 1.18% StateDataPhysBCFunct::() 41 0.03582 0.03771 0.03983 1.13% StateData::FillBoundary(geom) 41 0.03572 0.03761 0.03972 1.12% Castro::construct_new_source() 50 0.02693 0.03026 0.03226 0.91% Gravity::interpolate_monopole_grav() 21 0.02832 0.02883 0.02963 0.84% Castro::post_init() 1 0.02728 0.02766 0.02785 0.79% Castro::finalize_do_advance() 10 0.01282 0.02075 0.02588 0.73% Castro::construct_new_gravity_source() 10 0.0213 0.02386 0.02542 0.72% Amr::writePlotFile() 2 0.02499 0.02509 0.02525 0.71% Castro::post_timestep() 10 0.01538 0.01647 0.01858 0.53% VisMF::Write(FabArray) 2 0.01285 0.01355 0.01649 0.47% Castro::apply_source_to_state() 20 0.01055 0.01298 0.01437 0.41% FabArray::Saxpy() 20 0.01051 0.01293 0.01431 0.41% Castro::Castro() 1 0.009694 0.011 0.01385 0.39% FabArray::setDomainBndry() 41 0.008565 0.01117 0.01233 0.35% Castro::check_for_nan() 20 0.009513 0.01059 0.01179 0.33% MultiFab::contains_nan() 20 0.009493 0.01057 0.01177 0.33% Castro::construct_old_source() 50 0.007134 0.009766 0.01041 0.29% Castro::construct_old_gravity_source() 10 0.007053 0.009695 0.01034 0.29% Castro::initMFs() 1 0.006093 0.007231 0.00978 0.28% Castro::computeNewDt() 9 0.009484 0.009498 0.009504 0.27% Castro::enforce_min_density() 62 0.007093 0.007512 0.008126 0.23% AmrLevel::AmrLevel(dm) 1 0.005104 0.005956 0.007812 0.22% StateData::define() 4 0.005072 0.005924 0.007774 0.22% Castro::finalize_advance() 10 0.002902 0.00422 0.005461 0.15% Castro::swap_state_time_levels() 10 0.002453 0.004077 0.004405 0.12% Castro::buildMetrics() 1 0.001578 0.001864 0.002446 0.07% Castro::post_regrid() 1 0.001616 0.001711 0.002092 0.06% Amr::InitAmr() 1 0.0002573 0.0003556 0.000645 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.259e-05 0.0003367 0.0004399 0.01% DistributionMapping::LeastUsedCPUs() 1 7.259e-06 0.0003309 0.000433 0.01% Castro::enforce_consistent_e() 1 7.666e-05 9.814e-05 0.0001477 0.00% FabArrayBase::getCPC() 41 6.754e-05 7.921e-05 9.753e-05 0.00% Amr::writeSmallPlotFile() 1 3.222e-05 4.377e-05 6.467e-05 0.00% Castro::retry_advance_ctu() 10 6.529e-06 1.153e-05 4.195e-05 0.00% FabArrayBase::CPC::define() 2 2.209e-05 2.822e-05 3.548e-05 0.00% Castro::enforce_speed_limit() 62 2.559e-05 2.826e-05 3.011e-05 0.00% Gravity::set_mass_offset() 10 8.802e-06 1.223e-05 1.967e-05 0.00% Amr::initSubcycle() 1 8.949e-06 1.132e-05 1.723e-05 0.00% Gravity::swapTimeLevels() 10 1.053e-05 1.355e-05 1.67e-05 0.00% Castro::create_source_corrector() 10 7.241e-06 8.997e-06 1.062e-05 0.00% Castro::FluxRegCrseInit 10 5.634e-06 6.922e-06 7.772e-06 0.00% Castro::FluxRegFineAdd() 10 2.009e-06 2.439e-06 2.771e-06 0.00% DistributionMapping::Distribute() 1 9.42e-07 1.207e-06 1.45e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-49-g22908d8ad214) finalized