MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-51-gde7c6189623b) initialized Starting run at 05:21:03 UTC on 2023-08-31. Successfully read inputs file ... Castro git describe: 23.08-7-gf1b93be75 AMReX git describe: 23.08-51-gde7c61896 Microphysics git describe: 23.08-19-gbb8d2a2b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015649242 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35557002 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.398218932 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.369098183 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338469652 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362474934 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332844201 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311592916 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312164537 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315009395 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.3140914 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009865332 seconds Ending run at 05:21:06 UTC on 2023-08-31. Run time = 3.611066911 Run time without initialization = 3.42480699 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.609 ... 3.61 ... 3.611 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3178 2.3687 2.4184 66.97% Gravity::make_radial_gravity() 21 0.3189 0.3358 0.3464 9.59% check_for_negative_density() 10 0.07164 0.1286 0.1825 5.05% Castro::initData() 1 0.04027 0.07812 0.1214 3.36% Castro::estTimeStep() 21 0.02464 0.07476 0.1126 3.12% amrex::Copy() 193 0.0655 0.07895 0.0887 2.46% FabArray::setVal() 143 0.06487 0.07115 0.08072 2.24% FabArray::ParallelCopy_finish() 41 0.03673 0.05349 0.07473 2.07% Castro::reset_internal_energy(Fab) 1008 0.0472 0.04853 0.0524 1.45% StateData::FillBoundary(geom) 41 0.03535 0.03898 0.04637 1.28% Castro::normalize_species() 62 0.04018 0.04163 0.04379 1.21% FabArray::ParallelCopy_nowait() 41 0.03585 0.041 0.04309 1.19% FillPatchIterator::Initialize 41 0.02745 0.03293 0.03525 0.98% Gravity::interpolate_monopole_grav() 21 0.02821 0.0286 0.02927 0.81% Castro::construct_new_gravity_source() 10 0.02246 0.02412 0.02666 0.74% Castro::computeTemp() 63 0.0185 0.01958 0.02099 0.58% Castro::initialize_do_advance() 10 0.0115 0.0175 0.02032 0.56% VisMF::Write(FabArray) 2 0.0129 0.01331 0.01549 0.43% Castro::initialize_advance() 10 0.009922 0.01207 0.01506 0.42% FabArray::Saxpy() 20 0.01111 0.01299 0.01384 0.38% FabArray::setDomainBndry() 41 0.008941 0.01206 0.01335 0.37% MultiFab::contains_nan() 20 0.0101 0.01069 0.01157 0.32% Castro::construct_old_gravity_source() 10 0.007619 0.01002 0.01089 0.30% Amr::writePlotFile() 2 0.00728 0.008873 0.009612 0.27% Castro::initMFs() 1 0.005971 0.006467 0.007836 0.22% Castro::enforce_min_density() 62 0.00711 0.007425 0.007732 0.21% StateData::define() 4 0.004939 0.005725 0.00741 0.21% Castro::construct_new_source() 50 0.00568 0.006147 0.006329 0.18% Gravity::get_new_grav_vector() 11 0.002785 0.003991 0.005784 0.16% main() 1 0.002871 0.004031 0.004741 0.13% Castro::swap_state_time_levels() 10 0.003094 0.003965 0.004279 0.12% Castro::buildMetrics() 1 0.001429 0.001687 0.002713 0.08% Amr::coarseTimeStep() 10 0.001054 0.002005 0.002707 0.07% Gravity::get_old_grav_vector() 10 0.001558 0.002016 0.00231 0.06% Castro::finalize_do_advance() 10 0.0003886 0.0009143 0.001112 0.03% AmrLevel::FillPatch() 41 0.0006647 0.0007452 0.0007969 0.02% Amr::InitAmr() 1 0.0002642 0.0003442 0.0005032 0.01% Amr::timeStep() 10 0.000177 0.0002298 0.0004241 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002992 0.0003116 0.0003393 0.01% DistributionMapping::LeastUsedCPUs() 1 7.518e-06 0.00019 0.0002754 0.01% Castro::do_advance_ctu() 10 0.0001338 0.0001631 0.0001889 0.01% Castro::clean_state() 62 0.0001421 0.0001636 0.0001776 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001099 0.0001215 0.0001528 0.00% Castro::do_old_sources() 10 8.154e-05 0.0001003 0.0001203 0.00% Castro::finalize_advance() 10 8.097e-05 0.0001016 0.0001199 0.00% StateDataPhysBCFunct::() 41 8.993e-05 0.0001061 0.0001166 0.00% FabArray::ParallelCopy() 41 6.832e-05 7.921e-05 9.9e-05 0.00% Castro::enforce_consistent_e() 1 7.777e-05 8.293e-05 8.898e-05 0.00% Castro::construct_old_source() 50 6.911e-05 7.722e-05 8.662e-05 0.00% FillPatchSingleLevel 41 6.318e-05 7.015e-05 7.814e-05 0.00% Castro::do_new_sources() 10 6.136e-05 6.582e-05 7.402e-05 0.00% Castro::Castro() 1 4.707e-05 6.091e-05 7.331e-05 0.00% Amr::FinalizeInit() 1 4.115e-06 1.3e-05 6.864e-05 0.00% Castro::advance() 10 3.942e-05 4.806e-05 6.713e-05 0.00% Castro::subcycle_advance_ctu() 10 4.389e-05 5.368e-05 6.323e-05 0.00% Amr::writeSmallPlotFile() 1 3.204e-05 4.5e-05 6.123e-05 0.00% Castro::apply_source_to_state() 20 3.997e-05 5.058e-05 6.018e-05 0.00% FabArrayBase::getCPC() 41 4.253e-05 5.104e-05 6.008e-05 0.00% Castro::construct_old_gravity() 10 3.89e-05 4.614e-05 5.507e-05 0.00% Castro::construct_new_gravity() 10 3.376e-05 3.804e-05 4.922e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.188e-05 2.969e-05 3.826e-05 0.00% Castro::expand_state() 10 1.808e-05 2.466e-05 3.525e-05 0.00% Amr::defBaseLevel() 1 2.556e-05 2.827e-05 3.472e-05 0.00% Castro::enforce_speed_limit() 62 2.611e-05 2.837e-05 3.252e-05 0.00% FabArrayBase::CPC::define() 2 2.25e-05 2.573e-05 2.908e-05 0.00% Castro::check_for_nan() 20 1.978e-05 2.243e-05 2.571e-05 0.00% Amr::initSubcycle() 1 8.917e-06 1.236e-05 2.471e-05 0.00% Castro::post_timestep() 10 1.26e-05 1.492e-05 1.791e-05 0.00% Gravity::swapTimeLevels() 10 1.201e-05 1.37e-05 1.604e-05 0.00% Gravity::set_mass_offset() 10 7.783e-06 1.081e-05 1.441e-05 0.00% Castro::computeNewDt() 9 8.499e-06 1.024e-05 1.235e-05 0.00% Castro::create_source_corrector() 10 8.201e-06 9.543e-06 1.104e-05 0.00% Castro::FluxRegCrseInit 10 5.397e-06 7.312e-06 8.491e-06 0.00% Castro::retry_advance_ctu() 10 6.087e-06 6.964e-06 7.545e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.778e-06 4.533e-06 6.01e-06 0.00% Amr::InitializeInit() 1 1.821e-06 2.515e-06 5.191e-06 0.00% Castro::post_init() 1 2.807e-06 4.013e-06 5.035e-06 0.00% Castro::post_regrid() 1 1.679e-06 3.106e-06 4.645e-06 0.00% Castro::computeInitialDt() 2 3.631e-06 4.002e-06 4.509e-06 0.00% Amr::init() 1 1.916e-06 2.194e-06 2.538e-06 0.00% Castro::FluxRegFineAdd() 10 2.008e-06 2.213e-06 2.525e-06 0.00% Amr::initialInit() 1 1.39e-06 1.676e-06 2.007e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.273e-06 1.76e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.609 3.61 3.611 100.00% Amr::coarseTimeStep() 10 3.41 3.41 3.41 94.44% Amr::timeStep() 10 3.397 3.398 3.399 94.12% Castro::advance() 10 3.382 3.382 3.382 93.67% Castro::subcycle_advance_ctu() 10 3.297 3.304 3.308 91.60% Castro::do_advance_ctu() 10 3.297 3.304 3.308 91.60% Castro::construct_ctu_hydro_source() 10 2.512 2.518 2.523 69.86% Gravity::make_radial_gravity() 21 0.3352 0.3528 0.3606 9.99% Gravity::get_new_grav_vector() 11 0.2241 0.2272 0.2295 6.36% AmrLevel::FillPatch() 41 0.1941 0.2099 0.224 6.20% Castro::construct_old_gravity() 10 0.1995 0.212 0.2181 6.04% Gravity::get_old_grav_vector() 10 0.1989 0.2114 0.2175 6.02% Castro::construct_new_gravity() 10 0.1998 0.2019 0.2032 5.63% FillPatchIterator::Initialize 41 0.1655 0.1789 0.1909 5.29% Amr::init() 1 0.1856 0.1858 0.1858 5.15% check_for_negative_density() 10 0.07164 0.1286 0.1825 5.05% Castro::initialize_do_advance() 10 0.1631 0.1708 0.1775 4.92% Amr::initialInit() 1 0.1699 0.1706 0.1711 4.74% FillPatchIterator::FillFromLevel0() 41 0.1189 0.1339 0.1517 4.20% FillPatchSingleLevel 41 0.1188 0.1338 0.1516 4.20% Amr::InitializeInit() 1 0.05924 0.09804 0.1416 3.92% Amr::defBaseLevel() 1 0.05923 0.09803 0.1416 3.92% Castro::initData() 1 0.04432 0.0819 0.1249 3.46% Castro::clean_state() 62 0.1127 0.1167 0.1244 3.44% Castro::expand_state() 10 0.1059 0.1157 0.1237 3.42% Castro::estTimeStep() 21 0.02464 0.07476 0.1126 3.12% FabArray::ParallelCopy() 41 0.07996 0.09465 0.1108 3.07% Amr::FinalizeInit() 1 0.02868 0.07254 0.1107 3.07% Castro::do_old_sources() 10 0.09606 0.0998 0.1041 2.88% amrex::Copy() 193 0.0655 0.07895 0.0887 2.46% Castro::computeInitialDt() 2 0.00217 0.04564 0.08441 2.34% Castro::initialize_advance() 10 0.07061 0.07425 0.08141 2.25% FabArray::setVal() 143 0.06487 0.07115 0.08072 2.24% FabArray::ParallelCopy_finish() 41 0.03673 0.05349 0.07473 2.07% Castro::computeTemp() 63 0.066 0.06842 0.0737 2.04% Castro::do_new_sources() 10 0.05977 0.06467 0.07271 2.01% Castro::reset_internal_energy(MultiFab) 63 0.0475 0.04884 0.05271 1.46% Castro::reset_internal_energy(Fab) 1008 0.0472 0.04853 0.0524 1.45% StateDataPhysBCFunct::() 41 0.03547 0.03909 0.04648 1.29% StateData::FillBoundary(geom) 41 0.03535 0.03898 0.04637 1.28% Castro::normalize_species() 62 0.04018 0.04163 0.04379 1.21% FabArray::ParallelCopy_nowait() 41 0.03593 0.04108 0.04316 1.20% Castro::construct_new_source() 50 0.02854 0.03027 0.03297 0.91% Gravity::interpolate_monopole_grav() 21 0.02821 0.0286 0.02927 0.81% Castro::post_init() 1 0.02571 0.02642 0.02708 0.75% Castro::construct_new_gravity_source() 10 0.02246 0.02412 0.02666 0.74% Castro::finalize_do_advance() 10 0.01195 0.0209 0.02631 0.73% Amr::writePlotFile() 2 0.02438 0.02511 0.02573 0.71% Castro::post_timestep() 10 0.01537 0.01579 0.01628 0.45% VisMF::Write(FabArray) 2 0.0129 0.01331 0.01549 0.43% Castro::apply_source_to_state() 20 0.01116 0.01304 0.0139 0.38% FabArray::Saxpy() 20 0.01111 0.01299 0.01384 0.38% FabArray::setDomainBndry() 41 0.008941 0.01206 0.01335 0.37% Castro::Castro() 1 0.009681 0.01016 0.01191 0.33% Castro::check_for_nan() 20 0.01012 0.01071 0.01159 0.32% MultiFab::contains_nan() 20 0.0101 0.01069 0.01157 0.32% Castro::construct_old_source() 50 0.007692 0.0101 0.01097 0.30% Castro::construct_old_gravity_source() 10 0.007619 0.01002 0.01089 0.30% Castro::computeNewDt() 9 0.009148 0.009153 0.009158 0.25% Castro::initMFs() 1 0.005971 0.006467 0.007836 0.22% Castro::enforce_min_density() 62 0.00711 0.007425 0.007732 0.21% AmrLevel::AmrLevel(dm) 1 0.004963 0.005754 0.007442 0.21% StateData::define() 4 0.004939 0.005725 0.00741 0.21% Castro::swap_state_time_levels() 10 0.003094 0.003965 0.004279 0.12% Castro::finalize_advance() 10 0.003105 0.003447 0.003815 0.11% Castro::buildMetrics() 1 0.001546 0.00183 0.00296 0.08% Castro::post_regrid() 1 0.001529 0.001614 0.001685 0.05% Amr::InitAmr() 1 0.000274 0.0003566 0.00052 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.362e-05 0.0001958 0.0002829 0.01% DistributionMapping::LeastUsedCPUs() 1 7.518e-06 0.00019 0.0002754 0.01% Castro::enforce_consistent_e() 1 7.777e-05 8.293e-05 8.898e-05 0.00% FabArrayBase::getCPC() 41 6.515e-05 7.676e-05 8.612e-05 0.00% Amr::writeSmallPlotFile() 1 3.204e-05 4.5e-05 6.123e-05 0.00% Castro::enforce_speed_limit() 62 2.611e-05 2.837e-05 3.252e-05 0.00% FabArrayBase::CPC::define() 2 2.25e-05 2.573e-05 2.908e-05 0.00% Amr::initSubcycle() 1 8.917e-06 1.236e-05 2.471e-05 0.00% Gravity::swapTimeLevels() 10 1.201e-05 1.37e-05 1.604e-05 0.00% Gravity::set_mass_offset() 10 7.783e-06 1.081e-05 1.441e-05 0.00% Castro::create_source_corrector() 10 8.201e-06 9.543e-06 1.104e-05 0.00% Castro::FluxRegCrseInit 10 5.397e-06 7.312e-06 8.491e-06 0.00% Castro::retry_advance_ctu() 10 6.087e-06 6.964e-06 7.545e-06 0.00% Castro::FluxRegFineAdd() 10 2.008e-06 2.213e-06 2.525e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.273e-06 1.76e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 40 B 90 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-51-gde7c6189623b) finalized