MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.08-56-g9a85e502923e) initialized Starting run at 05:35:26 UTC on 2023-09-04. Successfully read inputs file ... Castro git describe: 23.08-7-gf1b93be75 AMReX git describe: 23.08-56-g9a85e5029 Microphysics git describe: 23.08-19-gbb8d2a2b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014552076 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371248279 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355874527 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328645491 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329863739 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351814902 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351448423 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.320427344 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318819365 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.32061668 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316424199 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009519785 seconds Ending run at 05:35:29 UTC on 2023-09-04. Run time = 3.584895989 Run time without initialization = 3.380631673 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.584 ... 3.585 ... 3.585 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2715 2.3406 2.4110 67.25% Gravity::make_radial_gravity() 21 0.3242 0.3316 0.3453 9.63% check_for_negative_density() 10 0.04222 0.1151 0.1854 5.17% Castro::estTimeStep() 21 0.04547 0.09584 0.1471 4.10% Castro::initData() 1 0.03831 0.08094 0.1366 3.81% FabArray::ParallelCopy_finish() 41 0.0344 0.05794 0.08936 2.49% amrex::Copy() 193 0.06277 0.07479 0.08467 2.36% FabArray::setVal() 143 0.06204 0.07087 0.08401 2.34% Castro::reset_internal_energy(Fab) 1008 0.04761 0.0489 0.05072 1.41% FabArray::ParallelCopy_nowait() 41 0.03456 0.0406 0.04632 1.29% Castro::normalize_species() 62 0.04136 0.04233 0.04355 1.21% StateData::FillBoundary(geom) 41 0.034 0.03778 0.04271 1.19% FillPatchIterator::Initialize 41 0.02646 0.03145 0.03574 1.00% Castro::construct_new_gravity_source() 10 0.02214 0.02525 0.03007 0.84% Gravity::interpolate_monopole_grav() 21 0.02854 0.02879 0.02919 0.81% Castro::initialize_do_advance() 10 0.0114 0.01722 0.0211 0.59% Castro::computeTemp() 63 0.01813 0.01954 0.0204 0.57% VisMF::Write(FabArray) 2 0.01146 0.01261 0.01543 0.43% FabArray::Saxpy() 20 0.01103 0.01298 0.01426 0.40% Castro::initialize_advance() 10 0.004067 0.0102 0.01382 0.39% MultiFab::contains_nan() 20 0.00968 0.01079 0.01301 0.36% FabArray::setDomainBndry() 41 0.008622 0.01096 0.01235 0.34% Amr::writePlotFile() 2 0.006179 0.009162 0.01145 0.32% Castro::construct_old_gravity_source() 10 0.007065 0.009493 0.01004 0.28% Castro::initMFs() 1 0.006231 0.006688 0.007882 0.22% Castro::enforce_min_density() 62 0.007113 0.007422 0.007746 0.22% Castro::construct_new_source() 50 0.005667 0.006176 0.006571 0.18% StateData::define() 4 0.005115 0.005447 0.00607 0.17% main() 1 0.004065 0.004699 0.005146 0.14% Castro::swap_state_time_levels() 10 0.003028 0.004062 0.004936 0.14% Gravity::get_new_grav_vector() 11 0.002766 0.003447 0.003982 0.11% Amr::coarseTimeStep() 10 0.001414 0.002284 0.002821 0.08% Gravity::get_old_grav_vector() 10 0.00156 0.001913 0.002302 0.06% Castro::buildMetrics() 1 0.001459 0.001535 0.001706 0.05% Castro::finalize_do_advance() 10 0.0005071 0.00124 0.001517 0.04% AmrLevel::FillPatch() 41 0.0007228 0.0008577 0.0009587 0.03% Amr::InitAmr() 1 0.0002835 0.0003726 0.0005687 0.02% Amr::timeStep() 10 0.0001795 0.00025 0.0004997 0.01% DistributionMapping::LeastUsedCPUs() 1 7.636e-06 0.000249 0.0003593 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002889 0.0003043 0.0003135 0.01% Castro::do_advance_ctu() 10 0.0001387 0.0001675 0.0002131 0.01% StateDataPhysBCFunct::() 41 8.466e-05 0.0001288 0.000173 0.00% Castro::clean_state() 62 0.0001425 0.000153 0.0001634 0.00% Castro::Castro() 1 5.904e-05 7.61e-05 0.0001436 0.00% FillPatchIterator::FillFromLevel0() 41 9.73e-05 0.0001125 0.000125 0.00% Castro::finalize_advance() 10 9.302e-05 0.000101 0.000107 0.00% Castro::enforce_consistent_e() 1 7.612e-05 9.084e-05 0.000104 0.00% Castro::do_old_sources() 10 7.795e-05 8.846e-05 9.536e-05 0.00% Amr::FinalizeInit() 1 4.497e-06 1.644e-05 9.533e-05 0.00% FabArray::ParallelCopy() 41 7.067e-05 7.998e-05 9.502e-05 0.00% Castro::construct_old_source() 50 5.084e-05 6.829e-05 7.951e-05 0.00% Castro::do_new_sources() 10 5.304e-05 6.456e-05 7.422e-05 0.00% FillPatchSingleLevel 41 6.167e-05 6.61e-05 7.226e-05 0.00% Amr::writeSmallPlotFile() 1 3.124e-05 5.28e-05 6.569e-05 0.00% FabArrayBase::getCPC() 41 4.662e-05 5.145e-05 6.433e-05 0.00% Castro::subcycle_advance_ctu() 10 4.042e-05 5.072e-05 6.065e-05 0.00% Castro::apply_source_to_state() 20 3.973e-05 4.699e-05 5.372e-05 0.00% Castro::construct_new_gravity() 10 3.341e-05 3.999e-05 5.344e-05 0.00% Castro::construct_old_gravity() 10 3.779e-05 4.471e-05 5.32e-05 0.00% Castro::advance() 10 3.913e-05 4.315e-05 4.66e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.997e-05 2.526e-05 3.806e-05 0.00% Castro::enforce_speed_limit() 62 2.637e-05 2.966e-05 3.381e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.557e-05 3.192e-05 0.00% Amr::defBaseLevel() 1 2.283e-05 2.76e-05 3.157e-05 0.00% Castro::expand_state() 10 2.143e-05 2.373e-05 2.471e-05 0.00% Castro::check_for_nan() 20 1.925e-05 2.153e-05 2.401e-05 0.00% Gravity::swapTimeLevels() 10 9.315e-06 1.49e-05 2.34e-05 0.00% Amr::initSubcycle() 1 9.009e-06 1.207e-05 2.005e-05 0.00% Castro::post_timestep() 10 1.35e-05 1.484e-05 1.636e-05 0.00% Gravity::set_mass_offset() 10 9.378e-06 1.083e-05 1.267e-05 0.00% Castro::computeNewDt() 9 8.305e-06 1.035e-05 1.178e-05 0.00% Castro::create_source_corrector() 10 7.48e-06 9.32e-06 1.166e-05 0.00% Castro::FluxRegCrseInit 10 6.44e-06 7.478e-06 9.106e-06 0.00% Amr::initialInit() 1 1.494e-06 2.754e-06 8.674e-06 0.00% Castro::retry_advance_ctu() 10 6.028e-06 7.127e-06 8.507e-06 0.00% Castro::post_regrid() 1 2.028e-06 3.764e-06 7.35e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.745e-06 5.174e-06 6.672e-06 0.00% Castro::computeInitialDt() 2 4.287e-06 4.729e-06 5.427e-06 0.00% Amr::InitializeInit() 1 1.778e-06 2.464e-06 4.367e-06 0.00% Castro::post_init() 1 2.837e-06 3.397e-06 4.25e-06 0.00% Amr::init() 1 1.873e-06 2.391e-06 2.753e-06 0.00% Castro::FluxRegFineAdd() 10 2.003e-06 2.278e-06 2.603e-06 0.00% DistributionMapping::Distribute() 1 9.35e-07 1.213e-06 1.679e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.584 3.584 3.585 100.00% Amr::coarseTimeStep() 10 3.366 3.366 3.366 93.89% Amr::timeStep() 10 3.353 3.353 3.354 93.56% Castro::advance() 10 3.336 3.337 3.338 93.11% Castro::subcycle_advance_ctu() 10 3.251 3.26 3.27 91.21% Castro::do_advance_ctu() 10 3.25 3.26 3.27 91.21% Castro::construct_ctu_hydro_source() 10 2.471 2.477 2.482 69.23% Gravity::make_radial_gravity() 21 0.3399 0.3473 0.3584 10.00% Gravity::get_new_grav_vector() 11 0.2283 0.2316 0.2352 6.56% AmrLevel::FillPatch() 41 0.1798 0.2086 0.2238 6.24% Castro::construct_old_gravity() 10 0.1947 0.2015 0.2108 5.88% Gravity::get_old_grav_vector() 10 0.1942 0.2007 0.2102 5.86% Castro::construct_new_gravity() 10 0.2023 0.205 0.2089 5.83% Amr::init() 1 0.2035 0.2037 0.2039 5.69% FillPatchIterator::Initialize 41 0.1527 0.1792 0.1935 5.40% Amr::initialInit() 1 0.1886 0.189 0.1893 5.28% check_for_negative_density() 10 0.04222 0.1151 0.1854 5.17% Castro::initialize_do_advance() 10 0.1597 0.1743 0.1847 5.15% FillPatchIterator::FillFromLevel0() 41 0.1145 0.1368 0.1584 4.42% Amr::InitializeInit() 1 0.05859 0.1013 0.1584 4.42% Amr::defBaseLevel() 1 0.05859 0.1013 0.1584 4.42% FillPatchSingleLevel 41 0.1144 0.1367 0.1583 4.42% Castro::estTimeStep() 21 0.04547 0.09584 0.1471 4.10% Castro::initData() 1 0.042 0.08499 0.1408 3.93% Castro::expand_state() 10 0.1023 0.1198 0.1312 3.66% Amr::FinalizeInit() 1 0.03073 0.08766 0.13 3.63% FabArray::ParallelCopy() 41 0.07759 0.0987 0.1241 3.46% Castro::clean_state() 62 0.1155 0.1177 0.1206 3.37% Castro::computeInitialDt() 2 0.002513 0.05978 0.1023 2.85% Castro::do_old_sources() 10 0.08763 0.09235 0.09543 2.66% FabArray::ParallelCopy_finish() 41 0.0344 0.05794 0.08936 2.49% amrex::Copy() 193 0.06277 0.07479 0.08467 2.36% FabArray::setVal() 143 0.06204 0.07087 0.08401 2.34% Castro::initialize_advance() 10 0.0624 0.07269 0.08254 2.30% Castro::do_new_sources() 10 0.05814 0.06668 0.07927 2.21% Castro::computeTemp() 63 0.06681 0.06874 0.07072 1.97% Castro::reset_internal_energy(MultiFab) 63 0.0479 0.0492 0.05103 1.42% Castro::reset_internal_energy(Fab) 1008 0.04761 0.0489 0.05072 1.41% FabArray::ParallelCopy_nowait() 41 0.03465 0.04068 0.0464 1.29% Castro::normalize_species() 62 0.04136 0.04233 0.04355 1.21% StateDataPhysBCFunct::() 41 0.03416 0.0379 0.04284 1.19% StateData::FillBoundary(geom) 41 0.034 0.03778 0.04271 1.19% Castro::finalize_do_advance() 10 0.01181 0.02804 0.03936 1.10% Castro::construct_new_source() 50 0.02828 0.03143 0.03664 1.02% Castro::construct_new_gravity_source() 10 0.02214 0.02525 0.03007 0.84% Gravity::interpolate_monopole_grav() 21 0.02854 0.02879 0.02919 0.81% Castro::post_init() 1 0.02727 0.02747 0.02777 0.77% Amr::writePlotFile() 2 0.02401 0.02434 0.02463 0.69% Castro::post_timestep() 10 0.0154 0.01609 0.01644 0.46% VisMF::Write(FabArray) 2 0.01146 0.01261 0.01543 0.43% Castro::apply_source_to_state() 20 0.01108 0.01302 0.01431 0.40% FabArray::Saxpy() 20 0.01103 0.01298 0.01426 0.40% Castro::check_for_nan() 20 0.009701 0.01081 0.01303 0.36% MultiFab::contains_nan() 20 0.00968 0.01079 0.01301 0.36% FabArray::setDomainBndry() 41 0.008622 0.01096 0.01235 0.34% Castro::Castro() 1 0.01021 0.0106 0.01151 0.32% Castro::construct_old_source() 50 0.007116 0.009561 0.01011 0.28% Castro::construct_old_gravity_source() 10 0.007065 0.009493 0.01004 0.28% Castro::computeNewDt() 9 0.009273 0.009279 0.009289 0.26% Castro::initMFs() 1 0.006231 0.006688 0.007882 0.22% Castro::enforce_min_density() 62 0.007113 0.007422 0.007746 0.22% AmrLevel::AmrLevel(dm) 1 0.005141 0.005473 0.0061 0.17% StateData::define() 4 0.005115 0.005447 0.00607 0.17% Castro::swap_state_time_levels() 10 0.003028 0.004062 0.004936 0.14% Castro::finalize_advance() 10 0.003023 0.003732 0.004511 0.13% Castro::post_regrid() 1 0.001593 0.001677 0.001923 0.05% Castro::buildMetrics() 1 0.001588 0.001664 0.00186 0.05% Amr::InitAmr() 1 0.000293 0.0003846 0.0005888 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.401e-05 0.0002554 0.0003673 0.01% DistributionMapping::LeastUsedCPUs() 1 7.636e-06 0.000249 0.0003593 0.01% Castro::enforce_consistent_e() 1 7.612e-05 9.084e-05 0.000104 0.00% FabArrayBase::getCPC() 41 6.928e-05 7.702e-05 9.215e-05 0.00% Amr::writeSmallPlotFile() 1 3.124e-05 5.28e-05 6.569e-05 0.00% Castro::enforce_speed_limit() 62 2.637e-05 2.966e-05 3.381e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.557e-05 3.192e-05 0.00% Gravity::swapTimeLevels() 10 9.315e-06 1.49e-05 2.34e-05 0.00% Amr::initSubcycle() 1 9.009e-06 1.207e-05 2.005e-05 0.00% Gravity::set_mass_offset() 10 9.378e-06 1.083e-05 1.267e-05 0.00% Castro::create_source_corrector() 10 7.48e-06 9.32e-06 1.166e-05 0.00% Castro::FluxRegCrseInit 10 6.44e-06 7.478e-06 9.106e-06 0.00% Castro::retry_advance_ctu() 10 6.028e-06 7.127e-06 8.507e-06 0.00% Castro::FluxRegFineAdd() 10 2.003e-06 2.278e-06 2.603e-06 0.00% DistributionMapping::Distribute() 1 9.35e-07 1.213e-06 1.679e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 37 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.08-56-g9a85e502923e) finalized