MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-51-gde7c6189623b) initialized Starting run at 05:20:52 UTC on 2023-09-01. Successfully read inputs file ... Castro git describe: 23.08-7-gf1b93be75 AMReX git describe: 23.08-51-gde7c61896 Microphysics git describe: 23.08-19-gbb8d2a2b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015257727 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357556586 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355446892 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330645486 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332493188 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351246702 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342044342 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313759237 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312417354 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31363985 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314800654 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009543483 seconds Ending run at 05:20:56 UTC on 2023-09-01. Run time = 3.563899895 Run time without initialization = 3.338785152 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.563 ... 3.563 ... 3.564 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2529 2.3372 2.4069 67.53% Gravity::make_radial_gravity() 21 0.3157 0.3231 0.3351 9.40% check_for_negative_density() 10 0.01561 0.08861 0.1757 4.93% Castro::estTimeStep() 21 0.02302 0.1038 0.163 4.57% Castro::initData() 1 0.03832 0.08852 0.1541 4.32% FabArray::ParallelCopy_finish() 41 0.03309 0.05623 0.08616 2.42% amrex::Copy() 193 0.06484 0.07682 0.08525 2.39% FabArray::setVal() 143 0.06328 0.07116 0.08326 2.34% Castro::reset_internal_energy(Fab) 1008 0.04649 0.04912 0.0505 1.42% Castro::normalize_species() 62 0.04048 0.04222 0.04481 1.26% FabArray::ParallelCopy_nowait() 41 0.03502 0.03998 0.04186 1.17% StateData::FillBoundary(geom) 41 0.03481 0.03755 0.03937 1.10% FillPatchIterator::Initialize 41 0.02773 0.03148 0.03546 1.00% Gravity::interpolate_monopole_grav() 21 0.02835 0.0291 0.03146 0.88% Castro::construct_new_gravity_source() 10 0.02229 0.02537 0.03001 0.84% Castro::initialize_do_advance() 10 0.0122 0.01685 0.02046 0.57% Castro::computeTemp() 63 0.01942 0.01975 0.02035 0.57% VisMF::Write(FabArray) 2 0.01233 0.01316 0.01656 0.46% FabArray::Saxpy() 20 0.01069 0.01315 0.01425 0.40% Castro::initialize_advance() 10 0.004078 0.01009 0.01354 0.38% FabArray::setDomainBndry() 41 0.008726 0.01124 0.01271 0.36% MultiFab::contains_nan() 20 0.009563 0.01053 0.01179 0.33% Castro::construct_old_gravity_source() 10 0.007046 0.009735 0.01045 0.29% Amr::writePlotFile() 2 0.006459 0.009274 0.009969 0.28% Castro::initMFs() 1 0.006117 0.00719 0.009433 0.26% Castro::enforce_min_density() 62 0.007034 0.007378 0.007646 0.21% StateData::define() 4 0.005001 0.005973 0.007587 0.21% Castro::construct_new_source() 50 0.005742 0.006315 0.006731 0.19% main() 1 0.003254 0.003926 0.004453 0.12% Castro::swap_state_time_levels() 10 0.002407 0.004017 0.00431 0.12% Gravity::get_new_grav_vector() 11 0.003027 0.003569 0.004077 0.11% Amr::coarseTimeStep() 10 0.001503 0.002597 0.003788 0.11% Gravity::get_old_grav_vector() 10 0.001555 0.001979 0.002406 0.07% Castro::buildMetrics() 1 0.001434 0.001725 0.002174 0.06% Castro::finalize_do_advance() 10 0.0005234 0.0009833 0.001138 0.03% AmrLevel::FillPatch() 41 0.000664 0.0008838 0.0009972 0.03% Amr::InitAmr() 1 0.0002636 0.0003492 0.0004926 0.01% Amr::timeStep() 10 0.0001697 0.0002381 0.0004103 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002918 0.0003127 0.0003825 0.01% DistributionMapping::LeastUsedCPUs() 1 6.492e-06 0.0001752 0.000267 0.01% Castro::do_advance_ctu() 10 0.0001542 0.0001834 0.0002196 0.01% Castro::clean_state() 62 0.000143 0.0001613 0.0001937 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001069 0.0001195 0.0001408 0.00% Castro::enforce_consistent_e() 1 8.07e-05 9.512e-05 0.0001374 0.00% StateDataPhysBCFunct::() 41 9.209e-05 0.0001016 0.0001136 0.00% Castro::finalize_advance() 10 8.154e-05 0.0001016 0.0001124 0.00% Castro::do_old_sources() 10 8.145e-05 9.723e-05 0.0001074 0.00% Castro::construct_old_source() 50 6.707e-05 7.273e-05 8.681e-05 0.00% FabArray::ParallelCopy() 41 6.936e-05 7.614e-05 8.369e-05 0.00% Amr::FinalizeInit() 1 4.507e-06 1.469e-05 8.221e-05 0.00% Castro::Castro() 1 5.502e-05 6.448e-05 8.157e-05 0.00% FillPatchSingleLevel 41 6.118e-05 6.704e-05 7.512e-05 0.00% FabArrayBase::getCPC() 41 4.298e-05 5.237e-05 7.507e-05 0.00% Castro::do_new_sources() 10 5.382e-05 6.548e-05 7.297e-05 0.00% Castro::advance() 10 4.193e-05 5.136e-05 6.885e-05 0.00% Castro::subcycle_advance_ctu() 10 4.607e-05 5.383e-05 6.643e-05 0.00% Amr::writeSmallPlotFile() 1 3.164e-05 4.986e-05 6.453e-05 0.00% Castro::construct_old_gravity() 10 4.12e-05 4.773e-05 6.045e-05 0.00% Castro::apply_source_to_state() 20 4.479e-05 5.05e-05 5.991e-05 0.00% Castro::construct_new_gravity() 10 3.503e-05 4.11e-05 5.1e-05 0.00% Amr::defBaseLevel() 1 2.436e-05 3.108e-05 4.579e-05 0.00% Castro::enforce_speed_limit() 62 2.648e-05 2.927e-05 4.22e-05 0.00% FabArrayBase::CPC::define() 2 2.203e-05 2.783e-05 4.096e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.031e-05 2.534e-05 3.071e-05 0.00% Castro::expand_state() 10 2.158e-05 2.477e-05 2.959e-05 0.00% Castro::check_for_nan() 20 1.91e-05 2.092e-05 2.259e-05 0.00% Gravity::swapTimeLevels() 10 1.154e-05 1.43e-05 2.039e-05 0.00% Amr::initSubcycle() 1 9.065e-06 1.154e-05 1.735e-05 0.00% Castro::post_timestep() 10 1.278e-05 1.515e-05 1.71e-05 0.00% Gravity::set_mass_offset() 10 9.516e-06 1.196e-05 1.507e-05 0.00% Castro::computeNewDt() 9 9.073e-06 1.066e-05 1.226e-05 0.00% Castro::create_source_corrector() 10 8.705e-06 9.405e-06 1.066e-05 0.00% Castro::retry_advance_ctu() 10 6.303e-06 7.536e-06 9.402e-06 0.00% Castro::FluxRegCrseInit 10 6.566e-06 7.886e-06 8.866e-06 0.00% Castro::post_regrid() 1 1.54e-06 3.586e-06 7.552e-06 0.00% Castro::computeInitialDt() 2 4.12e-06 4.684e-06 6.206e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.881e-06 4.646e-06 5.249e-06 0.00% Amr::InitializeInit() 1 1.911e-06 2.596e-06 5.049e-06 0.00% Castro::post_init() 1 3.13e-06 3.733e-06 4.75e-06 0.00% Amr::init() 1 1.904e-06 2.37e-06 2.974e-06 0.00% Castro::FluxRegFineAdd() 10 2.055e-06 2.248e-06 2.478e-06 0.00% DistributionMapping::Distribute() 1 1.056e-06 1.356e-06 1.801e-06 0.00% Amr::initialInit() 1 1.284e-06 1.5e-06 1.699e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.563 3.563 3.564 100.00% Amr::coarseTimeStep() 10 3.325 3.325 3.325 93.29% Amr::timeStep() 10 3.311 3.312 3.313 92.96% Castro::advance() 10 3.295 3.296 3.296 92.50% Castro::subcycle_advance_ctu() 10 3.209 3.219 3.228 90.58% Castro::do_advance_ctu() 10 3.209 3.218 3.228 90.58% Castro::construct_ctu_hydro_source() 10 2.443 2.447 2.45 68.74% Gravity::make_radial_gravity() 21 0.3321 0.3398 0.3494 9.80% Gravity::get_new_grav_vector() 11 0.2273 0.2287 0.2306 6.47% Amr::init() 1 0.2245 0.2246 0.2247 6.31% AmrLevel::FillPatch() 41 0.1839 0.2068 0.2228 6.25% Amr::initialInit() 1 0.209 0.2092 0.2094 5.88% Castro::construct_old_gravity() 10 0.1924 0.1979 0.2062 5.79% Gravity::get_old_grav_vector() 10 0.1918 0.1971 0.2056 5.77% Castro::construct_new_gravity() 10 0.2014 0.2023 0.2037 5.72% FillPatchIterator::Initialize 41 0.1572 0.1769 0.1935 5.43% Castro::initialize_do_advance() 10 0.1577 0.1715 0.1814 5.09% Amr::InitializeInit() 1 0.05706 0.1096 0.1789 5.02% Amr::defBaseLevel() 1 0.05706 0.1096 0.1789 5.02% check_for_negative_density() 10 0.01561 0.08861 0.1757 4.93% Castro::estTimeStep() 21 0.02302 0.1038 0.163 4.57% Castro::initData() 1 0.04225 0.09257 0.1578 4.43% FillPatchIterator::FillFromLevel0() 41 0.1144 0.1342 0.157 4.41% FillPatchSingleLevel 41 0.1143 0.1341 0.1569 4.40% Amr::FinalizeInit() 1 0.03026 0.09966 0.1522 4.27% Castro::expand_state() 10 0.1005 0.1178 0.129 3.62% Castro::computeInitialDt() 2 0.002289 0.07182 0.1244 3.49% FabArray::ParallelCopy() 41 0.07478 0.09636 0.1214 3.41% Castro::clean_state() 62 0.1141 0.1179 0.1212 3.40% Castro::do_old_sources() 10 0.08962 0.09333 0.09847 2.76% FabArray::ParallelCopy_finish() 41 0.03309 0.05623 0.08616 2.42% amrex::Copy() 193 0.06484 0.07682 0.08525 2.39% FabArray::setVal() 143 0.06328 0.07116 0.08326 2.34% Castro::initialize_advance() 10 0.06301 0.07323 0.08271 2.32% Castro::do_new_sources() 10 0.05964 0.06737 0.07896 2.22% Castro::computeTemp() 63 0.06638 0.06918 0.07107 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04678 0.04943 0.05081 1.43% Castro::reset_internal_energy(Fab) 1008 0.04649 0.04912 0.0505 1.42% Castro::normalize_species() 62 0.04048 0.04222 0.04481 1.26% FabArray::ParallelCopy_nowait() 41 0.03512 0.04006 0.04193 1.18% StateDataPhysBCFunct::() 41 0.0349 0.03765 0.03947 1.11% StateData::FillBoundary(geom) 41 0.03481 0.03755 0.03937 1.10% Castro::construct_new_source() 50 0.02863 0.03168 0.03663 1.03% Castro::finalize_do_advance() 10 0.01204 0.02386 0.03245 0.91% Gravity::interpolate_monopole_grav() 21 0.02835 0.0291 0.03146 0.88% Castro::construct_new_gravity_source() 10 0.02229 0.02537 0.03001 0.84% Castro::post_init() 1 0.027 0.02738 0.02763 0.78% Amr::writePlotFile() 2 0.02469 0.02502 0.0253 0.71% Castro::post_timestep() 10 0.01541 0.01598 0.01676 0.47% VisMF::Write(FabArray) 2 0.01233 0.01316 0.01656 0.46% Castro::apply_source_to_state() 20 0.01073 0.0132 0.0143 0.40% FabArray::Saxpy() 20 0.01069 0.01315 0.01425 0.40% Castro::Castro() 1 0.009482 0.01078 0.01341 0.38% FabArray::setDomainBndry() 41 0.008726 0.01124 0.01271 0.36% Castro::check_for_nan() 20 0.009586 0.01055 0.01181 0.33% MultiFab::contains_nan() 20 0.009563 0.01053 0.01179 0.33% Castro::construct_old_source() 50 0.007115 0.009808 0.01052 0.30% Castro::construct_old_gravity_source() 10 0.007046 0.009735 0.01045 0.29% Castro::initMFs() 1 0.006117 0.00719 0.009433 0.26% Castro::computeNewDt() 9 0.009127 0.009141 0.00915 0.26% Castro::enforce_min_density() 62 0.007034 0.007378 0.007646 0.21% AmrLevel::AmrLevel(dm) 1 0.005027 0.005998 0.007617 0.21% StateData::define() 4 0.005001 0.005973 0.007587 0.21% Castro::finalize_advance() 10 0.003036 0.00379 0.004541 0.13% Castro::swap_state_time_levels() 10 0.002407 0.004017 0.00431 0.12% Castro::buildMetrics() 1 0.00155 0.001868 0.002386 0.07% Castro::post_regrid() 1 0.001593 0.001712 0.00199 0.06% Amr::InitAmr() 1 0.0002728 0.0003608 0.00051 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.168e-05 0.0001812 0.000274 0.01% DistributionMapping::LeastUsedCPUs() 1 6.492e-06 0.0001752 0.000267 0.01% Castro::enforce_consistent_e() 1 8.07e-05 9.512e-05 0.0001374 0.00% FabArrayBase::getCPC() 41 6.75e-05 8.02e-05 0.0001053 0.00% Amr::writeSmallPlotFile() 1 3.164e-05 4.986e-05 6.453e-05 0.00% Castro::enforce_speed_limit() 62 2.648e-05 2.927e-05 4.22e-05 0.00% FabArrayBase::CPC::define() 2 2.203e-05 2.783e-05 4.096e-05 0.00% Gravity::swapTimeLevels() 10 1.154e-05 1.43e-05 2.039e-05 0.00% Amr::initSubcycle() 1 9.065e-06 1.154e-05 1.735e-05 0.00% Gravity::set_mass_offset() 10 9.516e-06 1.196e-05 1.507e-05 0.00% Castro::create_source_corrector() 10 8.705e-06 9.405e-06 1.066e-05 0.00% Castro::retry_advance_ctu() 10 6.303e-06 7.536e-06 9.402e-06 0.00% Castro::FluxRegCrseInit 10 6.566e-06 7.886e-06 8.866e-06 0.00% Castro::FluxRegFineAdd() 10 2.055e-06 2.248e-06 2.478e-06 0.00% DistributionMapping::Distribute() 1 1.056e-06 1.356e-06 1.801e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-51-gde7c6189623b) finalized